Modified valence indices from the two-particle density matrix

The modified ionic and covalent valence indices are introduced, defined in the framework of the two-particle density matrix, with respect to the reference state of separated atoms or ions (SAL ). They include only quadratic contributions in changes of the molecular charge-and-bond order matrix elements, relative to the SAL . General properties of the modified valence indices are examined and illustrative qualitative results for model systems are presented. Numerical UHF SCF MO valence data for selected diatomic and triatomic molecules are reported and interpreted in terms of the valence saturation effect and the ionic vs. covalent valence competition. A three-orbital valence model of a symmetric transition state of the bond-forming–bond-breaking reaction supports the BEBO model postulate of preservation of the total “bond order.” The model predictions are compared with the UHF numerical values. © 1994 John Wiley & Sons, Inc.     

N,N-Dialkylierte N′-Ferrocenoylthioharnstoffe und Ferrocen-1,1′-dicarbonsäure-di-N,N-dialkyl-thioureide als Liganden für Übergangsmetalle: Darstellung,pH-potentiometrische,röntgenkristallstrukturanalytische und EPR-Einkristalluntersuchungen

N,N-Dialkyl-N′-ferrocenoylthioureas and Ferrocene-1,1′ -dicarbonic-acid-di-N,N-dialkylthioureides as Ligands for Transition Metals: Synthesis, Acid-Dissociation Constants, X-Ray Structure Determination, and EPR-Single Crystal Investigation Reaction of ferrocenoylisothiocyanate or ferrocene-1,1′ -dicarbonic acid -diisothiocyanate with secondary amines gives N,N-dialkyl-N′ -ferrocenoylthioureas or the respective ferrocene-1,1′-dicarbonic acid-di-N,N-dialkyl-thioureides. The former yield neutral complexes with transition metal ions (Ni²⁺, Cu²⁺, Co³⁺, Pt²⁺, Fe³⁺). The acid dissociation constants of the ligands were determined. The EPR spectra of a bis-(N,N-diⁿbutyl-N′-ferrocenoylthioureato)copper(II) single crystal are discussed. The X-ray structure determination of ferrocene-1,1′-dicarbonic acid-di-N,N-diethyl-thioureide and its different behaviour against Ni²⁺ and Cu²⁺ is presented.     

Crystal structure of supramolecular complexes formed by 18-crown-6 andcis-anti-cis-dicyclohexano-18-crown-6 (host) with 3,4-diaminofurazane (guest)

An X-ray—diffraction study is reported for two molecular complexes containing 3,4-diamino-1,2,5-oxadiazole as guest (G) with 18-crown-6 (18-C-6) andcis-anti-cis-dicyclohexano-18-crown-6 (DCH-6B) as host. Both complexes are of the polymeric-chain structure with the guest molecule bridging two crown neighbours. ComplexI: [18-C-6*G*H₂O], 111, monoclinic,P2₁/n,a=8.171(1),b=15.042(2),c=16.209(6) Å, =101.15(2)°, finalR-factor 0.068. ComplexII: [DCH-6B*G], 11, monoclinicC2/c,a=21.212(4),b=9.380(2),c=13.049(3) Å, =108.61(3)°, finalR 0.047.     

Einfluß zweiwertiger Anionen auf die Filmdruck-Flächenbedarfs-Isothermen von gespreiteten Octadecylamin-Monoschichten

Zusammenfassung Durch den Einsatz zweiwertiger Ionen in der wäßrigen Subphase kann die Packungsdichte gespreiteter Monoschichten wasserunlöslicher Tenside pH-abhän-gig erhöht werden. Ergebnisse für Octadecylamin auf einer Lösung von Natriumhydrogensphosphat werden angegeben.

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Summary The packing density of spread monolayers of waterinsoluble surface-active agents can be increased by use of bivalent ions in the aqueous subphase. Results for octadecyl amine spread on a solution of sodium hydrogen phosphate are given.

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Bis-substituted benzo-15-crown-5 ethers as ion carriers in potassium ion-selective electrodes

Lipophilic bis-substituted ester and ether derivatives of benzo-15-crown-5 have been synthesised. The correlation between the structure and potentiometric ion-selectivity has been studied in PVC membrane ion-selective electrodes. An ion-selective potassium sensitive electrode based on 4,5-bis (biphenyloxymethyl)benzo-15-crown-5 exhibited the best electrode properties. The detection limit was loga _K = -5.4; logK _K,Na ^ppot = -3.5. The effect of the lipophilicity of neutral carriers upon electrode performance has been also discussed.     

