Crystallization of Random Trigonometric Polynomials

We give a precise measure of the rate at which repeated differentiation of a random trigonometric polynomial causes the roots of the function to approach equal spacing. This can be viewed as a toy model of crystallization in one dimension. In particular we determine the asymptotics of the distribution of the roots around the crystalline configuration and find that the distribution is not Gaussian.     

Deuterium exchange studies in the identification of alkylated DNA bases found in urine, by tandem mass spectrometry

Humans are exposed to a large number of carcinogens which may react at various sites throughout the body, including the N-7-, N2-, and O6-positions of guanine. The effects of this are various but may result in depurination and eventual excretion of the modified base in the urine. Various alkylguanine derivatives with substituents at the N-7-, N2- and O6-positions were synthesized and daughter-ion spectra obtained. Apart from the methyl and dialkylguanines all other spectra exhibited an ion at m/z 151 using electron ionization (EI) and m/z 152 using fast-atom bombardment (FAB). The daughter-ion spectra of dialkylguanines contained an ion at m/z 150 (EI). Hence, scans of m/z 150 and 151 using EI, to detect all parent-ions from which they are formed (parent-ion scans) should indicate the presence of alkyl and dialkylguanine bases in a complex biological matrix such as human urine. Parent-ion scans of m/z 150 and 151 (EI) of a partially purified human urine sample exhibited numerous ions, including a prominent ion at m/z 179. A daughter-ion spectrum of m/z 179 revealed fragment ions that suggested the presence of N2-dimethylguanine and an ethylated guanine. Any confusion due to the presence of daughter ions from different alkylguanines in the same spectrum can be resolved by the fact that an ethylated guanine has four exchangeable protons, whereas N2-dimethylguanine has only three. By performing hydrogen/deuterium exchange it is possible to distinguish the N2-dimethylguanine from ethylated guanine isomers.(ABSTRACT TRUNCATED AT 250 WORDS)     

Identification of phosphoramide mustard/DNA adducts using tandem mass spectrometry

The reaction pathway of alkylating agents is often exploited in the design of bifunctional anti-cancer drugs. These drugs form mono-DNA adducts as well as inter- and intra-strand cross-linked adducts, notably by reaction at DNA bases, including the N-7-position of guanine (G). A positive-ion fast-atom bombardment (FAB) mass spectrum of an in vitro preparation of DNA alkylated with phosphoramide mustard (the active metabolite of the anti-cancer drug cyclophosphamide) indicated the presence of the two mono-DNA adducts N-(2-chloroethyl)-N-[2-(7-guaninyl)ethyl] amine, designated NOR-G, and N-(2-hydroxyethyl)-N-[2-(7-guaninyl)ethyl] amine, designated NOR-G-OH, (MH+ 257/259 and 239, respectively) but not the presence of the cross-linked adduct N,N-bis-[2-(7-guaninyl)ethyl] amine, designated G-NOR-G (MH+ 372). Using synthetic standards, daughter-ion spectra of NOR-G, NOR-G-OH and G-NOR-G were obtained (matrix 0.2 M p-toluene sulphonic acid in glycerol) by positive-ion FAB tandem mass spectrometry (FAB-MS/MS). The daughter-ion spectra of both mono-DNA adducts NOR-G and NOR-G-OH contained a fragment ion at m/z 152 [G + H]+, whereas the cross-linked adduct, G-NOR-G, showed an ion at m/z 221, [MH-G]+. Evidence for the presence of NOR-G, NOR-G-OH and G-NOR-G in the in vitro preparation was obtained by performing a double parent-ion scan on m/z 152 and 221. The presence of G-NOR-G was further supported by performing a single parent-ion scan on m/z 221.(ABSTRACT TRUNCATED AT 250 WORDS)     

Influence of polymer matrix composition and architecture on polymer nanocomposite formation: Coarse-grained molecular dynamics simulation

Coarse-grained molecular dynamics simulations of stacks of two-dimensional platelets immersed in a polymer melt were performed to investigate aspects of the polymer matrix that promote the formation of intercalated or exfoliated nanocomposite structures. Such factors include temperature, copolymer architecture, and blend composition. Increasing the polymer-sheet attractive interaction led to binding of the sheets, where individual beads simultaneously attract two neighboring sheets, thus kinetically blocking intercalation by occupying the perimeter of the affected gallery. Polymers with a small polymer-sheet attraction, but having a strongly attractive chain end (end-functionalized polymers) minimized the bonding of adjacent sheets. These systems exhibited some sheet sliding because a majority of the confined polymer beads only interacted weakly with adjacent sheets; however, the number density of intercalated polymer was low. Mixtures of end-functionalized and nonfunctionalized polymers, however, yielded better intercalation efficiency. For the mixed system, the reduced number of highly attractive beads provided sufficient interaction for intercalation to occur, enabling greater intercalation rates, less sheet-bridging, and incorporation of the nonfunctionalized polymers into the galleries. © 2003 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 41: 3272–3284, 2003     

Analysis of IAEA environmental samples for plutonium and uranium by ICP/MS in support of international safeguards

A method for the separation and determination of total and isotopic uranium and plutonium by ICP/MS was developed for IAEA samples on cellulose-based media. Preparation of the IAEA samples involved a series of redox chemistries and separations using TRU® resin (Eichrom). The sample introduction system, an APEX nebulizer (Elemental Scientific, Inc.), provided enhanced nebulization for a several-fold increase in sensitivity and reduction in background. Application of mass bias (ALPHA) correction factors greatly improved the precision of the data. By combining the enhancements of chemical separation, instrumentation and data processing, detection levels for uranium and plutonium approached high attogram levels.     

