Permeation associated with three-phase-partitioning method on release of green fluorescent protein

Transformed cells of Escherichia coli expressing recombinant green fluorescent protein (GFPuv) were subjected to two methods of extraction: (1) freezing/thawing/sonication (FTS) cycles prior to the three-phase partitioning (TPP) method, or (2) directly to TPP extraction. The amount of GFPuv released by the FTS plus TPP method varied: 374μg/mL (first cycle), 93–442 μg/mL (second cycle), 32–359 μg/mL (third cycle), 18–115 μg/mL (fourth cycle). The GFPuv yields by the second method (TPP only) were, 23–54 μg/mL for the first extract and 33–91 μg/mL for the second. The FTS plus TPP method released similar amounts of GFPuv to that extracted by TPP; and provided a better mixture elution through the hydrophobic interaction column: 13–63 μg/mL for FTS plus TPP methods, and 2.5–13 μg/mL for TPP. The results showed that although selective permeation is a more laborious methodology, it was more efficient for obtaining of GFPuv in relation to the direct extraction of the cells for TPP.     

Conjugate addition with 2-pyridylcopper and lithium 2-pyridylcuprates

2-Pyridylcopper/dibutyl sulfide, 2-pyridylcopper/tributylphosphine, lithium di(2-pyridyl)cuprate and lithium (2-pyridyl)(phenyl)cuprate all add the 2-pyridyl group to 4-phenyl-3-buten-2-one in good yields. The cuprates also add the 2-pyridyl group to ethyl 3-phenylpropenoate.     

On the statistical independence of various column contributions to band broadening. Part 1: Second moment contributions from statistically independent,longitudinal diffusion in both phases

The total length-based second moment contribution from longitudinal sample diffusion in both phases on a column, σD , is derived by adding individual partial differential contributions to a partial differential equation accounting for the longitudinal diffusion processes only. Although each diffusion-dispersed sample part is equilibrated between two phases, the resulting σ,D (= 2D _mt _m + 2D _st _s) can be interpreted as the sum of two independent contributions in accordance with the variance addition rule. (D _m and D _s are the mean diffusion coefficients and t _mand t _s the mean residence times of the sample in the mobile and stationary phases, respectively.) The same σD expression is derived from the random walk model of Giddings by treating the diffusional process in each phase as statistically independent of the other processes. Under these conditions the broadening contribution from longitudinal diffusion in the mobile phase is shown to be independent of the velocity profile.     

Escherichia coli single-stranded DNA-binding protein,a molecular tool for improved sequence quality in pyrosequencing

Pyrosequencing is a four-enzyme bioluminometric DNA sequencing technique based on a DNA sequencing by synthesis principle. Currently, the technique is limited to analysis of short DNA sequences exemplified by single-nucleotide polymorphism analysis. In order to expand the field for pyrosequencing, the read length needs to be improved and efforts have been made to purify reaction components as well as add single-stranded DNA-binding protein (SSB) to the pyrosequencing reaction. In this study, we have performed a systematic effort to analyze the effects of SSB by comparing the pyrosequencing result of 103 independent complementary DNA (cDNA) clones. More detailed information about the cause of low quality sequences on templates with different characteristics was achieved by thorough analysis of the pyrograms. Also, real-time biosensor analysis was performed on individual cDNA clones for investigation of primer annealing and SSB binding on these templates. Results from these studies indicate that templates with high performance in pyrosequencing without SSB possess efficient primer annealing and low SSB affinity. Alternative strategies to improve the performance in pyrosequencing by increasing the primer-annealing efficiency have also been evaluated.     

Staudinger ligation: a peptide from a thioester and azide

[reaction: see text] The technique of native chemical ligation enables the total chemical synthesis of proteins. This method is limited, however, by an absolute requirement for a cysteine residue at the ligation juncture. Here, this restriction is overcome with a new chemical ligation method in which a phosphinobenzenethiol is used to link a thioester and azide. The product is an amide with no residual atoms.     

