Computational study on the existence of organic peroxy radical-water complexes (RO2.H2O)

The existence of a series of organic peroxy radical-water complexes [CH3O2.H2O (methyl peroxy); CH3CH2O2.H2O (ethyl peroxy); CH3C(O)O2.H2O (acetyl peroxy); CH3C(O)CH2O2.H2O (acetonyl peroxy); CH2(OH)O2.H2O (hydroxyl methyl peroxy); CH2(OH)CH2O2.H2O (2-hydroxy ethyl peroxy); CH2(F)O2.H2O (fluoro methyl peroxy); CH2(F)CH2O2.H2O (2-fluoro ethyl peroxy)] is evaluated using high level ab initio calculations. A wide range of binding energies is predicted for these complexes, in which the difference in binding energies can be explained by examination of the composition of the R group attached to the peroxy moiety. The general trend in binding energies has been determined to be as follows: fluorine approximately alkyl < carbonyl < alcohol. The weakest bound complex, CH3O2.H2O, is calculated to be bound by 2.3 kcal mol-1, and the strongest, the CH2(OH)O2.H2O complex, is bound by 5.1 kcal mol-1. The binding energy of the peroxy radical-water complexes which contain carbonyl and alcohol groups indicates that these complexes may perturb the kinetics and product branching ratios of reactions involving these complexes.     

Resonance description of S-nitrosothiols: insights into reactivity

A resonance representation of the electronic structure of S-nitrosothiols as a combination of the conventional R-S-N=O structure, a zwitterionic structure R-S+=N-O-, and a RS-/NO+ ion pair is proposed. The resonance forms are employed to predict and rationalize the structural and conformational properties of RSNOs, their interaction with Lewis acids, and their overall chemical reactivity.     

Denaturation of hen egg white lysozyme in electromagnetic fields: a molecular dynamics study

Nonequilibrium molecular dynamics simulations of hen egg white lysozyme have been performed in the canonical ensemble at 298 K in the presence of external electromagnetic fields of varying intensity in the microwave to far-infrared frequency range. Significant nonthermal field effects were noted, such as marked changes in the protein's secondary structure which led to accelerated incipient local denaturation relative to zero-field conditions. This occurred primarily as a consequence of alignment of the protein's total dipole moment with the external field, although the enhanced molecular mobility and dipolar alignment of water molecules is influential on sidechain motion in solvent-exposed regions. The applied field intensity was found to be highly influential on the extent of denaturation in the frequency range studied, and 0.25-0.5 V Arms-1 fields were found to induce initial denaturation to a comparable extent to thermal denaturation in the 400 to 500 K range. In subsequent zero-field simulations following exposure to the e/m field, the extent of perturbation from the native fold and the degree of residual dipolar alignment were found to be influential on incipient folding.     

Surfactant vesicles for high-efficiency capture and separation of charged organic solutes

We demonstrate the unique ability of catanionic vesicles, formed by mixing single-tailed cationic and anionic surfactants, to capture ionic solutes with remarkable efficiency. In an initial study (Wang, X.; Danoff, E. J.; Sinkov, N. A.; Lee, J.-H.; Raghavan, S. R.; English, D. S. Langmuir 2006, 22, 6461) with vesicles formed from cetyl trimethylammonium tosylate (CTAT) and sodium dodecylbenzenesulfonate (SDBS), we showed that CTAT-rich (cationic) vesicles could capture the anionic solute carboxyfluorescein with high efficiency (22%) and that the solute was retained by the vesicles for very long times (t1/2 = 84 days). Here we expand on these findings by investigating the interactions of both anionic and cationic solutes, including the chemotherapeutic agent doxorubicin, with both CTAT-rich and SDBS-rich vesicles. The ability of these vesicles to capture and hold dyes is extremely efficient (>20%) when the excess charge of the vesicle bilayer is opposite that of the solute (i.e., for anionic solutes in CTAT-rich vesicles and for cationic solutes in SDBS-rich vesicles). This charge-dependent effect is strong enough to enable the use of vesicles to selectively capture and separate an oppositely charged solute from a mixture of solutes. Our results suggest that catanionic surfactant vesicles could be useful for a variety of separation and drug delivery applications because of their unique properties and long-term stability.     

Multiple ionization of argon in coincidence with projectile ions in 60–120 MeV Si q+-Ar collisions

A projectile ion-recoil ion coincidence technique has been employed to study the multiple ionization and the charge transfer processes in collisions of 60–120 MeV Si ^q+ (q = 4−14) ions with neutral argon atoms. The relative contribution of different ionization channels, namely; direct ionization, electron capture and electron loss leading to the production of slow moving multiply charged argon recoil ions have been investigated. The data reported on the present collision system result from a direct measurement in the considered impact energy for the first time. The total ionization cross-sections for the recoil ions are shown to scale as q ^1.7/E _p ^0.5 , where E _p is the energy in MeV of the projectile and q its charge state. The recoil fractions for the cases of total- and direct ionizations are found to decrease with increasing recoil charge state j. The total ionization fractions of the recoils are seen to depend on q and to show the presence of a ‘shell-effect’ of the target. Further, the fractions are found to vary as 1/j ² upto j = 8+. The average recoil charge state 〈j〉 increases slowly with q and with the number of lost or captured electrons from or into the projectile respectively. The projectile charge changing cross-sections σ _qq′ are found to decrease with increasing q for loss ionization and to increase with q for direct-and capture ionization processes respectively. The physics behind various scaling rules that are found to follow our data for different ionization processes is reviewed and discussed.     

