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991.
Nicoletti FP Droghetti E Boechi L Bonamore A Sciamanna N Estrin DA Feis A Boffi A Smulevich G 《Journal of the American Chemical Society》2011,133(51):20970-20980
The structural and functional properties of the active site of the bacterial hemoglobin from Thermobifida fusca are largely determined by three polar amino acids: TrpG8, TyrCD1, and TyrB10. We have exploited the availability of a combinatorial set of mutants, in each of which these three amino acids have been singly, doubly, or triply replaced by a Phe residue, to perform a detailed study on H-bonding interactions between the protein and heme-bound fluoride. By appropriate choice of the excitation conditions, ν(Fe-F) stretching bands have been detected in the resonance Raman spectra. In the wild-type protein and one of the mutants, two ν(Fe-F) bands have been observed and assigned to the presence of two protein conformers where fluoride is singly or doubly H-bonded. Furthermore, by plotting the CT1 charge-transfer transition energy vs the ν(Fe-F) wavenumbers, an empirical correlation has been found. The data are well fitted by a straight line with a positive slope. The position along the correlation line can be considered as a novel, general spectroscopic indicator of the extent of H-bonding in the active site of heme proteins. In agreement with the spectroscopic results, we have observed that the rate of ligand dissociation in stopped-flow kinetic measurements progressively increases upon substitution of the H-bonding amino acids. Molecular dynamics simulations have been performed on the fluoride complexes of native and mutated forms, indicating the prevalent interactions at the active site. All the techniques yield evidence that TrpG8 and TyrCD1 can form strong H bonds with fluoride, whereas TyrB10 plays only a minor role in the stabilization of the ligand. 相似文献
992.
Dagdug L Berezhkovskii AM Makhnovskii YA Zitserman VY Bezrukov SM 《The Journal of chemical physics》2011,134(10):101102
Using Brownian dynamics simulations, we study the effective mobility and diffusion coefficient of a point particle in a tube formed from identical compartments of varying diameter, as functions of the driving force applied along the tube axis. Our primary focus is on how the driving force dependences of these transport coefficients are modified by the changes in the compartment shape. In addition to monotonically increasing or decreasing behavior of the effective mobility in periodic entropy potentials reported earlier, we now show that the effective mobility can even be nonmonotonic in the driving force. 相似文献
993.
One of the known monoclinic polymorphs of 1,1,4,4-tetraphenyl-1,3-butadiene was grown by the floating-drop technique. This material is of interest for blue emitting devices and for fundamental studies on intermolecular interactions, excited states and vibronic coupling in the fields of chemical physics and materials science. Polarized UV-visible spectra are reported. The origin of the optical bands is resolved. The results give information on the intermolecular interactions and are compared with theoretical predictions and modeling. The full material dielectric tensor is provided, as deduced from generalized spectroscopic ellipsometry. Details on the use of this technique on strongly anisotropic and absorbing molecular materials are given. Some typical features of the optical spectra are also demonstrated to be very sensitive to the presence of misaligned domains, which, in our samples, are found to be rotated around the normal to the surface and whose amount is determined. The method allows discriminating among monocrystals, in-plane polycrystalline samples, layered samples formed by misaligned successive layers, or samples with both types of disorder. Two independent parameters giving the fraction of misaligned domains or layers are suggested for the characterization and optimization of the growth and deposition of molecular organic materials. 相似文献
994.
Dr. Fabio Cucinotta Dr. Fabio Carniato Dr. André Devaux Prof. Dr. Luisa De Cola Prof. Leonardo Marchese 《Chemistry (Weinheim an der Bergstrasse, Germany)》2012,18(48):15310-15315
A new hybrid photostable donor–acceptor mesoporous SBA‐15 silica system was designed and prepared. It consists of an encapsulated donor, the Super Yellow (SY) polymer, which transfers the photoexcitation energy directly to an acceptor dye that is linked outside the framework. The obtained composite material was characterized by X‐ray diffraction, nitrogen‐physisorption porosimetry, diffuse‐reflectance (DR)‐UV/Vis spectroscopy and photoluminescence, space‐ and time‐resolved confocal microscopy. The physico‐chemical analyses showed that the system behaves as an efficient Förster resonance energy transfer (FRET) pair, and high photoluminescence was observed from the acceptor. The presented photonic antenna is the first example of dye sensitization by polymer‐loaded mesoporous silica and represents a step forward in the search for new efficient and stable materials with opto‐electronic applications. 相似文献
995.
