High resolution mass spectrometric studies of some bicyclic γ-lactones

The mass spectra of three bicyclic γ-lactones have been studied, and the fragmentation pathways have been proposed with the aid of accurate mass measurements and metastable transitions. An unusually low [M ? CH₃] ion and the presence of an abundant [M ? C₅H₉] ion in the mass spectrum of dihydroactinidiolide were interpreted as a possible rearrangement involving a methyl migration. The eliminations of methyl radical, carbon monoxide and ketene are important processes in many cases.     

Rhodopsin reconstituted into a planar-supported lipid bilayer retains photoactivity after cross-linking polymerization of lipid monomers

Transmembrane proteins (TMPs), particularly ion channels and receptors, play key roles in transport and signal transduction. Many of these proteins are pharmacologically important and therefore targets for drug discovery. TMPs can be reconstituted in planar-supported lipid bilayers (PSLBs), which has led to development of TMP-based biosensors and biochips. However, PSLBs composed of natural lipids lack the high stability desired for many technological applications. One strategy is to use synthetic lipid monomers that can be polymerized to form robust bilayers. A key question is how lipid polymerization affects TMP structure and activity. In this study, we have examined the effects of UV polymerization of bis-Sorbylphosphatidylcholine (bis-SorbPC) on the photoactivation of reconstituted bovine rhodopsin (Rho), a model G-protein-coupled receptor. Plasmon-waveguide resonance spectroscopy (PWR) was used to compare the degree of Rho incorporation and activation in fluid and poly(lipid) PSLBs. The results show that reconstitution of Rho into a supported lipid bilayer composed only of bis-SorbPC, followed by photoinduced lipid cross-linking, does not measurably diminish protein function.     

Synthesis of tricyclic phospholene oxides by cycloaddition of phosphorus halides with heterocyclic analogs of 1-vinyl-3,4-dihydronaphthalenes

Replacement of C-4 with a hetero substituent (NR,O,S) in the 1-vinyl-3,4-dihydronaphthalene system has provided a new type of diene for participation in the McCormack cycloaddition reaction with P(III) halides. The tricyclic phospholene oxides so obtained are the first to bear an additional heteroatom in the ring system. 1,2-Dihydro-7-methoxy-1-(p-toluenesulfonyl)-4-vinylquinoline is a stable solid that reacts with methylphosphonous dichloride to give, after hydrolysis of the cycloadduct, the 1,2,4,5-tetrahydro-1H-phospholo-[2,3-c]quinoline ring system. The dihydroquinoline moiety was aromatized by detosylation with potassium t-butoxide. The tendency of 4-vinyl-2H-benzopyran to dimerize was a serious complication in its use, and the cycloaddition with methylphosphonous dichloride proceeded only in low yield. The product, a 2,3,3a,4-tetra-hydrobenzo[3,2-d]pyran derivative, was a stable, easily purified and characterized substance. 4-Vinyl-2H-benzo[b]thiopyran was more stable than the pyran, but the phospholo derivative from reaction with methylphosphonous dichloride was more difficult to purify. All products were characterized by ¹³C-nmr spectroscopy.     

Crystal and molecular structure, and P N.M.R. characteristics of di-μ-chlorodi(propionyl)bis(dimethylphenylphosphine)diplatinum(III). Trans-influence of ligands in binuclear complexes

The known complex, $\text{trans}$-(η-C₅H₅)₂Rh₂(CO)₂(CF₃C₂CF₃) is formed in high yield from (η-C₅H₅)Rh(CO)₂ and CF₃FCCF₃ at 100°. The less stable $\text{cis}$-isomer of the complex is obtained in low yield from the same reaction. The infrared, ¹H, ¹⁹F and ¹³C NMR spectra of the two isomers are compared. The $\text{trans}$-isomer undergoes CO scrambling in solution at room temperature, and the variable temperature ¹³C NMR spectra are consistent with a pairwise bridge opening and closing mechanism. The mechanism is extended to account for the isomerization of $\text{cis}$ to $\text{trans}$ isomer, whihc has a half-life of 12 h at room temperature. The ¹³C spectrum indicates that the $\text{cis}$-isomer is static in solution at room temperature. The $\text{trans}$-isomer is reversibly protonated by protonic acids, and BF₄^? and PF₆^? salts of the protonated species can be isolated. The spectroscopic properties of these salts are consistent with protonation at one of the alkynyl-carbons, but it is not possible to distinguish between two alternative structures for the complex cation.Treatment of (η-C₅H₅)₂Rh₂(CO)₂(CF₃C₂CF₃) with (η-C₅H₅)Rh(CO)₂ gives the trinuclear complex (η-C₅H₅)₃Rh₃(CO)(CF₃C₂CF₃) in 80% yield. The analogoug but-2-yne complex is formed from (η-C₅H₅)₃Rh₃(CO)₃ and MeCCMe. The infrared, ¹H, ¹⁹F and ¹³C NMR spectra indicate that the hexafluorobut-2-yne complex exists in two different structural arrangements in solution. One has an edge bridging, and the other a face bridging carbonyl. The proportion of the isomers is affected by the solvent polarity. The spectra of the but-2-yne complex indicate it is fluxional at room temperature, and has a face bridging structure in solution regardless of the polarity of the solvent. Reversible protonation of the hexafluorobut-2-yne complex occurs in protonic acids, and the salt [(η-C₅H₅)₃Rh₃(CO)(CF₃C₂CF₃)H]⁺[BF₄]^?,H₂O can be isolated. The spectroscopic properties of this complex are consistent with a structure incorporating an edge-bridging carbonyl, and probably, an edge-bridging hydride ligand.     