Melanosomal damage in normal human melanocytes induced by UVB and metal uptake--a basis for the pro-oxidant state of melanoma

Melanins are ubiquitous catecholic pigments, formed in organelles called melanosomes within melanocytes, the function of which is to protect skin against harmful effects of UV radiation. Melanosomes within melanoma cells are characteristically abnormal, with fragmented melanin and disrupted membranes. We hypothesize that the disruption of melanosomal melanin might be an early event in the etiology and progression of melanoma, leading to increased oxidative stress and mutation. In this report, we examine the effect of a combination of UV treatment and metal ion exposure on melanosomes within melanocytes, as well as their ability to act as pro-oxidants in ex situ experiments, and assay the effects of this treatment on viability and cell cycle progression. UVB exposure causes morphologic changes of the cells and bleaching of melanosomes in normal melanocytes, both significantly enhanced in Cu(II) and Cd(II)-treated cells, as observed by microscopy. The promoted bleaching by Cu(II) is due to its ability to redox cycle under oxidative conditions, generating reactive oxygen species; verified by the observed enhancement of hydroxyl radical generation when isolated melanosomes were treated with both Cu(II) ions and UVB, as assayed by DNA clipping. Single-dose UVB/Cu treatment does not greatly affect cell viability or cell cycle progression in heavily pigmented cells, but did so in an amelanotic early stage melanoma cell line.     

Simultaneous detection of five different 2-hydroxyethyl-DNA adducts formed by ethylene oxide exposure, using a high-performance liquid chromatography/electrospray ionisation tandem mass spectrometry assay

A method has been developed for the simultaneous detection and quantitation of five different 2-hydroxyethyl-DNA (HE-DNA) adducts that could be formed as a result of exposure to ethylene oxide (EO). In addition to the major N7-HE-guanine (N7-HEG) adducts this assay can also measure the less prevalent but potentially more biologically significant N1-HE-2'-deoxyadenosine (N1-HEdA), O(6)-HE-2'-deoxyguanosine (O(6)-HEdG), N(6)-HE-2'-deoxyadenosine (N(6)-HEdA) and N3-HE-2'-deoxyuridine adducts (N3-HEdU). The method involves the isolation of HE adducts from the unmodified nucleosides by either neutral thermal hydrolysis or enzymatic digestion, followed by high-performance liquid chromatographic (HPLC) purification, before detection and quantification by liquid chromatography tandem mass spectrometry (LC/MS/MS) using selective reaction monitoring (SRM). The limits of detection were in the range 0.5-25 fmol for each individual adduct, making this one of the most sensitive assays available for the detection of N7-HEG. To illustrate the possible applications of the assay, it has been employed in the measurement of endogenous/background and EO-induced HE adducts in a variety of DNA samples.     

<Superscript>239, 240, 241</Superscript>Pu fingerprinting of plutonium in western US soils using ICPMS: solution and laser ablation measurements

Sector field inductively coupled plasma mass spectrometry (SF-ICPMS) has been used with analysis of solution samples and laser ablation (LA) of electrodeposited alpha sources to characterize plutonium activities and atom ratios prevalent in the western USA. A large set of surface soils and attic dusts were previously collected from many locations in the states of Nevada, Utah, Arizona, and Colorado; specific samples were analyzed herein to characterize the relative contributions of stratospheric fallout vs. Nevada Test Site (NTS) plutonium. This study illustrates two different ICPMS-based analytical strategies that are successful in fingerprinting Pu in environmental soils and dusts. Two specific datasets have been generated: (1) soils are leached with HNO₃-HCl, converted into electrodeposited alpha sources, counted by alpha spectrometry, then re-analyzed using laser ablation SF-ICPMS; (2) samples are completely dissolved by treatment with HNO₃-HF-H₃BO₃, Pu fractions are prepared by extraction chromatography, and analyzed by SF-ICPMS. Optimal laser ablation and ICPMS conditions were determined for the re-analysis of archived alpha spectrometry “planchette” sources. The best ablation results were obtained using a large spot size (200 μm), a defocused beam, full repetition rate (20 Hz) and scan rate (200 μm s⁻¹); LA-ICPMS data were collected with a rapid electrostatic sector scanning experiment. Less than 10% of the electroplated surface area is consumed in the LA-ICPMS analysis, which would allow for multiple re-analyses. Excellent agreement was found between ^239+240Pu activities determined by LA-ICPMS vs. activity results obtained by alpha spectrometry for the same samples ten years earlier. LA-ICPMS atom ratios for ²⁴⁰Pu/²³⁹Pu and ²⁴¹Pu/²³⁹Pu range from 0.038–0.132 and 0.00034–0.00168, respectively, and plot along a two-component mixing line (²⁴¹Pu/²³⁹Pu = 0.013 [²⁴⁰Pu/²³⁹Pu] – 0.0001; r ² = 0.971) with NTS and global fallout end-members. A rapid total dissolution procedure, followed by extraction chromatography and SF-ICPMS solution Pu analysis, generates excellent agreement with certified ^239+240Pu activities for standard reference materials NIST 4350b, NIST 4353, NIST 4357, and IAEA 385. ^239+240Pu activities and atom ratios determined by total dissolution reveal isotopic information in agreement with the LA-ICPMS dataset regarding the ubiquitous mixing of NTS and stratospheric fallout Pu sources in the regional environment. For several specific samples, the total dissolution method reveals that Pu is incompletely recovered by simpler HNO₃-HCl leaching procedures, since some of the Pu originating from the NTS is contained in refractory siliceous particles.