996.
Trabocchi A Stefanini I Morvillo M Ciofi L Cavalieri D Guarna A 《Organic & biomolecular chemistry》2010,8(24):5552-5557
A chemical genetics approach has been applied in the screening of yeast deletants strains with a pool of morpholine-derived compounds in order to identify candidate small molecules able to produce phenotypic effects on yeast cells. The analysis of the effects of structurally diverse molecules towards cell growth rate in both exponential and stationary phases provides a tool to select candidate compounds for subsequent assays to identify new chemical entities as chemical probes for drug discovery. 相似文献
997.
Renato Grillo Nathalie F. S. de Melo Daniele R. de Araújo Gustavo H. G. Trossini Elaine F. F. da Cunha Teodorico de Castro Ramalho Leonardo Fernandes Fraceto 《Journal of inclusion phenomena and macrocyclic chemistry》2010,68(3-4):417-421
Nitroheterocyclic compounds (NC) were candidate drugs proposed for Chagas disease chemotherapy. In this study, we investigated the complexation of hydroxymethylnitrofurazone (NFOH), a potential antichagasic compound, with α-cyclodextrin (α-CD), β-cyclodextrin (β-CD), Hydroxypropyl-β-cyclodextrin (HP-β-CD), Dimethyl-β-cyclodextrin (DM-β-CD) and γ-cyclodextrin (γ-CD) by fluorescence spectroscopy and molecular modeling studies. Hildebrand–Benesi equation was used to calculate the formation constants of NFOH with cyclodextrins based on the fluorescence differences in the CDs solution. The complexing capacity of NFOH with different CDs was compared through the results of association constant according to the following order: DM-β-CD > β-CD > α-CD > HP-β-CD > γ-CD. Molecular modeling studies give support for the experimental assignments, in favor of the formation of an inclusion complex between cyclodextrins with NFOH. This is an important study to investigate the effects of different kinds of cyclodextrins on the inclusion complex formation with NFOH and to better characterize a potential formulations to be used as therapeutic options for the oral treatment of Chagas disease. 相似文献
998.
Orazio Nicolotti Ilenia Giangreco Teresa Fabiola Miscioscia Marino Convertino Francesco Leonetti Leonardo Pisani Angelo Carotti 《Journal of computer-aided molecular design》2010,24(2):117-129
Abstract
A series of 27 benzamidine inhibitors covering a wide range of biological activity and chemical diversity was analysed to derive a Linear Interaction Energy in Continuum Electrostatics (LIECE) model for analysing the thrombin inhibitory activity. The main interactions occurring at the thrombin binding site and the preferred binding conformations of inhibitors were explicitly biased by including into the LIECE model 10 compounds extracted from X-ray solved thrombin-inhibitor complexes available from the Protein Data Bank (PDB). Supported by a robust statistics (r 2 = 0.698; q 2 = 0.662), the LIECE model was successful in predicting the inhibitory activity for about 76% of compounds (r ext2 ≥ 0.600) from a larger external test set encompassing 88 known thrombin inhibitors and, more importantly, in retrieving, at high sensitivity and with better performance than docking and shape-based methods, active compounds from a thrombin combinatorial library of 10240 mimetic chemical products. The herein proposed LIECE model has the potential for successfully driving the design of novel thrombin inhibitors with benzamidine and/or benzamidine-like chemical structure. 相似文献999.
Sigifredo Padilla Tatiana Alvarez Williams Ferro Yarysel Guevara José Montero Leonardo Gómez David Gavilán Elio Espinosa Yenisleydis Avila Tatiana González Regla Somoza Maylín LaO Rodolfo Valdés 《Chromatographia》2010,72(1-2):121-125
Several plant-derived antibody (plantibody) purification approaches have been assessed demonstrating high purification capacities, but low recoveries (<30%) and poor sorbent stability. Thus, application of sorbents with high recovery, low ligand leakage and stable under harsh sanitization conditions could improve the efficiency antibody purification from this source. This paper reports for the first time MAbsorbents assessments in plantibody purification from tobacco plants. In conclusion MAbsorbent A1P is not suitable for plantibody HB-01 purification, while MAbsorbent A2P demonstrated high recovery (37.54 ± 15.15%) in 25 purification cycles. As recommendation, we consider that other elution conditions should be assessed before restudy the stability of this sorbent. 相似文献
1000.