Simultaneous acquisition of pulse EPR orientation selective spectra

High resolution pulse EPR methods are usually applied to resolve weak magnetic electron-nuclear or electron-electron interactions that are otherwise unresolved in the EPR spectrum. Complete information regarding different magnetic interactions, namely, principal components and orientation of principal axis system with respect to the molecular frame, can be derived from orientation selective pulsed EPR measurements that are performed at different magnetic field positions within the inhomogeneously broadened EPR spectrum. These experiments are usually carried out consecutively, namely a particular field position is chosen, data are accumulated until the signal to noise ratio is satisfactory, and then the next field position is chosen and data are accumulated. Here we present a new approach for data acquisition of pulsed EPR experiments referred to as parallel acquisition. It is applicable when the spectral width is much broader than the excitation bandwidth of the applied pulse sequence and it is particularly useful for orientation selective pulse EPR experiments. In this approach several pulse EPR measurements are performed within the waiting (repetition) time between consecutive pulse sequences during which spin lattice relaxation takes place. This is achieved by rapidly changing the main magnetic field, B(0), to different values within the EPR spectrum, performing the same experiment on the otherwise idle spins. This scheme represents an efficient utilization of the spectrometer and provides the same spectral information in a shorter time. This approach is demonstrated on W-band orientation selective electron-nuclear double resonance (ENDOR), electron spin echo envelope modulation (ESEEM), electron-electron double resonance (ELDOR)--detected NMR and double electron-electron resonance (DEER) measurements on frozen solutions of nitroxides. We show that a factors of 3-6 reduction in total acquisition time can be obtained, depending on the experiment applied.     

Geneticallly enginereed trehalose accumulation improves cryopreservation tolerance of chrysanthemum (Dendranthema grandiflorum kitam.) shoot-tips

Shoot-tips isolated from two transgenic lines of chrysanthemum (Dendranthema grandiflorum Kitam.) var. Indianapolis in vitro plantlets with induced capacity to biosynthesize trehalose, and from a non-transformed line, were subjected to cryopreservation using a vitrification procedure. After dissection, apices were precultured on semi-solid MS medium with 0.3 M sucrose for 4 days, loaded in a 0.4 M sucrose + 2 M glycerol solution for 20-30 min and exposed to PVS2 or PVS3 vitrification solutions for 0, 20, 40 or 60 min at room temperature prior to rapid immersion in liquid nitrogen. The highest shoot regeneration after cryopreservation was obtained with exposure to either PVS solution for 40 min. Plant regeneration from cryopreserved shoot-tips ranged between 48 percent and 67 percent for transgenic lines and between 33 percent and 36 percent for non-transgenic lines. No polymorphic loci were detected in plantlets regenerated from cryopreserved and non-cryopreserved shoot-tips with RAPD techniques using eight primers that amplified 101 monomorphic loci.     

Molecular recognition of nucleobases and amino acids by sulphonato-calixnaphthalene-capped silver nanoparticles

The plasmon resonances of sulphonato-calixnaphthalene-capped silver nanoparticles have been used to study the complexation of the nanoparticles with nucleobases and amino acids. Only in the case of the nanoparticles capped with oxacalix[4]naphthalenesultone, does complexation of both nucleobases and certain amino acids occur. The complexation of the aromatic amino acids, phenylalanine and tryptophan, has previously not been observed for calixarene-capped silver nanoparticles.     

Cell‐Permeant and Photocleavable Chemical Inducer of Dimerization

Chemical inducers of dimerization (CIDs) have been developed to orchestrate protein dimerization and translocation. Here we present a novel photocleavable HaloTag‐ and SNAP‐tag‐reactive CID (MeNV‐HaXS) with excellent selectivity and intracellular reactivity. Excitation at 360 nm cleaves the methyl‐6‐nitroveratryl core of MeNV‐HaXS. MeNV‐HaXS covalently links HaloTag‐ and SNAP‐tag fusion proteins, and enables targeting of selected membranes and intracellular organelles. MeNV‐HaXS‐mediated translocation has been validated for plasma membrane, late endosomes, lysosomes, Golgi, mitochondria, and the actin cytoskeleton. Photocleavage of MeNV‐HaXS liberates target proteins and provides access to optical manipulation of protein relocation with high spatiotemporal and subcellular precision. MeNV‐HaXS supports kinetic studies of protein dynamics and the manipulation of subcellular enzyme activities, which is exemplified for Golgi‐targeted cargo and the assessment of nuclear import kinetics.     