Charged-particle multiplicity distribution in 100-GeV/c \bar pd and π− interactions

We present data on \(\bar pn\) and π^? n collisions obtained from an exposure of the 30′' FNAL deuterium filled bubble chamber to a mixed \({{\bar p} \mathord{\left/ {\vphantom {{\bar p} {\pi ^ - }}} \right. \kern-0em} {\pi ^ - }}\) beam with a momentum of 100 GeV/c. We find that in 17±2% of the collisions with the antiproton there is an interaction on the spectator while for the collisions with π^? mesons the corresponding number is 15±2%. The \(\bar pn\) and π^? n multiplicity distributions have average charged multiplicities of 6.46±0.07 and 6.53±0.08 respectively. The average multiplicities for both types of interactions are slightly smaller than those for the corresponding reactions on hydrogen by an amount that is the same as observed at other energies. As an estimate of \(\bar pn\) annihilation we have calculated the difference \(\sigma _n (\bar pn) - \sigma _n (pn)\) for each prong numbern. We find an average multiplicity of 9±1, a value close to that for \(\bar pp\) annihilation at the same energy. combining our data with lower energy \(\bar pn\) annihilation data, we observe that the average negative multiplicity is systematically larger than that for \(\bar pp\) annihilation similar to the difference between neutron and proton target data with other beam projectiles.     

Selective determination of organophosphate flame retardants and plasticizers in indoor air by gas chromatography, positive-ion chemical ionization and collision-induced dissociation mass spectrometry

Gas chromatography/ion trap mass spectrometry with in-source ionization and dissociation was used in positive-ion chemical ionization (PICI) mode for the determination of organophosphate triesters in indoor air. These compounds are widely used as additive flame retardants and plasticizers in different types of materials and have become ubiquitous pollutants in indoor environments. When using collision-induced dissociation in PICI mode the fragmentation of the organophosphate triesters can be performed in a more controllable way than in electron ionization (EI) mode. The developed selected-reaction monitoring method provided high selectivity for the investigated compounds. For 8-h air measurements (corresponding to 1.5 m3 of sampled air) the limit of detection of the method was determined to be in the range 0.1-1.4 ng m(-3), which is comparable with nitrogen-phosphorus detection and about 50-fold lower than when using EI in selected-ion monitoring mode. The presented method was applied to samples from three common indoor environments, in which a number of organophosphate triesters were identified and quantified. The dominating compound was found to be tris(2-chloropropyl) phosphate, which occurred at levels up to 0.8 microg m(-3).     

Comparison of Si-O-C interfacial bonding of alcohols and aldehydes on Si(111) formed from dilute solution with ultraviolet irradiation

Aliphatic alcohols and aldehydes were reacted with the Si(111)-H surface to form Si-O-C interfacial bonds from dilute solution by using ultraviolet light. The resulting monolayers were characterized by using transmission infrared spectroscopy, spectroscopic ellipsometry, and contact angle measurements. The effect of different solvents on monolayer quality is presented. The best monolayers were formed from CH(2)Cl(2). The optimized monolayers were thoroughly characterized to determine the film structure and monolayer stability. The UV-promoted, alcohol-functionalized, and aldehyde-functionalized monolayers are of comparable quality to those previously prepared by other means. Although both molecules are tethered through a Si-O-C bond, the film reactivity is distinctly different with the aldehyde films being more chemically resistant. The differences in chemical reactivity, vibrational spectra, hydrophobicity, and ellipsometric thickness between the alcohol and aldehyde monolayers are attributed to a difference in molecular coverage and monolayer formation.     

The behaviour of micro-bitumen drops in aqueous clay environments

This study summarises the rheological behaviour of emulsion bitumen drops in the presence of aqueous solutions of de-ionised or process water (DIW or PW) containing montmorillonite clays (M) and/or calcium ions (Ca++). The presence of calcium ions and montmorillonite clays resulted in the plastic behaviour of bitumen drops. In a DIW+M+Ca++ system, increasing temperature and calcium ion concentration resulted in an increase in the number and degree of plastic bitumen drops. In the presence of considerable amounts of Ca++ ions and/or at higher experimental temperature, bitumen drops in a PW+M system exhibited no significant overall plasticity of their surfaces. Both calcium and sodium ions contained in process water compete with each other to occupy the montmorillonite clay surface. At the pH value of process water (pH congruent with8), increasing the temperature did not change the value of bitumen droplet zeta potential. Stability of bitumen-in-water emulsions at 22 degrees C showed that bitumen droplets coalesced upon contact in the DIW+M system. The addition of calcium ions (Ca++) led to the inhibition of coagulation and coalescence of bitumen droplets, which may indicate the formation of CaM aggregates at the bitumen-water interface.