PRO_SELECT: Combining structure-based drug design and combinatorial chemistry for rapid lead discovery. 1. Technology

This paper describes a novel methodology, PRO_SELECT, which combines elements of structure-based drug design and combinatorial chemistry to create a new paradigm for accelerated lead discovery. Starting with a synthetically accessible template positioned in the active site of the target of interest, PRO_SELECT employs database searching to generate lists of potential substituents for each substituent position on the template. These substituents are selected on the basis of their being able to couple to the template using known synthetic routes and their possession of the correct functionality to interact with specified residues in the active site. The lists of potential substituents are then screened computationally against the active site using rapid algorithms. An empirical scoring function, correlated to binding free energy, is used to rank the substituents at each position. The highest scoring substituents at each position can then be examined using a variety of techniques and a final selection is made. Combinatorial enumeration of the final lists generates a library of synthetically accessible molecules, which may then be prioritised for synthesis and assay. The results obtained using PRO_SELECT to design thrombin inhibitors are briefly discussed.     

Complexation,crystallography, and electrochemistry of new chelating nicotinyl and thiazolyl anthraquinone ligands

Chelating anthraquinone ligands that contain nicotinyl and thiazolyl binding units have been synthesized. The complexation chemistry of these new ligands has also been explored using cadmium(II), lead(II), and ruthenium(II). The nicotinic substituted anthraquinone acts as a bidentate ligand, while the thiazolyl substituted anthraquinone binds in a tetradentate arrangement, not previously observed. Due to steric limitations, the number of these ligands that can coordinate to metal centers appears limited to bis-substituted products. Crystallographic data for both the free ligands and the cadmium and lead complexes are reported. Electrochemical data indicate that interaction does not take place between the intraannular carbonyl group and the neighboring metal centers within these complexes.     

Preparation and properties of the aqua ions [W(4)S(4)(H(2)O)(12)](n+) (n = 5, 6) and crystal structure of (Me(2)NH(2))(6)[W(4)S(4)(NCS)(12)].0.5H(2)O

The [3 + 1] reaction of [W(3)S(4)(H(2)O)(9)](4+) with [W(CO)(6)] in 2 M HCl under hydrothermal conditions (130 degrees C) gives the [W(4)S(4)(H(2)O)(12)](6+) cuboidal cluster, reduction potential 35 mV vs NHE (6+/5+ couple). The reduced form is obtained by controlled potential electrolysis. X-ray crystal structure was determined for (Me(2)NH(2))(6)[W(4)S(4)(NCS)(12)].0.5H(2)O. The W-W and W-S bond lengths are 2.840 and 2.379 A, respectively.     

PORPHYRIN ACCUMULATION BY ATHEROMATOUS PLAQUES OF THE AORTA

Abstract A complex mixture of porphyrins termed hematoporphyrin derivative (HPD) has been clinically useful for tumor localization. When sections of human aorta containing atheromatous plaques were incubated with HPD, accumulation of fluorescent porphyrin was observed within the plaques. Analytic studies showed that the plaques had accumulated hematoporphyrin (HP), which is substantially more hydrophilic than that HPD fraction generally associated with tumor localization. Fluorescence spectra suggest that the plaque binding sites of HP resemble the relatively aqueous micelles formed by the detergent sodium dodecylsulfate. This result has implications for tumor-localization procedures, since accumulation of hydrophilic porphyrins by tumors has been reported.     

