Identification of archaeal proteins that affect the exosome function in vitro

Background  

The archaeal exosome is formed by a hexameric RNase PH ring and three RNA binding subunits and has been shown to bind and degrade RNA in vitro. Despite extensive studies on the eukaryotic exosome and on the proteins interacting with this complex, little information is yet available on the identification and function of archaeal exosome regulatory factors.     

Effects of Lactobacillus rhamnosus on zebrafish oocyte maturation: an FTIR imaging and biochemical analysis

The aim of this study was to verify the effects of probiotic Lactobacillus rhamnosus on zebrafish oocyte maturation using FPA (focal plane array) FTIR imaging together with specific biochemical assays (SDS-PAGE, real-time PCR and enzymatic assay). Oocyte growth is prevalently due to a vitellogenic process which consists of the hepatic synthesis of vitellogenin and its selective uptake during maturation. The administration of L. rhamnosus IMC 501 for 10 days induced chemical changes to oocyte composition, promoting the maturation process. Some interesting biochemical features, linked to protein secondary structure (amide I band) and to phospholipidic and glucidic patterns, were detailed by vibrational analysis. The spectroscopic results were supported by the early increase of the lysosomal enzyme involved in the final oocyte maturation, the cathepsin L. This enzyme increases during follicle maturation, with the highest levels in class IV oocytes. In treated females, class III oocytes showed higher cathepsin L gene expression and enzymatic activity, with levels comparable to class IV oocytes isolated from controls; this can be related to the proteolytic cleavage of the higher molecular mass yolk protein components, as evidenced by SDS-PAGE.     

A new on-line solid phase extraction high performance liquid chromatography tandem mass spectrometry method to study the sun light photodegradation of mono-chloroanilines in river water

The study investigates the natural photodegradation pathway of mono-chloroanilines in river waters, with the aim to identify the predominant photoproducts formed. At this purpose a new sensitive on-line SPE HPLC–MS/MS method has been developed with LOQ values equal or lower than the legal threshold concentration levels allowed for mono-chloroanilines in waters. The degradation processes of o-, m- and p-chloroaniline have been investigated subjecting their solutions, prepared both in ultrapure and in river water, to sun light irradiation simulated by a solar box system. The SPE HPLC–MS/MS methodology allowed to evaluate the degradation kinetics, to identify the predominant photodegradation products and to propose the chemical structures. Two photoproducts (aniline and 3-aminophenol), for which standards are available, have also been quantified.     

Thorough evaluation of the validity of conventional enantio-gas chromatography in the analysis of volatile chiral compounds in mandarin essential oil: A comparative investigation with multidimensional gas chromatography

The present research is focused on the determination of the enantiomeric distribution of chiral compounds, contained in mandarin essential oils, by means of conventional chiral gas chromatography with flame ionization detection (enantio-GC-FID); the results attained were compared with those derived from heart-cutting multidimensional GC-mass spectrometry (MDGC/MS), to evaluate the reliability of the monodimensional technique as a tool for quality control. The Deans-switch MDGC system was equipped with two GC ovens, which were connected via a heated transfer line, a flame ionization detector (FID1) in the first dimension and a quadrupole MS as second-dimension detector. The a priori knowledge of potential co-elutions concerning target compounds (an enantiomer and an interfering compound), when using enantio-GC-FID, could enable the use of corrected enantiomer excess values. Correction factors could be calculated through a preliminary GC-FID analysis (using an apolar column), considering the peak areas of the known interferences. The method used for the calculation of a so-called “coelution correction factor” is described, along with some examples.     

Monogenic pseudo‐complex power functions and their applications

The use of a non‐commutative algebra in hypercomplex function theory requires a large variety of different representations of polynomials suitably adapted to the solution of different concrete problems. Naturally arises the question of their relationships and the advantages or disadvantages of different types of polynomials. In this sense, the present paper investigates the intrinsic relationship between two different types of monogenic Appell polynomials. Several authors payed attention to the construction of complete sets of monogenic Appell polynomials, orthogonal with respect to a certain inner product, and used them advantageously for the study of problems in 3D‐elasticity and other problems. Our goal is to show that, as consequence of the binomial nature of those generalized Appell polynomials, their inner structure is determined by interesting combinatorial relations in which the central binomial coefficients play a special role. As a byproduct of own interest, a Riordan–Sofo type binomial identity is also proved. Copyright © 2013 John Wiley & Sons, Ltd.     

On the spectrum of stiffness matrices arising from isogeometric analysis

We study the spectral properties of stiffness matrices that arise in the context of isogeometric analysis for the numerical solution of classical second order elliptic problems. Motivated by the applicative interest in the fast solution of the related linear systems, we are looking for a spectral characterization of the involved matrices. In particular, we investigate non-singularity, conditioning (extremal behavior), spectral distribution in the Weyl sense, as well as clustering of the eigenvalues to a certain (compact) subset of \(\mathbb C\) . All the analysis is related to the notion of symbol in the Toeplitz setting and is carried out both for the cases of 1D and 2D problems.     

Numerical Simulation of a Turbulent FSI Benchmark Case

In an effort to expand the capabilities of a validated simulation environment for fluid-structure interaction to turbulent flows, we present the simulation of a turbulent FSI benchmark case with large displacements in a simplified two-dimensional unsteady RANS setup. We find a fair agreement to experimental data that encourages further refinement of our approach and future three-dimensional simulations with eddy-resolving schemes. (© 2014 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim)