Controlling the optical and catalytic properties of artificial metalloenzyme photocatalysts using chemogenetic engineering

Visible light photocatalysis enables a broad range of organic transformations that proceed via single electron or energy transfer. Metal polypyridyl complexes are among the most commonly employed visible light photocatalysts. The photophysical properties of these complexes have been extensively studied and can be tuned by modifying the substituents on the pyridine ligands. On the other hand, ligand modifications that enable substrate binding to control reaction selectivity remain rare. Given the exquisite control that enzymes exert over electron and energy transfer processes in nature, we envisioned that artificial metalloenzymes (ArMs) created by incorporating Ru(ii) polypyridyl complexes into a suitable protein scaffold could provide a means to control photocatalyst properties. This study describes approaches to create covalent and non-covalent ArMs from a variety of Ru(ii) polypyridyl cofactors and a prolyl oligopeptidase scaffold. A panel of ArMs with enhanced photophysical properties were engineered, and the nature of the scaffold/cofactor interactions in these systems was investigated. These ArMs provided higher yields and rates than Ru(Bpy)₃²⁺ for the reductive cyclization of dienones and the [2 + 2] photocycloaddition between C-cinnamoyl imidazole and 4-methoxystyrene, suggesting that protein scaffolds could provide a means to improve the efficiency of visible light photocatalysts.

Artificial metalloenzyme visible light photocatalysts possess enhanced optical properties and are competent towards single electron and energy transfer organic transformations.     

The facile and efficient organocatalytic platform for accessing 1,2,4-selenadiazoles and thiadiazoles under aerobic conditions

The first organocatalytic approach towards synthesis of rarely explored 1,2,4-selenadiazole and thiadiazole scaffolds have been devised using corresponding carboxamides as substrates. The transformations were realized using two distinct conditions in the presence of catalytic vitamin B₃ or thiourea under aerobic conditions. Developed methods overcome the associated limitations of previous reported approaches and the desired products were obtained in high yields and selectivity without the formation of toxic side-products.     

Is Bell-type inequality violated for K0-\bar K^0 , B0-\bar B^0 , . . . systems?

We extend the Clauser-Horne formulation of Bell-type inequality for the correlated pair of decaying and oscillating (neutral pseudo-scalar) meson-antimesons, using a few supplementary assumptions. The quantum-mechanical predictions for the B⁰- \(\bar B^0 \) system do lead to violations of this inequality under certain conditions. Further work is called for to investigate the possibility of dispensing with the supplementary assumptions.     

Reaction of cis-Ru(bpy)2Cl2 with 1-phenyl 5-(aminophenyl) 9-(2-pyridyl) benzimidazole derivatives: crystal structures of N-(4-chlorophenyl) imidazo[1,5a] pyridine and cis-[Ru(bpy)2(MeCN)2](ClO4)2

Reaction of 1-phenyl 5-(aminophenyl) 9-(2-pyridyl) benzimidazole derivatives (2) with cis-Ru(bpy)₂Cl₂ in MeCN results in the formation of N-(aryl) imidazo[1,5a] pyridine derivatives (4) and cis-[Ru(bpy)₂(MeCN)₂]²⁺ (5). Crystal structures of N-(4-chlorophenyl) imidazo[1,5a] pyridine (4b) and cis-[Ru(bpy)₂(MeCN)₂](ClO₄)₂ (5) are also reported.     

Protonation of phenylboronic acid: Comparison of G3B3 and G2MP2 methods

G3B3 and G2MP2 calculations using Gaussian 03 have been carried out to investigate the protonation preferences for phenylboronic acid. All nine heavy atoms have been protonated in turn. With both methodologies, the two lowest protonation energies are obtained with the proton located either at the ipso carbon atom or at a hydroxyl oxygen atom. Within the G3B3 formalism, the lowest‐energy configuration by 4.3 kcal · mol^?1 is found when the proton is located at the ipso carbon, rather than at the electronegative oxygen atom. In the resulting structure, the phenyl ring has lost a significant amount of aromaticity. By contrast, calculations with G2MP2 show that protonation at the hydroxyl oxygen atom is favored by 7.7 kcal · mol^?1. Calculations using the polarizable continuum model (PCM) solvent method also give preference to protonation at the oxygen atom when water is used as the solvent. The preference for protonation at the ipso carbon found by the more accurate G3B3 method is unexpected and its implications in Suzuki coupling are discussed. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2007     

Solution of coupled differential equations of soliton theory

We present the complete set of solutions of the coupled differential equations of the form ()²=(), ² =(). Equations of this form appear in several physical situations.     

Bacterial transport in porous media: New aspects of the mathematical model

Transport of bacteria is an important aspect from scientific, industrial and environmental point of view. In this work, a one-dimensional mathematical model based on linear equilibrium adsorption of bacteria has been developed to predict bacterial transport through porous media. This model is more realistic than existing models because of its coupling both physicochemical and biological phenomena. Two important biological phenomena, the growth and decay of bacterial cells and chemotactic/chemotaxis of bacteria along with physicochemical properties have been adequately incorporated which are quite new aspects in our model. In agreement with experimental study by [D.K. Powelson, R.J. Simpson, C.P. Gerba, J. Environ. Qual. 19 (1990) 396], model simulations indicated that enhancement of breakthrough occurs due to increase in flow velocity, cell concentration, substrate concentration, respectively. It has also been found that chemo tactic has a significant effect on bacterial transport, especially under conditions of considerable substrate gradient and at low pore velocity. The importance of threshold concentration of captured cells (σ₀) on bacterial transport has also been identified which is also a new aspect in our model.     

Organocatalytic oxidative synthesis of C2-functionalized benzoxazoles,naphthoxazoles, benzothiazoles and benzimidazoles

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Effect of residual Doppler averaging on the probe absorption in cascade type system: A comparative study

Effect of residual Doppler averaging on the probe absorption in an alkali vapor medium in the presence of a coherent pump beam is studied analytically for the Ξ type system. A coherent probe field is assumed to connect the ground level with the intermediate level whereas a coherent control beam is supposed to act between the intermediate energy level and the uppermost level. Optical Bloch equations(OBE) for a three-level Ξ type system and a four-level Ξ type system are derived by using density matrix formalism. These equations are solved by an analytic method to determine the probe response, which not only depends on the wavelength difference between the control(pump) field and the probe field but shows substantially different features depending on whether the wavelength of the control field is greater than that of the probe field or the reverse. The effect of temperature on probe response is also shown. Enhancement in probe absorption and additional features are noticed under a strong probe limit at room temperature. The four-level Ξ type system has two ground levels and this leads to substantial modification in the simulated probe absorption as compared to the three-level system.