The role of large-scale motions in catalysis by dihydrofolate reductase

Dihydrofolate reductase has long been used as a model system to study the coupling of protein motions to enzymatic hydride transfer. By studying environmental effects on hydride transfer in dihydrofolate reductase (DHFR) from the cold-adapted bacterium Moritella profunda (MpDHFR) and comparing the flexibility of this enzyme to that of DHFR from Escherichia coli (EcDHFR), we demonstrate that factors that affect large-scale (i.e., long-range, but not necessarily large amplitude) protein motions have no effect on the kinetic isotope effect on hydride transfer or its temperature dependence, although the rates of the catalyzed reaction are affected. Hydrogen/deuterium exchange studies by NMR-spectroscopy show that MpDHFR is a more flexible enzyme than EcDHFR. NMR experiments with EcDHFR in the presence of cosolvents suggest differences in the conformational ensemble of the enzyme. The fact that enzymes from different environmental niches and with different flexibilities display the same behavior of the kinetic isotope effect on hydride transfer strongly suggests that, while protein motions are important to generate the reaction ready conformation, an optimal conformation with the correct electrostatics and geometry for the reaction to occur, they do not influence the nature of the chemical step itself; large-scale motions do not couple directly to hydride transfer proper in DHFR.     

The Lysozyme Inhibitor Thionine Acetate Is Also an Inhibitor of the Soluble Lytic Transglycosylase Slt35 from Escherichia coli

Lytic transglycosylases such as Slt35 from E. coli are enzymes involved in bacterial cell wall remodelling and recycling, which represent potential targets for novel antibacterial agents. Here, we investigated a series of known glycosidase inhibitors for their ability to inhibit Slt35. While glycosidase inhibitors such as 1-deoxynojirimycin, castanospermine, thiamet G and miglitol had no effect, the phenothiazinium dye thionine acetate was found to be a weak inhibitor. IC₅₀ values and binding constants for thionine acetate were similar for Slt35 and the hen egg white lysozyme. Molecular docking simulations suggest that thionine binds to the active site of both Slt35 and lysozyme, although it does not make direct interactions with the side-chain of the catalytic Asp and Glu residues as might be expected based on other inhibitors. Thionine acetate also increased the potency of the beta-lactam antibiotic ampicillin against a laboratory strain of E. coli.     

Equilibrium and Kinetic Study of Anionic and Cationic Pollutants Remediation by Limestone–Chitosan–Alginate Nanocomposite from Aqueous Solution

In this work, low-cost and readily available limestone was converted into nanolimestone chitosan and mixed with alginate powder and precipitate to form a triple nanocomposite, namely limestone—chitosan–alginate (NLS/Cs/Alg.), which was used as an adsorbent for the removal of brilliant green (BG) and Congo red (CR) dyes in aqueous solutions. The adsorption studies were conducted under varying parameters, including contact time, temperature, concentration, and pH. The NLS/Cs/Alg. was characterized by SEM, FTIR, BET, and TEM techniques. The SEM images revealed that the NLS/Cs/Alg. surface structure had interconnected pores, which could easily trap the pollutants. The BET analysis established the surface area to be 20.45 m²/g. The recorded maximum experimental adsorption capacities were 2250 and 2020 mg/g for CR and BG, respectively. The adsorption processes had a good fit to the kinetic pseudo second order, which suggests that the removal mechanism was controlled by physical adsorption. The CR and BG equilibrium data had a good fit for the Freundlich isotherm, suggesting that adsorption processes occurred on the heterogeneous surface with a multilayer formation on the NLS/Cs/Alg. at equilibrium. The enthalpy change (ΔH⁰) was 37.7 KJ mol⁻¹ for CR and 8.71 KJ mol⁻¹ for BG, while the entropy change (ΔS⁰) was 89.1 J K⁻¹ mol⁻¹ for CR and 79.1 J K⁻¹ mol⁻¹ BG, indicating that the adsorption process was endothermic and spontaneous in nature.     