Simple diffuse reflectance UV-vis spectroscopic determination of organic pigments (fringelites) in fossils

To screen for organic pigments, like fringelites or porphyrins, in sediments and fossil specimen, a simple diffuse reflectance UV-vis spectroscopic determination was developed. In contrast to common inorganic pigments, like Fe₂O₃, these pigments exhibit well-structured characteristic absorption peaks which allow their recognition. This method was then used to identify fringelite H in a non-crinoidSolenopora species from the Jurassic. Reflectance FTIR spectroscopy proved not to be useful for this purpose.     

Crystallographic and bioinformatic studies on restriction endonucleases: inference of evolutionary relationships in the "midnight zone" of homology

Type II restriction endonucleases (ENases) cleave DNA with remarkable sequence specificity. Their discovery in 1970 and studies on molecular genetics and biochemistry carried out over the past four decades laid foundations for recombinant DNA techniques. Today, restriction enzymes are indispensable tools in molecular biology and molecular medicine and a paradigm for proteins that specifically interact with DNA as well as a challenging target for protein engineering. The sequence-structure-function relationships for these proteins are therefore of central interest in biotechnology. However, among numerous ENase sequences, only a few exhibit statistically significant similarity in pairwise comparisons, which was initially interpreted as evidence for the lack of common origin. Nevertheless, X-ray crystallographic studies of seemingly dissimilar type II ENases demonstrated that they share a common structural core and metal-binding/catalytic site, arguing for extreme divergence rather than independent evolution. A similar nuclease domain has been also identified in various enzymes implicated in DNA repair and recombination. Ironically, following the series of crystallographic studies suggesting homology of all type II ENases, bioinformatic studies provided evidence that some restriction enzymes are in fact diverged members of unrelated nuclease superfamilies: Nuc, HNH and GIY-YIG. Hence, the restriction enzymes as a whole, represent a group of functionally similar proteins, which evolved on multiple occasions and subsequently diverged into the "midnight zone" of homology, where common origins within particular groups can be inferred only from structure-guided comparisons. The structure-guided approaches used for this purpose include: identification of functionally important residues using superposition of atomic coordinates, alignment of sequence profiles enhanced by secondary structures, fold recognition, and homology modeling. This review covers recent results of comparative analyses of restriction enzymes from the four currently known superfamilies of nucleases with distinct folds, using crystallographic and bioinformatic methods, with the emphasis on theoretical predictions and their experimental validation by site-directed mutagenesis and biochemical analyses of the mutants.     

Synthesis and properties of water-soluble gold colloids covalently derivatized with neutral polymer monolayers

Citrate-capped gold nanoparticles as well as planar gold surfaces can be efficiently grafted with a covalently attached polymer monolayer a few nanometers thick, by simple contact of the metal surface with dilute aqueous solutions of hydrophilic polymers that are end-capped with disulfide moieties, as shown by UV/vis absorption, dynamic light scattering, and surface plasmon resonance studies. The hydrophilic polymer-coated gold colloids can be freeze-dried and stored as powders that can be subsequently dissolved to yield stable aqueous dispersions, even at very large concentrations. They allow for applying filtrations, gel permeation chromatography, or centrifugation. They do not suffer from undesirable nonspecific adsorption of proteins while allowing the diffusion of small species within the hydrogel surface coating. In addition, specific properties of the original hydrophilic polymers are retained such as a lower critical solution temperature. The latter feature could be useful to enhance optical responses of functionalized gold surfaces toward interaction with various substrates.     

3-Diethylamino-5-phenyl-1,2,4-diselenazolium-tetrachloroniccolat(II) — Synthese und Struktur

3-Diethylamino-5-phenyl-1,2,4-diselenazolium-tetrachloroniccolate(II) — Synthesis and Structure Bis-(N′, N′-diethyl-N-benzoylselenoureato)nickel(II) reacts with diphosgene in benzene to 3-diethylamino-5-phenyl-1,2,4-diselenazolium-tetrachloroniccolate(II). Its structure is confirmed by RKSA and ESCA. The compound consists of cations, which are planar fivemembered rings and of tetrahedral tetrachloroniccolate(II) anions. The complex is isomorphic with 3-diethylamino-5-phenyl-1,2,4-dithiazolium-tetrachloroniccolate(II).     

2,3‐Difluoro‐4‐formyl­phenyl­boronic acid

The mol­ecule of the title compound, 2,3‐F₂‐4‐(CHO)C₆H₂B(OH)₂ or C₇H₅BF₂O₃, contains a formyl group coplanar with the benzene ring. The boronic acid group is twisted with respect to the benzene ring plane. The mol­ecules are organized into infinite chains via inter­molecular O—H⋯O hydrogen bonds. These chains are additionally connected via strong O—H⋯O hydrogen bonds, producing a folded layer structure perpendicular to the a axis. These layers are paired due to B⋯F inter­actions.