The Role of Intramolecular Hydrogen Bonds vs. Other Weak Interactions on the Conformation of Hyponitrous Acid and Its Mono- and Dithio-Derivatives

High level ab initio and density functional theory calculations have been carried out to investigate the relative stability of the different conformers of hyponitrous acid and its mono- and dithio-derivatives. Geometries and vibrational frequencies were obtained at the B3LYP/6-311+G(d,p) level and final energies through B3LYP/6-311++G(3df,2pd) single point calculations. The reliability of this theoretical scheme has been assessed by comparing these DFT results with those obtained at the G3 level of theory, for some suitable cases. The cis conformers of hyponitrous acid and its mono- and dithio-derivatives are systematically more stable than the trans ones because in the cis conformation a dative interaction between the nitrogen-lone pairs and the σ_NX^* antibonding orbital is significantly favored. Quite interestingly, in general, the conformers presenting an intramolecular hydrogen bond (IHB) are not the global minima of the corresponding potential energy surfaces and only for hyponitrous acid the conformer with a OH ⋅s O IHB is slightly more stable than the cis conformer without IHB. The low stability of the tautomers with IHB is closely related with another weak intramolecular interaction which involves the lone-pairs of the chalcogen atoms and the π_NN^* antibondig orbital, and which is significantly perturbed when the IHB is formed.     

Effects of different alkali metal ions on the cationization of poly(ethylene glycol)s in matrix-assisted laser desorption/ionization mass spectrometry: a new selectivity parameter

The cationization of poly(ethylene glycol)s, PEG 4000 and PEG 6000, under matrix-assisted laser desorption/ionization conditions was studied by using different concentration ratios of the sodium ion, as the reference ion, and another alkali metal ion (Li(+), K(+), Rb(+), Cs(+)). A linear correlation was found between the intensity ratio of the sodiated PEGs and PEGs cationized with alkali metal ions versus the initial concentration ratio of sodium and alkali metal ions. The slopes of these straight lines are proposed as a novel selectivity ratio for the ionization process. The intensity distribution of the cationized PEGs was also investigated. It was found that the cationized oligomers follow Poisson statistics. The M(n) and M(w) values were also evaluated. An explanation for the observed effects is given.     

Investigation of Tropane Alkaloids in Genetically Transformed <Emphasis Type="Italic">Atropa belladonna</Emphasis> L. Cultures

The purpose of the present study was to determine the tropane alkaloid content of genetically transformed hairy root cultures of Atropa belladonna L. Determination of alkaloids was performed by HPLC method. Samples were extracted with chloroform – methanol - cc. ammonia 15:5:1 (v/v/v). Crude extracts were purified on Extrelut columns. HPLC separation was performed on Luna C8 reversed phase column. An isocratic mixture of acetonitrile – 30 mM phosphate buffer - methanol 12.2:79.7:8.1(v/v/v) was used as eluent. Peaks were identified by addition of standards and diode-array detection. Hyoscyamine, scopolamine and apoatropine were determined by external standard method at 210 nm. We measured the alkaloid content of genetically transformed in vitro cultures (hairy roots and reorganised plants) cultivated on Gamborg B5 basic media. The highest hyoscyamine and scopolamine content was found in hairy root clone #K₅ (0,223 m/m%) and in hairy root clone #K₄ (0,018 m/m%) respectively. Alkaloid contents were higher in the hairy roots than in the reorganised plants.     

Comparative receptor mapping of serotoninergic 5-HT3 and 5-HT4 binding sites*

The clinical use of currently available drugs acting at the5-HT₄ receptor has been hampered by their lack of selectivityover 5-HT₃ binding sites. For this reason, there is considerableinterest in the medicinal chemistry of these serotonin receptor subtypes, andsignificant effort has been made towards the discovery of potent and selectiveligands. Computer-aided conformational analysis was used to characterizeserotoninergic 5-HT₃ and 5-HT₄ receptorrecognition. On the basis of the generally accepted model of the5-HT₃ antagonist pharmacophore, we have performed a receptormapping of this receptor binding site, following the active analog approach(AAA) defined by Marshall. The receptor excluded volume was calculated as theunion of the van der Waals density maps of nine active ligands(pK_i 8.9), superimposed in pharmacophoric conformations.Six inactive analogs (pK_i < 7.0) were subsequently used todefine the essential volume, which in its turn can be used to define theregions of steric intolerance of the 5-HT₃ receptor. Five activeligands (pK_i 9.3) at 5-HT₄ receptors wereused to construct an antagonist pharmacophore for this receptor, and todetermine its excluded volume by superimposition of pharmacophoricconformations. The volume defined by the superimposition of five inactive5-HT₄ receptor analogs that possess the pharmacophoric elements(pK_i 6.6) did not exceed the excluded volume calculated forthis receptor. In this case, the inactivity may be due to the lack of positiveinteraction of the amino moiety with a hypothetical hydrophobic pocket, whichwould interact with the voluminous substituents of the basic nitrogen ofactive ligands. The difference between the excluded volumes of both receptorshas confirmed that the main difference is indeed in the basic moiety. Thus,the 5-HT₃ receptor can only accommodate small substituents inthe position of the nitrogen atom, whereas the 5-HT₄ receptorrequires more voluminous groups. Also, the basic nitrogen is located at ca.8.0 Å from the aromatic moiety in the 5-HT₄ antagonistpharmacophore, whereas this distance is ca. 7.5 Å in the5-HT₃ antagonist model. The comparative mapping of bothserotoninergic receptors has allowed us to confirm the three-componentpharmacophore accepted for the 5-HT₃ receptor, as well as topropose a steric model for the 5-HT₄ receptor binding site. Thisstudy offers structural insights to aid the design of new selective ligands,and the resulting models have received some support from the synthesis of twonew active and selective ligands: 24 (K_i(5-HT₃)= 3.7 nM; K_i(5-HT₄) > 1000 nM) and 25(K_i(5-HT₄) = 13.7 nM;K_i(5-HT₃) > 10 000 nM).     

