Synthesis of 4-deoxy-4-nitrosialic acid

The synthesis of 4-deoxy-4-nitrosialic acid (3,4,5-trideoxy-4-nitro-D-glycero-beta-D-galacto-non-2-ulopyranosonic acid, 5), was completed in seven steps starting from D-arabinose. Coupling of the 6-carbon fragment, 2-acetamido-1,2-dideoxy-1-nitro-D-mannitol (6) with ethyl alpha-(bromomethyl)acrylate afforded a 2 : 1 mixture of ethyl 5-acetamido-2,3,4,5-tetradeoxy-2-methylene-4-nitro-D-glycero-D-galacto-nononate (9a-S) and ethyl 5-acetamido-2,3,4,5-tetradeoxy-2-methylene-4-nitro-D-glycero-D-talo-nononate (9a-R). This mixture of enones was subjected to ozonolysis, and following reduction of the ozonide, the resultant products cyclised to the pyranosides. The target compound, ethyl 4-deoxy-4-nitrosialate (11a) was isolated by fractional crystallisation. Hydrolysis of the ethyl ester proved problematic; thus, the synthesis was modified by using tert-butyl alpha-(bromomethyl)acrylate. Following ozonolysis of the corresponding tert-butyl enoate esters and diastereomer separation, the tert-butyl ester of 4-nitrosialic acid (11b) could be deprotected under acidic conditions to afford . The target compound is a useful intermediate for synthesis of a variety of C-4 substituted sialic acid derivatives, and it is synthesised by a modular route.     

Effects of chemical modifications and MMT nanoclay addition on transport phenomena of naturally woven coconut sheath/polyester nanocomposites

Studies on the behavior of molecular transport properties such as thermal conductivity, gas permeability, volume and surface resistivity have been carried out for the naturally woven coconut sheath (CS) fiber reinforced composites with the addition of nanoclay and chemical treatment of fiber. The compression molding technique was used to fabricate the coconut sheath/clay reinforced hybrid composites. The morphological studies such as X-ray diffractogram (XRD), transmission electron microscopy (TEM) and scanning electron microscopy (SEM) have been carried out for polyester nanocomposites and coconut sheath fiber. The decreased gas permeability, thermal conductivity and volume and surface resistivity have been observed with increasing the weight percentage of nanoclay in polyester matrix. In chemical modifications, the alkali and silane treated coconut sheath reinforced composites have shown great influence on the transport properties due to the increasing hydrophilic nature by the topographical changes at the fiber surface. Dielectric strength has also been reported in this paper for all types of composites. Infra-red (IR) spectra have also been taken to study the physical and chemical structural changes of treated coconut sheath.     

Guanine-rich RNAs and DNAs that bind heme robustly catalyze oxygen transfer reactions

Diverse guanine-rich RNAs and DNAs that fold to form guanine quadruplexes are known to form tight complexes with Fe(III) heme. We show here that a wide variety of such complexes robustly catalyze two-electron oxidations, transferring oxygen from hydrogen peroxide to thioanisole, indole, and styrene substrates. Use of (18)O-labeled hydrogen peroxide reveals the source of the oxygen transferred to form thioanisole sulfoxide and styrene oxide to be the activated ferryl moiety within these systems. Hammett analysis of the kinetics of thioanisole sulfoxide formation is unable to distinguish between a one-step, direct oxygen transfer and a two-step, oxygen rebound mechanism for this catalysis. Oxygen transfer to indole produces a range of products, including indigo and related dyes. Docking of heme onto a high-resolution structure of the G-quadruplex fold of Bcl-2 promoter DNA, which both binds heme and transfers oxygen, suggests a relatively open active site for this class of ribozymes and deoxyribozymes. That heme-dependent catalysis of oxygen transfer is a property of many RNAs and DNAs has ramifications for primordial evolution, enzyme design, cellular oxidative disease, and anticancer therapeutics.     