Well-Orientation Strategy Biosynthesis of Cefuroxime-Silver Nanoantibiotic for Reinforced Biodentine™ and Its Dental Application against Streptococcus mutans

Dental caries results from the bacterial pathogen Streptococcus mutans (S. mutans) and is the maximum critical reason for caries formation. Consequently, the present study aims to evaluate the antibacterial activity of a newly synthesized nanoantibiotic–Biodentine formulation. The silver nanoparticles (ROE-AgNPs) were biosynthesized from the usage of Rosmarinus officinalis L. extract (ROE) and conjugated with cefuroxime to form Cefuroxime-ROE-AgNPs. Using Biodentine™ (BIOD), five groups of dental materials were prepared, in which Group A included conventional BIOD, Group B included BIOD with ROE-AgNPs, Groups C and D included BIOD with Cefuroxime-ROE-AgNPs at concentrations of 0.5% and 1.5% cefuroxime, respectively, and Group E included BIOD with 1.5% cefuroxime. The synthesized ROE-AgNPs or Cefuroxime-ROE-AgNPs were characterized for conjugating efficiency, morphology, particle size, and in vitro release. Minimum inhibitory concentration (MIC) of the cefuroxime, ROE-AgNPs, and Cefuroxime-ROE-AgNPs were additionally evaluated against cefuroxime resistant S. mutans, which furthered antibacterial efficacy of the five groups of dental materials. The UV-Visible spectrum showed the ROE-AgNPs or Cefuroxime-ROE-AgNPs peaks and their formation displayed through transmission electron microscopy (TEM), X-ray diffraction (XRD) pattern, and Fourier transforms infrared (FTIR) analysis. The end result of Cefuroxime-ROE-AgNPs showed conjugating efficiency up to 79%. Cefuroxime-ROE-AgNPs displayed the highest antibacterial efficacy against S. mutans as compared to cefuroxime or ROE-AgNPs alone. Moreover, the MIC of ROE-AgNPs and Cefuroxime-ROE-AgNPs was detected against S. mutans to be 25 and 8.5 μg/mL, respectively. Consequently, Cefuroxime-ROE-AgNPs displayed that a decrease in the MIC reached to more than three-fold less than MIC of ROE-AgNPs on the tested strain. Moreover, Cefuroxime-ROE-AgNPs/BIOD was employed as a novel dental material that showed maximum antimicrobial activity. Groups C and D of novel materials showed inhibitory zones of 19 and 26 mm, respectively, against S. mutans and showed high antimicrobial rates of 85.78% and 91.17%, respectively. These data reinforce the utility of conjugating cefuroxime with ROE-AgNPs to retrieve its efficiency against resistant S. mutant. Moreover, the nanoantibiotic delivered an advantageous antibacterial effect to BIOD, and this may open the door for future conjugation therapy of dental materials against bacteria that cause dental caries.     

Enhancing the photocatalytic activity of Ga2O3–TiO2 nanocomposites using sonication amplitudes for the degradation of Rhodamine B dye

A Ga₂O₃–TiO₂ photocatalyst was synthesized by a mechanomixing method followed by a sonication technique using different amplitudes of sonication (0%, 25%, 50%, and 75% of 20 kHz). The prepared photocatalysts were characterized by X-ray diffraction, X-ray photoelectron spectroscopy, Fourier-transform infrared, Brunauer–Emmett–Teller (BET) surface area (S_BET), zeta potential, and optical techniques. Ga₂O₃–TiO₂ exhibited an excellent photocatalytic activity for Rhodamine B (RhB) dye degradation under UV irradiation. The RhB degradation rate rose linearly with the increase of sonication amplitude. The photodegradation rate (k) of the synthesized samples was calculated according to the Langmuir–Hinshelwood kinetic expression. It reached a maximum of 5.25 × 10⁻² min⁻¹ with R² of 0.99 for Ga₂O₃–TiO₂ (75%) photocatalysts. The main reactive species were detected through radical scavenging experiments. The formation of hole reactive species is the rate-determining step in the case of Ga₂O₃–TiO₂ (75%) photocatalysts.     