Saturated heterocycles. Part 209. Synthesis of 1-cyclohexyl-substituted isoquinoline derivatives

In contrast with earlier literature data [7], both acrylic esters and acrylonitrile underwent Michael addition to l-methyl-3,4-dihydroisoquinolines 1-4 to yield the diesters 5-9 or the dinitrile 10 , respectively. Compounds 5-10 were converted by Claisen condensation to 1-[(3′-methoxycarbonyl- or 1-[(3′-ethoxycarbonyl-4′-oxo)-l'-cyclohexyl]-3,4-dihydroisoquinoline derivatives 11-16 . Several derivatives of 12 were prepared. The new compounds possess various pharmacological actions.     

Rate constant for the reaction of OH radicals with CH3C(O)Cl determined by direct kinetic method

Summary The fast flow technique with OH resonance fluorescence detection has been applied at T = 298 ± 2 K to study the kinetics of the overall reaction: H + CH₃C(O)Cl → products (1) A rate constant value of k₁ = (1.02 ± 0.12) x 10¹⁰ cm³ mol^-1 s^-1 has been determined which is the first direct kinetic parameter reported for reaction (1) in the literature (the error given refers to 2σ accuracy).     

Kinetic analysis of thermogravimetric data. XII

Shape and position parameters and are proposed for the characterization of TG curves and are defined by Eqs (6), (7) and (8), respectively. These parameters being reduced to the standard conditionsn=0 andq=1/6 K sec^–1, the nomogram given in Fig. 1 can be constructed by means fo Eqs (9), (11) and (12). An iteration method is proposed, allowing derivation of the kinetic parametersn, E andZ of simple thermal decomposition reactions, from the parameters n,E andZ, by using the empirica formulae (9), (10), (11) and (12) and the nomogram. Table 3 contains data necessary to construct this nomogram.

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Zusammenfassung Die Gestalts- und Positionsparameter , und werden zur Charakterisierung von TG-Kurven vorgeschlagen, bzw. durch die Gleichungen (6), (7) und (8) definiert. Durch Reduktion dieser Parameter auf die Standardbedingungenn=0 undq=1/6 K sec^–1 mit Hilfe der Gleichungen (9), (11) und (12) kann das Nomogramm in Abb. 1 konstruiert werden. Eine Iterationsmethode wird vorgeschlagen, welche die Ableitung der kinetischen Parameter,n, E undZ einfacher thermischer Zersetzungsreaktionen aus den Parametern and unter Anwendung der empirischen Formeln (9), (10), (11) und (12) sowie des Nomogramms ermöglicht. Tabelle 3 enthält die zur Konstruktion des Nomogramms nötigen Angaben.

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Résumé Pour caractériser les courbes TG, on propose les paramètres de forme et de position , et définis par les équations (6), (7) et (8). En réduisant ces paramètres aux conditions standardsn=0 etq=1/6 K sec^–1, à l'aide des équations (9), (11) et (12), le nomogramme donné dans la figure 1 peut être construit. On propose une méthode d'itération pour déduire les paramètres cinétiquesn, E etZ à partir des paramètres , et dans le cas des réactions simples de décomposition thermique, en utilisant les formules empiriques (9), (10), (11) et (12) ainsi que le nomogramme. Le tableau 3 contient les données nécessaires pour construire ce nomogramme.

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G , , (6), (7) (8). « » =0 q=1/6 ^–1 , . 1, (9), (11) (12). , , E Z , (9), (10), (11) (12) . 3 , .

     

Phosphinerhodium complexes as homogeneous catalysts : VIII. Enantioselective hydrogenation of ketones: evidence for several mechanisms with catalysts containing diop

Optical yields obtained in the hydrogenation of acetophenone with cationic and in situ rhodium complex catalysts depend on the P/Rh ratio and on the ionic or non-ionic character of the active species. The enantioselectivity of the in situ catalyst containing (+)-DIOP is reversed by addition of achiral tri-n-alkyl-phosphines. On the basis of these observations and the amount of H₂ consumed in preforming the catalysts, several different mechanisms are suggested: for example: cycles involving cationic rhodium complexes containing two (or three) phosphorus ligands and cycles involving non-ionic rhodium complexes with two phosphorus ligands in cis or trans positions. In the in situ catalyst with a Rh/(+)-DIOP/P-n-Bu₃  1/1/1 ratio (+)-DIOP functions as a monodentate ligand.     

Infrared study of adsorption of methanol,deuterated methanol and ethylene on the surface of ZSM-5 type zeolite

The surface species resulting in exposing of the ZSM-5 zeolite at elevated temperatures to methanol, deuterated methanol or ethylene have been studied by IR method.The three-step adsorption at 150°, 300°, 420° C or one-step adsorption at 420° C have been carried out in order to prepare the samples for IR. In all cases the most prominent band appeared in the range 1495–1515 cm^?1; besides two bands at about 1470 and 1370 cm^?1 have been observed. On the basis of Greenler's results and of the shift values of the bands in our spectrum of adsorbed deuterated methanol it was supposed that the band 1495–1515 cm^?1 is due to the OCO group from the surface species. Moreover these species would involve both oxygen atoms from the surface of zeolite but not from OH groups of methanol.