Diazocinones: synthesis and conformational analysis

1,2,4,5-Tetrazines (prepared from aryl nitriles) condense with isoxazolylcyclobutanones (prepared from 3-benzenesulfonyl-3-vinylcyclobutanol) in methanolic KOH to give conformationally restricted 6-isoxazol-5-yl-6,7-dihydro-5H-[1,2]diazocin-4-ones. The solution 1H NMR spectra of dihydrodiazocinone 1a with phenyl moieties at C3 and C8 reveal two conformations of the eight-membered heterocycle that are non-interconverting on the NMR time scale at ambient temperature. The kinetics of the conversion process, followed by 1H NMR between 21 and 70 degrees C in DMSO solution, yield an activation energy of approximately 21 kcal/mol relative to the kinetic conformer and show an equilibrated ratio of approximately 5:1 of the thermodynamic to the kinetic conformers. The electronic structure calculations on a model dihydrodiazocinone predict geometries for the two conformations. One of these geometries agrees with the X-ray crystallographic analysis of the thermodynamic conformation of 1a.     

Dynamic shim updating on the human brain

Dynamic alteration of shim settings during a multi-slice imaging experiment can improve static magnetic-field homogeneity over extended volumes. In this report, a pre-emphasized dynamic shim updating (DSU) system capable of rapidly updating all non-degenerate zeroth through second-order shims is presented and applied to high-field multi-slice imaging studies on the human brain. DSU is utilized in both non-oblique and oblique slicing geometries while updating in-plane and through-slice shims. Image-based magnetic-field maps are used to quantify homogeneity improvements and comparisons are made on a slice-specific basis between static global shimming and increasing orders of shim inclusion utilized DSU. The influence of oblique slicing geometry on DSU-utilized global homogeneity is also quantified computationally. Finally, the effect of DSU on susceptibility artifact reduction in single-shot axial-sliced EPI is analyzed using experimental acquisitions.     

Learning to use an artificial visual cue in speech identification

Visual information from a speaker's face profoundly influences auditory perception of speech. However, relatively little is known about the extent to which visual influences may depend on experience, and extent to which new sources of visual speech information can be incorporated in speech perception. In the current study, participants were trained on completely novel visual cues for phonetic categories. Participants learned to accurately identify phonetic categories based on novel visual cues. These newly-learned visual cues influenced identification responses to auditory speech stimuli, but not to the same extent as visual cues from a speaker's face. The novel methods and results of the current study raise theoretical questions about the nature of information integration in speech perception, and open up possibilities for further research on learning in multimodal perception, which may have applications in improving speech comprehension among the hearing-impaired.     

Dual-mode registration of dynamic contrast-enhanced ultrasound combining tissue and contrast sequences

This study proposes a new method for automatic, iterative image registration in the context of dynamic contrast-enhanced ultrasound (DCE-US) imaging. By constructing a cost function of image registration using a combination of the tissue and contrast-microbubble responses, this new method, referred to as dual-mode registration, performs alignment based on both tissue and vascular structures. Data from five focal liver lesions (FLLs) were used for the evaluation. Automatic registration based on the dual-mode registration technique and tissue-mode registration obtained using the linear response image sequence alone were compared to manual alignment of the sequence by an expert. Comparison of the maximum distance between the transformations applied by the automatic registration techniques and those from expert manual registration reference showed that the dual-mode registration provided better precision than the tissue-mode registration for all cases. The reduction of maximum distance ranged from 0.25 to 9.3 mm. Dual-mode registration is also significantly better than tissue-mode registration for the five sequences with p  -values lower than 0.03$0.03$. The improved sequence alignment is also demonstrated visually by comparison of images from the sequences and the video playbacks of the motion-corrected sequences. This new registration technique better maintains a selected region of interest (ROI) within a fixed position of the image plane throughout the DCE-US sequence. This should reduce motion-related variability of the echo-power estimations and, thus, contribute to more robust perfusion quantification with DCE-US.     

Rescue of an abasic hairpin ribozyme by cationic nucleobases: evidence for a novel mechanism of RNA catalysis

The hairpin ribozyme catalyzes a reversible phosphodiester cleavage reaction. We examined the roles of conserved nucleobases in catalysis using an abasic ribozyme rescue strategy. Loss of the active site G8 nucleobase reduced the cleavage rate constant by 350-fold while loss of A9 and A10 nucleobases reduced activity less than 10-fold. Certain heterocyclic amines restored partial activity when provided in solution to the variant lacking G8. Heterocyclic amines that were capable of rescue shared the exocyclic amine and cyclic amide in common with the Watson-Crick hydrogen bonding face of guanine. In contrast to the shallow pH dependence of unmodified ribozyme activity, rescue activity increased sharply with decreasing pH. These results support a novel model for RNA catalysis in which a cationic nucleobase contributes electrostatic stabilization to negative charge developing in the transition state.     