Validated LC–MS/MS method for the simultaneous determination of enalapril maleate,nitrendipine, hydrochlorothiazide,and their major metabolites in human plasma

Hypertension is a major risk factor for atherosclerosis and ischemic heart disease. Most hypertensive patients need a combination of antihypertensive agents to achieve therapeutic goals. A rapid, sensitive, and selective liquid chromatography-tandem mass spectrometric method was developed and validated for simultaneous determination of enalapril maleate (ENA) and its major metabolite enalaprilat (ENAT), nitrendipine (NIT) and its major metabolite dehydronitrendipine (DNIT), and hydrochlorothiazide (HCT) in human plasma using felodipine as an internal standard (IS). The drugs were extracted from plasma using one-step protein precipitation. Chromatographic separation was performed on a Symmetry C₁₈ column, with water and acetonitrile (10:90, v/v) as mobile phase. The detection was carried out using multiple reaction monitoring mode and coupled with electrospray ionization source. Multiple reaction monitoring transitions were m/z 377.1 → 234.1 for ENA, m/z 349.2 → 206.1 for ENAT, m/z 361.2 → 315.1 for NIT, m/z 359 → 331 for DNIT, m/z 295.9 → 205.1 for HCT, and m/z 384.1 → 338 for felodipine (IS). The method was linear over concentration ranges of 1–200, 20–500, 5–200, 2–100, and 5–200 ng/mL for ENA, ENAT, NIT, DNIT, and HCT, respectively, with r² ≥ 0.99. Method validation was performed according to U.S. Food and Drug Administration guidelines. The validated method showed good sensitivity and selectivity and could be applied for therapeutic drug monitoring and bioequivalence studies.     

New Luminescent Bioprobes Eu(lll)-phloroglucinol Derivatives and Their Spectrofluorimetric, Electrochemical Interactions with Nucleotides and DNA

Two new ligands derived from phloroglucinol 2-{[(4-methoxy benzoyl ) oxy ] } methyl benzoic acid[L1] and 2-{[(4-methyl benzoyl )oxy] methyl} benzoic acid[L2] were synthesized. The solid complex Eu(III)-L2 has been synthesised and characterized by elemental analysis ,UV and IR spectra. The reaction of Eu(III) with the two synthesized ligands has been investigated in I = 0.1 mol dm^-3 p-toluene sulfonate by cyclic voltammetry and square wave voltammetry. The reaction of Eu (III)–L1 and Eu (III)–L2 binary complexes with nucleotide 5′-AMP , 5′-ADP ,5′-ATP , 5′- GMP , 5′-IMP , and 5′-CMP has been investigated using UV, fluorescence and electrochemical methods. The experimental conditions were selected such that self-association of the nucleotides and their complexes was negligibly small, that is, the monomeric complexes were studied. The interaction of the Eu(III)–L1 or L 2 solid complexes with calf-thymus DNA has been investigated by fluorescence and electrochemical methods including cyclic voltammetery(CV) ,differential pulse polarography (DPP) and square wave voltammetry (SWV) on a glassy carbon electrode. The fluorescence intensity of Eu(III)-L2 complex was enhanced with the addition of DNA. Under optimal conditions in phosphate buffer pH 7.0 at 25 °C the linear range is 3–20 μM for calf thymus DNA (CT–DNA) and the corresponding determination limit is 1.8 μM.     

On the fixed points of certain types of functions for constructing associated calculi

This paper introduces a new general view of constructing different types of strictly increasing continuous function \(\beta :{I}\subseteq {{\mathbb {R}}}\rightarrow {I}\) that can be basis of different calculi. Fixed points play an essential role in constructing these types. Moreover, two of these types interpret the well-known q-Jackson and forward calculi to be special cases of our general point of view. We discuss three kinds of fixed points with their effect on the limit of the composite functions \(\beta ^{k}(t)=\underbrace{\beta \circ \beta \cdots \circ \beta (t)}_{k{\text {-}}\mathrm{{times}}}\), \(k\in {{\mathbb {N}}_{0}}\). The main study presents different types of the function \(\beta (t)\) contain finite and denumerable fixed points that one can construct the associated calculi.