Thermodynamic, kinetic and pH studies on the reactions of NCS-, N3-, and CH3CO2- with Fusarium galactose oxidase

Thermodynamic and kinetic studies on the X- = NCS-, N3-, and CH3CO2- replacement of H2O/OH- at the CuII exogenous site of the tyrosyl-radical-containing enzyme galactose oxidase (GOaseox) from Fusarium (NRR 2903), have been studied by methods involving UV-vis spectrophotometry (25 degrees C), pH range 5.5-8.7, I = 0.100 M (NaCl). In the case of N3- and CH3CO2- previous X-ray structures have confirmed coordination at the exogenous H2O/OH- site. From the effect of pH on the UV-vis spectrum of GOaseox under buffer-free conditions, acid dissociation constants of 5.7 (pK1a; coordinated H2O) and 7.0 (pK2a; H+Tyr-495) have been determined. At pH 7.0 formation constants K(25 degrees C)/M-1 are NCS- (480), N3- (1.98 x 10(4)), and CH3CO2- (104), and from the variations in K with pH the same two pKa values are seen to apply. No pK1a is observed when X- is coordinated. From equilibration stopped-flow studies rate constants at pH 7.0 for the formation reaction kf(25 degrees C)/M-1 s-1 are NCS- (1.13 x 10(4)) and N3- (5.2 x 10(5)). Both K and kf decrease with increasing pH, consistent with the electrostatic effect of replacing H2O by OH-. In the case of the GOaseox Tyr495Phe variant pK1a is again 5.7, but no pK2a is observed, confirming the latter as acid dissociation of protonated Tyr-495. At pH 7.0, K for the reaction of four-coordinate GOaseox Tyr495Phe with NCS- (1.02 x 10(5) M-1) is more favorable than the value for GOaseox. Effects of H+Tyr-495 deprotonation on K are smaller than those for the H2O/OH- change. The pK1a for GOasesemi is very similar (5.6) to that for GOaseox (both at CuII), but pK2a is 8.0. At pH 7.0 values of K for GOasesemi are NCS- (270 M-1), N3- (4.9 x 10(3)), and CH3CO2- (107).     

Heteronuclear bipyrimidine-bridged Ru-Ln and Os-Ln dyads: low-energy 3MLCT states as energy-donors to Yb(III) and Nd(III)

The complexes [Ru((t)Bu(2)bipy)(bpym)X(2)] (X = Cl, NCS) and [M((t)Bu(2)bipy)(2)(bpym)][PF(6)](2) (M = Ru, Os) all have a low-energy LUMO arising from the presence of a 2,2'-bipyrimidine ligand, and consequently have lower-energy (1)MLCT and (3)MLCT states than analogous complexes of bipyridine. The vacant site of the bpym ligand provides a site at which [Ln(diketonate)(3)] units can bind to afford bipyrimidine-bridged dinuclear Ru-Ln and Os-Ln dyads; four such complexes have been structurally characterised. UV/Vis and luminescence spectroscopic studies show that binding of the Ln(III) fragment at the second site of the bpym ligand reduces the (3)MLCT energy of the Ru or Os fragment still further. The result is that in the dyads [Ru((t)Bu(2)bipy)X(2)(mu-bpym)Ln(diketonate)(3)] (X = Cl, NCS) and [Os((t)Bu(2)bipy)(2)(mu-bpym)Ln(diketonate)(3)][PF(6)](2) the (3)MLCT is too low to sensitise the luminescent f-f states of Nd(III) and Yb(III), but in [Ru((t)Bu(2)bipy)(2)(mu-bpym)Ln(diketonate)(3)][PF(6)](2) the (3)MLCT energy of 13,500 cm(-1) permits energy transfer to Yb(III) and Nd(III) resulting in sensitised near-infrared luminescence on the microsecond timescale.     

Glas und Glasrohstoffe

Ohne Zusammenfassung     

Sonogashira/N-acyliminium ion aromatic π-cyclisation processes: access to tetra- and pentacyclic lactams

Application of the Sonogashira reaction of N-alkynylimides with 2-iodophenol or 2-iodo-N-tosylaniline affords 2-(N-alkylimino)-benzofurans and indoles in good yield. Selective partial reduction of the latter followed by treatment with TsOH generates N-acyliminium ions, which cyclise to afford tetra- and pentacyclic lactams in good yield. The latter are reduced to the analogous cyclic amines by BH₃.