Vibrational spectra of stannane: Harmonic force field, Raman and IR intensities from ab initio correlated wavefunctions

The vibrational spectra and the harmonic force field for the stannane molecule has been calculated from ab initio SCF calculations using an effective core potential and two double-zeta basis sets for the valence electrons. Polarized functions and electron correlation effects on the calculated force constants and frequencies are analyzed carefully. At HF SCF level the calculated frequencies are higher than the experimental ones by about 8.15% while at second-order Møller-Plesset perturbation level, the mean absolute percentage deviation of the frequencies is found to be 3.75%. This mean absolute percentage deviation is notably improved at SDCI (3.2%) and SDQCI (2.2%) levels of theory. The integrated molar absorption coefficients and the scattering activities are calculated and their values agree reasonably with experiment.     

One-pot synthesis of Nb-modified Al<Subscript>2</Subscript>O<Subscript>3</Subscript> support for NiMo hydrodesulfurization catalysts

The effect of Nb as a support modifier on the NiMo₆/Al₂O₃–Nb₂O₅(x) (x?=?0, 1, 4, and 8?wt% Nb) catalysts was studied. The supports were prepared by one-pot coprecipitation from soluble precursors. The XRF analysis of the catalysts showed that the contents of Mo and Ni increased slightly with the presence of Nb. Micropore area and pore volume augmented importantly with Nb content, resulting in pore diameters between 5.3 and 9.3?nm. XPS analysis showed that the presence of Nb decreases the active metal–support interaction, improving the Mo and Ni sulfidation degree. The Raman spectra of sulfided catalysts suggested an increase in the number of layers of MoS₂ in the presence of Nb. Generally, the thiophene HDS activity at normal pressure of sulfided NiMo₆/Al₂O₃–Nb₂O₅(8) was greater than that of the sulfided catalysts with x?=?0, 1, and 4?wt% Nb, which can be attributed to the Nb promotion that would have an effect on the type of active site (Brønsted or Lewis acidic sites), since the number of sites by CO chemisorption for sulfided NiMo₆/Al₂O₃–Nb₂O₅(x) did not show correlation with the catalytic activity. The high-pressure HDS activity of dibenzothiophene was also greater in the presence of Nb, and the hydrogenation route was preferred for the Nb-promoted solid, while the unpromoted one showed a larger yield of direct desulfurization products.

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PROSIT: pseudo-rotational online service and interactive tool, applied to a conformational survey of nucleosides and nucleotides

A Pseudo-Rotational Online Service and Interactive Tool (PROSIT) designed to perform complete pseudorotational analysis of nucleosides and nucleotides is described. This service is freely available at http://cactus.nci.nih.gov/prosit/. Files containing nucleosides/nucleotides or DNA/RNA segments, isolated or bound to other molecules (e.g., a protein) can be uploaded to be processed by PROSIT. The service outputs the pseudorotational phase angle P, puckering amplitude numax, and other related information for each nucleoside/nucleotide detected. The service was implemented using the chemoinformatics toolkit CACTVS. PROSIT was used for a survey of nucleosides contained in the Cambridge Structural Database and nucleotides in high-resolution crystal structures from the Nucleic Acid Database. Special cases discussed include nucleosides having constrained sugar moieties with extreme puckering amplitudes, and several specific DNA/RNA helices and protein-bound DNA oligonucleotides (Dickerson-Drew dodecamer, RNA/DNA hybrid viral polypurine tract, Z-DNA enantiomers, B-DNA containing (L)-alpha-threofuranosyl nucleotides, TATA-box binding protein/TATA-box complex, and DNA (cytosine C5)-methyltransferase complexed with an oligodeoxyribonucleotide containing transition state analogue 5,6-dihydro-5-azacytosine). When the puckering amplitude decreases to a small value, the sugar becomes increasingly planar, thus reducing the significance of the phase angle P. We introduce the term "central conformation" to describe this part of the pseudorotational hyperspace in contrast to the conventional north and south conformations.     

Diastereoselective allylation of aldehydes with an enantiopure 2-sulfinylallyl halide under environmentally friendly Barbier-type conditions

[reaction: see text] A simple, efficient, and diastereoselective zinc-promoted allylation of aldehydes with enantiopure (Ss)-3-chloro-2-(p-tolylsulfinyl)-1-propene [(Ss)-1] under aqueous Barbier conditions is described. The observed diastereoselectivity can be explained via an acyclic antiperiplanar transition state model.     

