Unexpected preference of the E. coli translation system for the ester bond during incorporation of backbone-elongated substrates

There have been recent advances in the ribosomal synthesis of various molecules composed of nonnatural ribosomal substrates. However, the ribosome has strict limitations on substrates with elongated backbones. Here, we show an unexpected loophole in the E. coli translation system, based on a remarkable disparity in its selectivity for beta-amino/hydroxy acids. We challenged beta-hydroxypropionic acid (beta-HPA), which is less nucleophilic than beta-amino acids but free from protonation, to produce a new repertoire of ribosome-compatible but main-chain-elongated substrates. PAGE analysis and mass-coupled S-tag assays of amber suppression experiments using yeast suppressor tRNAPheCUA confirmed the actual incorporation of beta-HPA into proteins/oligopeptides. We investigated the side-chain effects of beta-HPA and found that the side chain at position alpha and R stereochemistry of the beta-substrate is preferred and even notably enhances the efficiency of incorporation as compared to the parent substrate. These results indicate that the E. coli translation machinery can utilize main-chain-elongated substrates if the pKa of the substrate is appropriately chosen.     

Well-crystallized zinc oxide quantum dots with narrow size distribution

In this study, pulsed laser ablation, online annealing, and following size classification using a differential mobility analyzer (DMA) were employed to fabricate quantum dots (QDs) of zinc oxide (ZnO). The irregularly shaped ZnO particles were obtained at annealing temperature less than 873 K, which gradually transformed into spherical QDs with increasing the annealing temperature. Finally, ZnO QDs with narrow size distribution having spherical shapes were successfully obtained at temperatures above 1173 K under the DMA classification at a nominal size of 10 nm. TEM observation demonstrated that the ZnO QDs obtained by this process were well-crystallized single crystallites with a wurtzite structure. Further, ZnO QDs with average sizes in the range of 4.8–8.1 nm were successfully fabricated by reducing the specified sizes of DMA. These features of the fabricated ZnO QDs are favorable for investigation of intrinsic quantum size effect in ZnO.     

Targeting of sebocytes by aminolevulinic acid-dependent photosensitization

Photodynamic therapy using 5-aminolevulinic acid-induced protoporphyrin IX has been developed as a very useful therapeutic modality. Recently, several authors have reported on the efficacy of this procedure for acne. This approach is based on the fact that 5-aminolevulinic acid-induced protoporphyrin IX has strong selectivity for sebaceous glands. We used the immortalized human sebaceous gland cell line SZ95 to investigate cellular mechanisms of photodynamic therapy using 5-aminolevulinic acid-induced protoporphyrin IX. Quantification of induced protoporphyrin IX production showed dependence on the applied 5-aminolevulinic acid dose. When SZ95 sebocytes were differentiated by arachidonic acid treatment, there was no difference between them and the control cells with respect to both the amount of 5-aminolevulinic acid-induced protoporphyrin IX and the phototoxic effects. We altered protoporphyrin IX formation rates by growing cells scattered as single cells in the culture dishes. Single cells produced significantly lower protoporphyrin IX levels than those grown with intercellular contacts. Intracellular localization of protoporphyrin IX was imaged using confocal laser scanning microscopy. The differentiation-specific lipid droplets were virtually excluded from protoporphyrin IX fluorescence. In addition to weak mitochondrial and strong membrane fluorescence, distinctive spots with strong fluorescence were observed. These did not colocalize with fluorescent probes for mitochondria, lysosomes or the Golgi apparati.     

X-ray illumination induced Fe(II) spin crossover in the Prussian blue analogue cesium iron hexacyanochromate

The effect of X-ray illumination on the structural properties of the mixed valence Prussian blue analogue CsFe(II)[Cr(III)(CN)6] has been studied by time-dependent high-resolution synchrotron X-ray diffraction. Abrupt isosymmetric phase transitions, accompanied by dramatic volume collapse, were found in the temperature range 245-265 K, induced by sudden Fe(II) spin transitions from the high spin (HS) (4t(2g)2e(g), S = 2) to the low spin (LS) (6t(2g)0e(g), S = 0) configuration. Absorption of X-ray photons generates photoexcited Fe(II)(LS) domains whose size rapidly grows with time until the percolation threshold is reached and the structure collapse is triggered. The persistent character of the optically excited spin crossover states derives from the strong electron-phonon coupling, associated with the large lattice relaxations, which accompany the internal spin rearrangements. It is thus possible to use X-ray light in a controllable and efficient way to induce photoswitching between the ground and hidden or inaccessible excited states in suitably selected multistable materials in the bulk.     