Transfer measurements for the Ti+Ni systems at near barrier energies

Large enhancements have been observed in the sub-barrier fusion cross sections for Ti+Ni systems in our previous studies. Coupled channel calculations incorporating couplings to 2⁺ and 3⁻ states failed to explain these enhancements completely. A possibilty of transfer channels contributing to the residual enhancements had been suggested. In order to investigate the role of relevant transfer channels, measurements of one- and two-nucleon transfer were carried out for ^46,48Ti+⁶¹Ni systems. The present paper gives the results of these studies.     

In Situ Synchrotron X-ray Diffraction Studies of Hydrogen-Desorption Properties of 2LiBH4–Mg2FeH6 Composite

Adding a secondary complex metal hydride can either kinetically or thermodynamically facilitate dehydrogenation reactions. Adding Mg₂FeH₆ to LiBH₄ is energetically favoured, since FeB and MgB₂ are formed as stable intermediate compounds during dehydrogenation reactions. Such “hydride destabilisation” enhances H₂-release thermodynamics from H₂-storage materials. Samples of the LiBH₄ and Mg₂FeH₆ with a 2:1 molar ratio were mixed and decomposed under three different conditions (dynamic decomposition under vacuum, dynamic decomposition under a hydrogen atmosphere, and isothermal decomposition). In situ synchrotron X-ray diffraction results revealed the influence of decomposition conditions on the selected reaction path. Dynamic decomposition of Mg₂FeH₆–LiBH₄ under vacuum, or isothermal decomposition at low temperatures, was found to induce pure decomposition of LiBH₄, whilst mixed decomposition of LiBH₄ + Mg and formation of MgB₂ were achieved via high-temperature isothermal dehydrogenation.     

Mechanism of atmospheric CO2 fixation in the cavities of a dinuclear cryptate

Using density functional theory (DFT) methods, we have investigated two possible mechanisms for atmospheric CO(2) fixation in the cavity of the dinuclear zinc(II) octa-azacryptate, and the subsequent reaction with methanol whereby this latter reaction transforms the (essentially) chemically inert CO(2) into useful products. The first mechanism (I) was proposed by Chen et al. [Chem.-Asian J. 2007, 2, 710], and involves the attachment of one CO(2) molecule onto the hydroxyl-cryptate form, resulting in the formation of a bicarbonate-cryptate species and subsequent reaction with one methanol molecule. In addition, we suggest another mechanism that is initiated via the attachment of a methanol molecule onto one of the Zn-centers, yielding a methoxy-cryptate species. The product is used to activate a CO(2) molecule and generate a methoxycarbonate-cryptate. The energy profiles of both mechanisms were determined, and we conclude that, while both mechanisms are energetically feasible, free energy profiles suggest that the scheme proposed by Chen et al. is most likely.     

Effects of external electromagnetic fields on the conformational sampling of a short alanine peptide

Non‐equilibrium molecular dynamics simulations of a solvated 21‐residue polyalanine (A21) peptide, featuring a high propensity for helix formation, have been performed at 300 K and 1 bar in the presence of external electromagnetic (e/m) fields in the microwave region (2.45 GHz) and an r.m.s. electric field intensity range of 0.01–0.05 V/Å. To investigate how the field presence affects transitions between the conformational states of a protein, we report 16 independent 40 ns‐trajectories of A21 starting from both extended and fully folded states. We observe folding‐behavior of the peptide consistent with prior simulation and experimental studies. The peptide displays a natural tendency to form stable elements of secondary structure which are stabilized by tertiary interactions with proximate regions of the peptide. Consistent with our earlier work, the presence of external e/m fields disrupts this behavior, involving a mechanism of localized dipolar alignment which serves to enhance intra‐protein perturbations in hydrogen bonds (English, et al., J. Chem. Phys. 2010 , 133, 091105), leading to more frequent transitions between shorter‐lifetime states. © 2012 Wiley Periodicals, Inc.     

Remotely-doped graded potential well structures

We present a new method to obtain high-mobility three-dimensional electron gas systems. We have achieved control of carrier density and of carrier profile by growth of the first remotely-doped parabolic potential well structures. Computer-controlled molecular beam epitaxy is used to grow a layer of ultra-fine superlattices with a programmable composition gradient. This produces conduction-band potentials which, in the absence of doping, are equivalent to the potential profiles of fixed charge distributions. When conduction electrons are introduced into these graded wells through remote doping of the barrier regions, they distribute themselves in such a way as to produce a uniform chemical potential at thermal equilibrium. We illustrate through computer simulations employing Fermi statistics that electrons introduced into a wide parabolic potential well distribute themselves uniformly. More significantly, the carrier distribution in the well is remarkably insensitive to the dopant sheet charge in the barrier, the more so at lower temperatures. We have fabricated remotely-doped graded potential well structures of the proposed type by molecular beam epitaxy. These structures exhibit the above effects. Measured mobilities of such three-dimensional electron gases grown using the GaAs/Al_xGa_1−xAs system are higher than those of bulk-doped GaAs doped to give the same uniform electron concentration.