Stereochemistry and Conformation of Skyllamycin,a Non‐Ribosomally Synthesized Peptide from Streptomyces sp. Acta 2897

Skyllamycin is a non‐ribosomally synthesized cyclic depsipeptide from Streptomyces sp. Acta 2897 that inhibits PDGF‐signaling. The peptide scaffold contains an N‐terminal cinnamoyl moiety, a β‐methylation of aspartic acid, three β‐hydroxylated amino acids and one rarely occurring α‐hydroxy glycine. With the exception of α‐hydroxy glycine, the stereochemistry of the amino acids was assigned by comparison to synthetic reference amino acids applying chiral GC‐MS and Marfey‐HPLC analysis. The stereochemistry of α‐hydroxy glycine, which is unstable under basic and acidic conditions, was determined by conformational analysis, employing a combination of data from NOESY‐NMR spectroscopy, simulated annealing and free MD simulations. The simulation procedures were applied for both R‐ and S‐configured α‐hydroxy glycine of the skyllamycin structure and compared to the NOESY data. Both methods, simulated annealing and free MD simulations independently support S‐configured α‐hydroxy glycine thus enabling the assignment of all stereocenters in the structure of skyllamycin and devising the role of two‐component flavin dependent monooxygenase (Sky39) as S‐selective.     

Numerical Methods for the Pricing of Swing Options: A Stochastic Control Approach

In the natural gas market, many derivative contracts have a large degree of flexibility. These are known as Swing or Take-Or-Pay options. They allow their owner to purchase gas daily, at a fixed price and according to a volume of their choice. Daily, monthly and/or annual constraints on the purchased volume are usually incorporated. Thus, the valuation of such contracts is related to a stochastic control problem, which we solve in this paper using new numerical methods. Firstly, we extend the Longstaff–Schwarz methodology (originally used for Bermuda options) to our case. Secondly, we propose two efficient parameterizations of the gas consumption, one is based on neural networks and the other on finite elements. It allows us to derive a local optimal consumption law using a stochastic gradient ascent. Numerical experiments illustrate the efficiency of these approaches. Furthermore, we show that the optimal purchase is of bang-bang type.      

Statistical physics of inference: thresholds and algorithms

Many questions of fundamental interest in today's science can be formulated as inference problems: some partial, or noisy, observations are performed over a set of variables and the goal is to recover, or infer, the values of the variables based on the indirect information contained in the measurements. For such problems, the central scientific questions are: Under what conditions is the information contained in the measurements sufficient for a satisfactory inference to be possible? What are the most efficient algorithms for this task? A growing body of work has shown that often we can understand and locate these fundamental barriers by thinking of them as phase transitions in the sense of statistical physics. Moreover, it turned out that we can use the gained physical insight to develop new promising algorithms. The connection between inference and statistical physics is currently witnessing an impressive renaissance and we review here the current state-of-the-art, with a pedagogical focus on the Ising model which, formulated as an inference problem, we call the planted spin glass. In terms of applications we review two classes of problems: (i) inference of clusters on graphs and networks, with community detection as a special case and (ii) estimating a signal from its noisy linear measurements, with compressed sensing as a case of sparse estimation. Our goal is to provide a pedagogical review for researchers in physics and other fields interested in this fascinating topic.     