Lamination method for the study of interfaces in polymeric thin film transistors

A method for the fabrication of polymeric thin-film transistors (TFTs) by lamination is described. Poly(dimethylsiloxane) stamps were used to delaminate thin films of semiconducting polymers from silicon wafers coated with a self-assembled monolayer (SAM) formed from octyltrichlorosilane. These supported films were laminated onto electrode structures to form coplanar TFTs. The fabrication process was used to make TFTs with poly(3-hexylthiophene), P3HT, and poly[5,5'-bis(3-dodecyl-2-thienyl)-2,2'-bithiophene], PQT-12. TFTs, where these polymers were laminated onto gate dielectrics coated with SAMs from octyltrichlorosilane, had effective field-effect mobilities of 0.03 and 0.005 cm2/(V s), respectively. TFTs where PQT-12 was laminated onto gate dielectrics that were not coated with a SAM also had mobility of 0.03 cm2/(V s). In contrast, TFTs fabricated by spin-coating PQT-12 onto the same structure had mobilities ranging from 10-3 to 10-4 cm2/(V s). These results suggest that the lower mobilities of polymer TFTs made with hydrophilic gate dielectrics are caused by molecular ordering in the semiconducting film rather than electronic effects of dipolar groups at the interface.     

The magnetic susceptibilities of cobaltocene and chromocene

The magnetic susceptibilities of cobaltocene and chromocene have been measured between 83 and 293 K; for cobaltocene the results suggest an appreciable orthorhombic splitting of the ²∏(σ²πδ⁴ ground state, whilst for chromocene the data provide further support for the ³Δ(σδ³) ground state previously deduced.     

Targeting structural features of viral genomes with a nano-sized supramolecular drug

RNA targeting is an exciting frontier for drug design. Intriguing targets include functional RNA structures in structurally-conserved untranslated regions (UTRs) of many lethal viruses. However, computational docking screens, valuable in protein structure targeting, fail for inherently flexible RNA. Herein we harness MD simulations with Markov state modeling to enable nanosize metallo-supramolecular cylinders to explore the dynamic RNA conformational landscape of HIV-1 TAR untranslated region RNA (representative for many viruses) replicating experimental observations. These cylinders are exciting as they have unprecedented nucleic acid binding and are the first supramolecular helicates shown to have anti-viral activity in cellulo: the approach developed in this study provides additional new insight about how such viral UTR structures might be targeted with the cylinder binding into the heart of an RNA-bulge cavity, how that reduces the conformational flexibility of the RNA and molecular details of the insertion mechanism. The approach and understanding developed represents a new roadmap for design of supramolecular drugs to target RNA structural motifs across biology and nucleic acid nanoscience.

MD simulations and Markov state modeling explore induced fit binding of metallo-helicates to bulges in dynamic TAR RNA, reproduce experimental data, show how RNA conformational flexibility is reduced, and give mechanistic insight into insertion.     

Intramolecular Diels-Alder and tandem intramolecular Diels-Alder/1,3-dipolar cycloaddition reactions of 1,3,4-oxadiazoles

The scope of intramolecular Diels-Alder and a novel tandem Diels-Alder/1,3-dipolar cycloaddition cascade of 1,3,4-oxadiazoles is disclosed. In the cases examined, the tandem cycloadditions construct three new rings with formation of four new C-C bonds and set all six stereocenters about a central six-membered ring in a single step including three contiguous and four total quaternary centers without a trace of a second diastereomer.     

CAROTENE and CYTOCHROME C DEPENDENT SURVIVAL KINETICS IN RESPONSE TO HIGH INTENSITY VISIBLE LIGHT IN THE SMUT FUNGUS Ustilago violacea

Abstract— Exposure of variously pigmented strains of Ustilago violacea to high intensity incandescent radiation resulted in the generation of three types of survival curves. High carotene, low cytochrome c containing strains of U. violacea were generally characterized by linear type I survival curves with slopes approximately equal to zero. Strains which lacked carotenes were characterized by exponential decay type II survival curves. A third survival curve, type III was observed with carotene accumulating strains which also contained large amounts of cytochrome c. The type III curves are characterized by an initial loss of viability, similar to the type II curves, followed by a recovery period, with eventual stability in survival. The survival curve type appears to be dependent on the relative mg quantities of cytochrome c and carotenes in the cells. Strains with carotene/cytochromec ratios of0–1 × 10^-1,3–15× 10^-1 and l6 × 10^-1 and above had type II, type III and type I survival curves, respectively.     

Minimax risk overl p -balls forl p -error

Summary Consider estimating the mean vector from dataN _n (, ² I) withl _q norm loss,q1, when is known to lie in ann-dimensionall _p ball,p(0, ). For largen, the ratio of minimaxlinear risk to minimax risk can bearbitrarily large ifp. Obvious exceptions aside, the limiting ratio equals 1 only ifp=q=2. Our arguments are mostly indirect, involving a reduction to a univariate Bayes minimax problem. Whenp, simple non-linear co-ordinatewise threshold rules are asymptotically minimax at small signal-to-noise ratios, and within a bounded factor of asymptotic minimaxity in general. We also give asymptotic evaluations of the minimax linear risk. Our results are basic to a theory of estimation in Besov spaces using wavelet bases (to appear elsewhere).