Correlated Rayleigh Scattering Spectroscopy and Scanning Electron Microscopy Studies of Au-Ag Bimetallic Nanoboxes and Nanocages

The optical properties of hollow nanoparticles (Au-Ag nanoboxes and nanocages) were investigated by recording Rayleigh scattering spectra of single particles, whose morphology and composition had been analyzed by scanning electron microscopy (SEM). This was achieved by depositing the particles on optically transparent substrates with registration marks, which are compatible with SEM imaging. Fitting the experimental spectra to a Lorentzian function yields the frequencies and homogeneous line widths of the plasmon resonance for the particles. The resonances are extremely broad, with dephasing times of 2-5 fs. Analysis of the line width data using the dimensions determined by SEM shows that the broadening is due to a combination of electron-surface scattering and radiation damping. The sensitivity of the plasmon resonance to the dielectric constant of the environment was also investigated by adding a drop of water to the substrate. The nanoboxes show similar dielectric sensitivities compared to other metal nanoparticle systems. A significant increase in the line width was also observed for the nanoboxes in water compared with air. This was attributed to increased radiation damping in the environment with a higher dielectric constant. Both the red shift and the increase in line width are reversible.     

Calix[n]bispyrrolylbenzenes: synthesis, characterization, and preliminary anion binding studies

A series of novel calixpyrrole-like macrocycles, calix[n]bis(pyrrol-2-yl)benzene (calix[n]BPBs, n=2-4) 9 a-11 a, have been synthesized by means of the TFA-catalyzed condensation reaction of bis(pyrrol-2-yl)benzene 8 a with acetone. Calix[2]BPB 9 a represents an expanded version of calix[4]pyrrole in which two of the four meso bridges are replaced by benzene rings. By contrast, systems 10 a and 11 a, which bear great considerable to calixbipyrroles 2 and 3, represent higher homologues of the basic calix[n]BPB motif. Solution-phase anion binding studies, carried out by means of (1)H NMR spectroscopic titrations in [D2]dichloromethane and isothermal titration calorimetry (ITC) in 1,2-dichloroethane, reveal that 9 a binds typical small anions with substantially higher affinities than 1, even though the same number of hydrogen bonding donor groups are found in both compounds. The basic building block for 9 a, benzene dipyrrole 8 a, also displays a higher affinity for anions than the building block for 1, dimethyldipyrromethane 16. Structural studies, carried out by single-crystal X-ray diffraction analyses, are consistent with the solution-phase results and reveal that 9 a is able to stabilize complexes with chloride and nitrate in the solid state. Structures of the PF6- and NO3- complexes of 10 a were also solved as were those of the acetone adduct of 9 a and the ethyl acetate adduct of 11 a.     

Total synthesis of pyridovericin: studies toward the biomimetic synthesis of pyridomacrolidin

[reaction: see text] The total synthesis of the novel metabolite pyridovericin 1 is reported. The synthesis of this key intermediate in our proposed biomimetic synthesis of pyridomacrolidin 2 has been accomplished in good yield from readily available 2,4-dihydroxypyridine.     

The use of surface tension to predict the formation of 2D arrays of latex spheres formed via the Langmuir-Blodgett-like technique

Highly ordered hexagonal arrays of latex spheres on highly ordered pyrolytic graphite (HOPG) have been prepared from a Langmuir-Blodgett-like (LB-like) technique using both polymers and surfactants as spreading agents. The role of spreading agent concentration in forming a well-ordered, stable monolayer at the air-liquid interface was studied by means of atomic force microscopy, scanning electron microscopy, optical microscopy, and surface tension measurements for three different systems: a nonionic surfactant, octylphenoxy poly(ethyleneoxy)ethanol (Igepal CO 630); an anionic surfactant, sodium dodecyl sulfate; and a low-molecular-weight, water-soluble polymer, polyacrylamide. For both the anionic surfactant and the water soluble polymer, a correlation was found between a unique feature in surface tension measurements of the latex-spreading agent mixture and the concentrations at which hexagonal arrays of latex spheres form on the surface of HOPG. For the nonionic surfactant, no ordered structures were found on HOPG for any surfactant concentration, consistent with no appearance of the unique feature in surface tension measurements. These results show that a tensiometer can be used to determine the conditions under which well-ordered latex films have the possibility of forming on a substrate using the LB-like technique; however, other factors, such as pulling speed and surface chemistry, play a role as well.