Peptide sequencing using a patchwork approach and surface-induced dissociation in sector-TOF and dual quadrupole mass spectrometers

Surface-induced ion activation in combination with a database search strategy based on the Patchwork concept is applied to the determination of peptide sequences. Surface-induced dissociation (SID) is performed in a tandem quadrupole mass spectrometer and in a hybrid sector/time-of-flight mass spectrometer in order to evaluate the importance of accurate mass analysis of the SID fragment ions for peptide identification. The modified Patchwork approach is based on piecing together the peptide blocks in a bidirectional way, simultaneously using low-mass fragments originating from the C-terminus and N-terminus of the molecule, and relying on the measurement of the peptide's molecular weight with moderate mass accuracy. The results from this analysis are used as search filters in MASCOT's (http://www.matrixscience.com) Sequence Query search engine, with the simultaneous addition of the full MS/MS peak list. SID is performed with collision targets coated with pure and mixed composition self-assembled monolayers produced by fluorocarbon and hydrocarbon alkanethiolate solutions of varying chemical composition. The resulting MS/MS spectra produced on pure and mixed hydrocarbon SAMs are submitted to the modified version of Patchwork sequencing. It is found that hydrocarbon surfaces improve the relative abundance of larger fragments. Under the moderate mass accuracy conditions (±0.3 u) offered by our linear-TOF-SID instrument, it is found that increasing the abundance of larger fragments dramatically improves the sequencing scores.     

Electron impact excitation of the ã (3)B(1u) electronic state in C2H4: an experimentally benchmarked system?

We report on differential and integral cross section measurements for the electron impact excitation of the lowest-lying triplet electronic state (a? (3)B(1u)) in ethylene (C(2)H(4)). The energy range of the present experiments was 9 eV-50 eV, with the angular range of the differential cross section measurements being 15°-90°. As the ground electronic state of C(2)H(4) is a (1)A(g) state, this singlet → triplet excitation process is expected to be dominated by exchange scattering. The present angular distributions are found to support that assertion. Comparison, where possible, with previous experimental results from the University of Fribourg group shows very good agreement, to within the uncertainties on the measured cross sections. Agreement with the available theories, however, is generally marginal with the theories typically overestimating the magnitude of the differential cross sections. Notwithstanding that, the shapes of the theoretical angular distributions were in fact found to be in good accord with the corresponding experimental results.     

Activation of glassy carbon electrodes by alternating current electrochemical treatment

Glassy carbon electrodes subjected to “severe” electrochemical treatment is saturated chloride solutions exhibit enhanced electrochemical reversibility compared to untreated electrodes. Apparently faster rates of electron-transfer result in lowering of the overpotential by 110–300 mV for eight electroactive species tested. Systematic alterations in the response in terms of peak potential, sensitivity, background current, and stability are reported. Scanning electron micrographs show the introduction of pits of random size distribution. From the practical point of view, the most significant improvement is observed in differential pulse measurements, that are highly sensitive to small changes in the rate of electron transfer. In amperometric detection for liquid chromatography, the pretreated electrodes are shown to facilitate the quantitation of different eluting species. It appears that the surface and bulk properties of the glassy carbon have profound effects on the observed behavior.     

Characterization of the Fermi surface of the organic superconductor - by measurements of Shubnikov-de Haas and angle-dependent magnetoresistance oscillations and by electronic band-structure calculations

The electronic structure of the quasi two-dimensional (2D) organic superconductor -(ET)₂SF₅CH₂CF₂SO₃ was examined by measuring Shubnikov-de Haas (SdH) and angle-dependent magnetoresistance (AMRO) oscillations and by comparing with electronic band-structure calculations. The SdH oscillation frequencies follow the angular dependence expected for a 2D Fermi surface (FS), and the observed fundamental frequency shows that the 2D FS is 5% of the first Brillouin zone in size. The AMRO data indicate that the shape of the 2D FS is significantly non-circular. The calculated electronic structure has a 2D FS in general agreement with experiment. From the temperature and angular dependence of the SdH amplitude, the cyclotron and band effective masses were estimated to be and ,where g is the conduction electron g factor and the free electron mass. The band effective mass is estimated to be from the calculated electronic band structure. Received: 3 March 1997 / Revised: 5 May 1997 / Received in final form: 5 November 1997 / Accepted: 10 November 1997     

Goniometry for Interface Studies in Transmission Electron Microscopy

A method using a double-tilt goniometer stage for determining the orientation of crystalline specimens in transmission electron microscopy (TEM) is described. The procedure involves visual identification of two zone axes, and using the corresponding goniometer settings to plot these poles stereographically. Crystal orientations and misorientations can be established rapidly, and the method is intended for use as a practical complement to more precise but time-consuming techniques. The commutative operation of double-tilt stages and their goniometric capability are also discussed. Using Rodrigues-Frank space, it is shown that the set of attainable operations for such stages is represented by points on an hyperboloidal surface.