Ab initio study of the mechanism for photoinduced Yl-oxygen exchange in uranyl(VI) in acidic aqueous solution

The mechanism for the photochemically induced isotope-exchange reaction U(17/18)O2(2+)(aq) + H2(16)O <==> U(16)O2(2+)(aq) + H2(17/18)O has been studied using quantum-chemical methods. There is a dense manifold of states between 22,000 and 54,000 cm(-1) that results from excitations from the sigma(u) and pi(u) bonding orbitals in the (1)Sigma(g)(+) ground state to the nonbonding f(delta) and f(phi) orbitals localized on uranium. On the basis of investigations of the reaction profile in the (1)Sigma(g)(+) ground state and the excited states (3)Delta(g) (the lowest triplet state) and (3)Gamma(g) (one of the several higher triplet states), the latter two of which have the electron configurations sigma(u)f(delta) and pi(u)f(phi), respectively, we suggest that the isotope exchange takes place in one of the higher triplet states, of which the (3)Gamma(g) state was used as a representative. The geometries of the luminescent (3)Delta(g) state, the lowest in the sigma(u)f(delta,phi) manifold (the "sigma" states), and the (1)Sigma(g)(+) ground state are very similar, except that the bond distances are slightly longer in the former. This is presumably a result of transfer of a bonding electron to a nonbonding f orbital, which makes the excited state in some respects similar to uranyl(V). As is the case for all of the states of the pi(u)f(delta,phi) manifold (the "pi" states), the geometry of the (3)Gamma(g) state is very different from that of the (3)Delta(g) "sigma" state and has nonequivalent U-O(yl) distances of 1.982 and 1.763 A; in the (3)Gamma(g) state, the yl-exchange takes place by transfer of a proton or hydrogen from water to the more distant yl-oxygen. The activation barriers for proton/hydrogen transfer in the ground state and the (3)Delta(g) and (3)Gamma(g) states are 186, 219, and 84 kJ/mol, respectively. The relaxation energy for the (3)Gamma(g) state in the solvent after photoexcitation is -86 kJ/mol, indicating that the energy barrier can be overcome; the "pi" states are therefore the most probable route for proton/hydrogen transfer. They can be populated after UV irradiation but are too high in energy (approximately 36,000-40,000 cm(-1)) to be reached by a single-photon absorption at 436 nm (22,900 cm(-1)), where experimental data have demonstrated that exchange can take place. Okuyama et al. [Bull. Res. Lab. Nucl. React. (Tokyo Inst. Technol.) 1978, 3, 39-50] have demonstrated that an intermediate is formed when an acidic solution of UO2(2+)(aq) is flash-photolyzed in the UV range. The absorption spectrum of this short-lived intermediate (which has a maximum at 560 nm) indicates that this species arises from 436 nm excitation of the luminescent (3)Delta(g) state (which has a lifetime of approximately 2 x 10(-6) s); this is sufficient to reach the reactive "pi" states. It has been speculated that the primary reaction in acidic solutions of UO2(2+)(aq) is the formation of a uranyl(V) species; our results indicate that the structure in the luminescent state has some similarity to that of UO2(+) but that the reactive species in the "pi" states is a cation radical with a distinctly different structure.     

Aggregation and self-assembly of amphiphilic block copolymers in aqueous dispersions of carbon nanotubes

The self-assembly (SA) of amphiphilic block copolymers (poly(ethylene oxide)-poly(propylene oxide)-poly(ethylene oxide)) was investigated in dispersions of single-walled and multiwalled carbon nanotubes (SWNT and MWNT, respectively) as a function of temperature. Differential scanning calorimetry (DSC) was used for characterization of the thermal behavior of the combined polymers-nanostructures system, and spin-probe electron paramagnetic resonance (EPR) was employed for probing the local dynamic and polarity of the polymer chains in the presence of nanostructures. It was found that SWNT and MWNT modify the temperature, enthalpy, and dynamic behavior of polymer SA. In particular, SWNT were found to increase the cooperativity of aggregating chains and dominate aggregate dynamics. MWNT reduced the cooperativity, while colloidal carbon black additives, studied for comparison, did not show similar effects. The experimental observations are consistent with the suggestion that dimensional matching between the characteristic radius of the solvated polymer chains and the dimensions of additives dominate polymer SA in the hybrid system.