An efficient unnatural base pair for PCR amplification

Expansion of the genetic alphabet by an unnatural base pair system provides a powerful tool for modern biotechnology. As an alternative to previous unnatural base pairs, we have developed a new pair between 7-(2-thienyl)imidazo[4,5-b]pyridine (Ds) and 2-nitropyrrole (Pn), which functions in DNA amplification. Pn more selectively pairs with Ds in replication than another previously reported pairing partner, pyrrole-2-carbaldehyde (Pa). The nitro group of Pn efficiently prevented the mispairing with A. High efficiency and selectivity of the Ds-Pn pair in PCR amplification were achieved by using a substrate mixture of the gamma-amidotriphosphate of Ds and the usual triphosphates of Pn and the natural bases, with Vent DNA polymerase as a 3' to 5' exonuclease-proficient polymerase. After 20 cycles of PCR, the total mutation rate of the Ds-Pn site in an amplified DNA fragment was approximately 1%. PCR amplification of DNA fragments containing the unnatural Ds-Pn pair would be useful for expanded genetic systems in DNA-based biotechnology.     

Use of Transmission Electron Microscopy in Combinatorial Studies of Functional Oxides

Summary: The principles of combinatorial methodology are based on high‐throughput properties measurements (HTPM) of multiple compositions in combinatorial libraries, and are recently being increasingly applied in materials research. Nevertheless, the authors' view is that the involvement of detailed but time‐consuming investigation using transmission electron microscopy (TEM) should be an important part of combinatorial materials research. In this paper we present three examples from our combinatorial studies where the TEM investigation was essential in obtaining a detailed picture of microstructures and their relationship with the physical properties. In the study of microwave dielectrics such as BaTiO₃‐SrTiO₃, TEM provides essential information on the type and distribution of defects in the deposited films. In the case of the wide‐band semiconductor ZnO‐MgO, the distribution and morphology of the phases were studied and related to the measured electronic properties. Study of the manganates LaMnO₃‐CaMnO₃ with colossal magneto‐resistive properties showed an anisotropic distribution of the structural domains and the morphology of the film. The distribution of the domains and the absence of epitaxial stresses found are essential in the interpretation of magnetic measurements.

Cross‐sectional TEM (dark field) micrograph taken with the reflection of h‐(Zn,Mg)O at x = 0.5.     

Organic hybrid of chlorinated polyethylene and hindered phenol. II. Influence of the chemical structure of small molecules on viscoelastic properties

The viscoelastic properties and stabilities of those properties of organic hybrids consisting of chlorinated polyethylene (CPE) and tetrakis[methylene‐3‐(3‐5‐di‐tert‐butyl‐4‐hydroxy phenyl)propionyloxy]methane (AO‐60) and triethylene glycol bis[3‐(3‐tert‐butyl‐4‐hydroxy‐5‐methyl phenyl)propionyloxy] (AO‐70) were investigated. The CPE/AO‐70 hybrids show only one transition, whereas for the CPE/AO‐60 hybrids, one novel relaxation appears above the glass‐transition temperature of CPE. This relaxation on the higher temperature side in the mechanical spectrum for CPE/AO‐60 is associated with the appearance of the AO‐60‐rich phase. Furthermore, the stabilities of the viscoelastic properties and microstructures of the organic hybrids consisting of CPE and multifunctional hindered phenols are dominated by the strength of the intermolecular interaction between CPE and phenols and the conformations of the middle skeletal parts of hindered phenols. © 2000 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 38: 1496–1503, 2000     

Study on the effect of sound duration on the annoyance of helicopter noise by applying a technique of time compression and expansion of sound signals

The number of helicopter operations has rapidly increased during the last 20 years in Japan. Helicopter noise sounds different from other aircraft; the waveform of the sound pressure is impulsive and the signal duration is relatively long. The Environmental Agency of Japan implemented new guidelines for evaluating noise exposure around small airports, including heliports, in 1990. This study was executed in connection with the development of provisional guidelines. Psychoacoustic experiments were carried out to identify an evaluation index for helicopter noise. In order to examine the effect of duration independently, we not only used original sound recordings, but also synthesized sound signals. The durations of these sound signals were time compressed or expanded without degrading the quality of the original sound recording. The test results show that the effect of duration is significant, and that the A-weighted sound exposure level is a better index than the maximum A-weighted sound pressure level for the evaluation of helicopter noise.     

Photoinduced hydrogen production by direct electron transfer from photosystem I cross-linked with cytochrome c3 to [NiFe]-hydrogenase

The photosynthetic reaction center is an efficient molecular device for the conversion of light energy to chemical energy. In a previous study, we synthesized the hydrogenase/photosystem I (PSI) complex, in which Ralstonia hydrogenase was linked to the cytoplasmic side of Synechocystis PSI, to modify PSI so that it photoproduced molecular hydrogen (H2). In that study, hydrogenase was fused with a PSI subunit, PsaE, and the resulting hydrogenase-PsaE fusion protein was self-assembled with PsaE-free PSI to give the hydrogenase/PSI complex. Although the hydrogenase/PSI complex served as a direct light-to-H2 conversion system in vitro, the activity was totally suppressed by adding physiological PSI partners, ferredoxin (Fd) and ferredoxin-NADP+-reductase (FNR). In the present study, to establish an H2 photoproduction system in which the activity is not interrupted by Fd and FNR, position 40 of PsaE from Synechocystis sp. PCC6803, corresponding to the Fd-binding site on PSI, was selected and targeted for the cross-linking with cytochrome c3 (cytc3) from Desulfovibrio vulgaris. The covalent adduct of cytc3 and PsaE was stoichiometrically assembled with PsaE-free PSI to form the cytc3/PSI complex. The NADPH production by the cytc3/PSI complex coupled with Fd and FNR decreased to approximately 20% of the original activity, whereas the H2 production by the cytc3/PSI complex coupled with hydrogenase from Desulfovibrio vulgaris was enhanced 7-fold. Consequently, in the simultaneous presence of hydrogenase, Fd, and FNR, the light-driven H2 production by the hydrogenase/cytc3/PSI complex was observed (0.30 pmol Hz/mg chlorophyll/h). These results suggest that the cytc3/PSI complex may produce H2 in vivo.     

Design, synthesis, and biological evaluations of aplyronine A-mycalolide B hybrid compound

A hybrid compound consisting of aplyronine A and mycalolide B was synthesized, and its biological activities were evaluated. The hybrid compound was found to have somewhat more potent actin-depolymerizing activity than aplyronine A. In contrast, the hybrid compound possessed about 1000-fold less cytotoxicity than aplyronine A. These results indicated that there is no direct correlation between actin-depolymerizing activity and cytotoxicity.