Carbon nanofiber electrode array for electrochemical detection of dopamine using fast scan cyclic voltammetry

A carbon nanofiber (CNF) electrode array was integrated with the Wireless Instantaneous Neurotransmitter Concentration Sensor System (WINCS) for the detection of dopamine using fast scan cyclic voltammetry (FSCV). Dopamine detection performance by CNF arrays was comparable to that of traditional carbon fiber microelectrodes (CFMs), demonstrating that CNF arrays can be utilized as an alternative carbon electrode for neurochemical monitoring.     

Observation of nonlinear self-trapping of broad beams in defocusing waveguide arrays

We demonstrate experimentally the localization of broad optical beams in periodic arrays of optical waveguides with defocusing nonlinearity. This observation in optics is linked to nonlinear self-trapping of Bose-Einstein-condensed atoms in stationary periodic potentials being associated with the generation of truncated nonlinear Bloch states, existing in the gaps of the linear transmission spectrum. We reveal that unlike gap solitons, these novel localized states can have an arbitrary width defined solely by the size of the input beam while independent of nonlinearity.     

A detailed surface analytical study of degradation processes in (meth)acrylic polymers

The present study investigates the degradation behavior of various high‐molecular‐weight acrylic polymers (50,000 < M_n/g mol^?1 < 100,000), namely poly(methyl methacrylate) (PMMA), poly(n‐butyl methacrylate) (PBMA), poly(n‐butyl acrylate) (PBA), and poly(lauryl methacrylate) (PLMA), under extreme environmental conditions. These polymers were synthesized via various polymerization techniques to create different end‐groups. The polymers chosen are readily applicable in the formulation of surface coatings and were degraded under conditions which replicate the harsh Australian climate, where surface coatings may reach temperatures of up to 95 °C and are exposed to broad‐spectrum UV radiation of up to 1 kW m^?2. The degradation behavior of the polymeric materials on their surface was followed via ATR‐IR spectroscopy, high resolution FTIR microscopy, and X‐ray photoelectron spectroscopy. The extent of the observed thermal and photo‐oxidation is directly related to the length of the ester side group, with the degradation susceptibility decreasing in the order of PLMA > PBMA/PBA > PMMA, with PMMA still stable even after 5 months exposure to the harshest condition used (UV light at 95 °C). The general degradation mechanism involves the loss of the ester side groups to form methacrylic acid followed by cross‐linking. The effect of the variable end groups was found to be minimal. The results from this study are in good agreement with previous studies of low‐molecular‐weight model polymers under identical conditions. © 2012 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2012     

A ribozyme and a catalytic DNA with peroxidase activity: active sites versus cofactor-binding sites

BACKGROUND: An 18-nucleotide DNA oligomer, PS2.M, derived using an in vitro selection method was previously reported to bind hemin (Fe(III)-protoporphyrinIX) with submicromolar affinity. The DNA-hemin complex exhibited DNA-enhanced peroxidative activity. PS2. M is guanine-rich and requires potassium ions to fold to its active conformation, consistent with its forming a guanine-quaduplex. In investigating the specific catalytic features of PS2.M we tested the peroxidative properties of its RNA version (rPS2.M) as well as that of an unrelated DNA guanine-quadruplex, OXY4. RESULTS: The hemin-binding affinity of rPS2.M was found to be 30-fold weaker than that of PS2.M. The UV-visible spectra and kinetics of enzymatic peroxidation of the RNA-hemin complex, however, were nearly identical to those of its DNA counterpart. Both displayed peroxidase activity substantially greater than those of heme proteins such as catalase and Fe(III)-myoglobin. Kinetic analysis suggested that PS2. M and rPS2.M catalyzed the breakdown of the hemin-hydrogen peroxide covalent complex to products. The hemin complex of folded OXY4 (which bound hemin as strongly as did rPS2.M) had a distinct absorption spectrum and only a minor peroxidase activity above the background level. CONCLUSIONS: The results indicated that it is possible for RNA and DNA of the same sequence to fold to form comparable cofactor-binding sites, and to show comparable catalytic behavior. The results further suggest that only a subset of cofactor-binding sites formed within folded nucleic acids might be able to function as active sites, by providing the appropriate chemical environments for catalysis.