Synthesis, structural characterization, and catalytic performance of dititanium-substituted gamma-Keggin silicotungstate

A novel titanium-substituted silicotungstate cluster of [{gamma-SiTi2W10O36(OH)2}2(mu-O)2]8- (1) is synthesized by the introduction of titanium(IV) ions into a divacant lacunary gamma-Keggin-type silicotungstate of [gamma-SiW10O36]8-. This titanium-substituted polyoxometalate, 1, exhibits a dimeric structure. One half of the gamma-Keggin fragment of 1 contains a dinuclear titanium center bridged by two hydroxo groups, and the resulting Ti2(mu-OH)2 core connects to the other Ti2(mu-OH)2 core of the paired gamma-Keggin subunit through Ti-O-Ti linkages. The Ti2(mu-OH)2 core of 1 reacts with MeOH to form the corresponding alkoxo derivative, [{gamma-SiTi2W10O36(OH)(OMe)}2(mu-O)2]8- (2). Two of four hydroxo groups of the Ti2(mu-OH)2 cores in 1 are replaced by methoxo groups to give the Ti2(mu-OH)(mu-OMe) core, and the Ti-O-Ti linkages connecting two gamma-Keggin subunits are maintained in 2. The gamma-Keggin dititanium-substituted silicotungstate 1 catalyzes mono-oxygenation reactions, such as the epoxidation of olefins and sulfoxidation of sulfides with hydrogen peroxide under mild conditions, while the monotitanium-substituted silicotungstate, [alpha-SiTiW11O39]4- (3), and the fully occupied silicododecatungstate, [gamma-SiW12O40]4-, are inactive. The epoxidation with 1 is stereospecific; the configurations around the C=C double bonds of the cis- and trans-olefins are completely retained in the corresponding epoxides. For the competitive epoxidation of cis- and trans-2-octenes, the ratio of the formation rate of cis-2,3-epoxyoctane to that of the trans isomer (R(cis)/R(trans)) is relatively high (21.3) in comparison with those observed for the tungstate catalysts, including [gamma-SiW10O34(H2O)2]4-. The epoxidation of 3-methyl-1-cyclohexene is highly diastereoselective and gives the corresponding epoxide with an anti configuration. The molecular structure of 1 is preserved during the catalysis because the 29Si and 183W NMR spectra of the catalyst recovered after completion of the oxidation are consistent with those of as-prepared compound 1. All these facts suggest the contribution of rigid nonradical oxidants generated on the multinuclear titanium center of 1.     

Influence of Gravitational Settling on Turbulent Droplet Clustering and Radar Reflectivity Factor

This study investigates the influence of gravitational settling of droplets on turbulent clustering and the radar reflectivity factor. A three-dimensional direct numerical simulation (DNS) of particle-laden isotropic turbulence is performed to obtain turbulent droplet clustering data. The turbulent clustering data are then used to calculate the power spectrum of droplet number density fluctuations. The results show that the gravitational settling modulates the power spectrum more significantly as the settling becomes larger. The gravitational settling weakens the intensity of clustering at large wavenumbers for St≤1, whereas it significantly enlarges the intensity for St>1. The dependence on the Taylor-microscale-based Reynolds number is also investigated to discuss the contribution of large-scale eddies to the settling influence. The results show that large-scale eddies modulate the small scale clustering structure of large St droplets. The increment of radar reflectivity factor due to turbulent clustering is estimated from the power spectrum for the case of St=1.0. The result shows that the influence of gravitational settling on the radar reflectivity factor can be significant for the case of large settling velocity droplets.     

Detailed Cloud Microphysics Simulation for Investigation into the Impact of Sea Spray on Air-Sea Heat Flux

This paper reports on the development of a numerical weather simulation model combined with a detailed spectral-bin cloud microphysics model that can explicitly consider the droplet motion and droplet-atmosphere interactions of sea spray. Sea spray is composed of liquid droplets ejected from the sea surface into the evaporation layer, where it enhances heat as well as momentum exchanges between the atmosphere and the sea. In our study, we analyzed the results of idealized 3D simulations to investigate the impact of sea spray on latent heat exchanges and their consequent impact on boundary layer cloud development. The results show that sea spray enhances the latent heat flux by up to 62 % for the surveyed 10m-height velocities, which ranged from 12 to 42 m/s. They also show that sea spray moistening significantly enhances boundary layer cloud development.     

Monitoring the hydration of DNA self-assembled monolayers using an extensional nanomechanical resonator

We have fabricated an ultrasensitive nanomechanical resonator based on the extensional vibration mode to weigh the adsorbed water on self-assembled monolayers of DNA as a function of the relative humidity. The water adsorption isotherms provide the number of adsorbed water molecules per nucleotide for monolayers of single stranded (ss) DNA and after hybridization with the complementary DNA strand. Our results differ from previous data obtained with bulk samples, showing the genuine behavior of these self-assembled monolayers. The hybridization cannot be inferred from the water adsorption isotherms due to the low hybridization efficiency of these highly packed monolayers. Strikingly, we efficiently detect the hybridization by measuring the thermal desorption of water at constant relativity humidity. This finding adds a new nanomechanical tool for developing a label-free nucleic acid sensor based on the interaction between water and self-assembled monolayers of nucleic acids.