Synthesis,spectroscopy, and X-ray crystal structures of copper(II) complexes of the tridentate ONS ligand formed by condensation of 4,4,4-trifluoro-1-(2-thienyl)-2,4-butanedione with S-benzyldithiocarbazate

A new tridentate ONS ligand, H₂L, has been synthesized by condensing thenoyltrifluoroacetone(4,4,4-trifluoro-1-(2-thienyl)-2,4butaneanedione) with S-benzyldithiocarbazate and its structure determined by X-ray diffraction. In the solid state, the Schiff base exists as the ketoamine-thioketo tautomer but in solution and in the presence of copper(II), it converts to the enol-thiol form and deprotonates to give copper(II) complexes of formula, [CuL] and [CuLL¹] (L = doubly deprotonated form of the ligand; L¹ = py, bipy or phen] which have been characterized by magnetic, spectroscopic, and X-ray diffraction studies. An X-ray crystallographic analysis shows that [CuL(py)] has a square-planar geometry with the ligand coordinated to the copper(II) center via the enolate oxygen, the azomethinic nitrogen and the thiolate sulfur, the fourth coordination position being occupied by pyridine. The [CuL(bipy)] complex is five-coordinate with a structure close to square-pyramidal in which the Schiff base acts as a doubly deprotonated tridentate ONS ligand and bipy is bidentate.     

A microenvironment-sensitive fluorescent pyrimidine ribonucleoside analogue: synthesis, enzymatic incorporation, and fluorescence detection of a DNA abasic site

Base-modified fluorescent ribonucleoside-analogue probes are valuable tools in monitoring RNA structure and function because they closely resemble the structure of natural nucleobases. Especially, 2-aminopurine, a highly environment-sensitive adenosine analogue, is the most extensively utilized fluorescent nucleoside analogue. However, only a few isosteric pyrimidine ribonucleoside analogues that are suitable for probing the structure and recognition properties of RNA molecules are available. Herein, we describe the synthesis and photophysical characterization of a small series of base-modified pyrimidine ribonucleoside analogues derived from tagging indole, N-methylindole, and benzofuran onto the 5-position of uracil. One of the analogues, based on a 5-(benzofuran-2-yl)pyrimidine core, shows emission in the visible region with a reasonable quantum yield and, importantly, displays excellent solvatochromism. The corresponding triphosphate substrate is effectively incorporated into oligoribonucleotides by T7 RNA polymerase to produce fluorescent oligoribonucleotide constructs. Steady-state and time-resolved spectroscopic studies with fluorescent oligoribonucleotide constructs demonstrate that the fluorescent ribonucleoside photophysically responds to subtle changes in its environment brought about by the interaction of the chromophore with neighboring bases. In particular, the emissive ribonucleoside, if incorporated into an oligoribonucleotide, positively reports the presence of a DNA abasic site with an appreciable enhancement in fluorescence intensity. The straightforward synthesis, amicability to enzymatic incorporation, and sensitivity to changes in the microenvironment highlight the potential of the benzofuran-conjugated pyrimidine ribonucleoside as an efficient fluorescent probe to investigate nucleic acid structure, dynamics, and recognition events.     

Effect of complementary small molecules on the properties of bicomponent hydrogel of riboflavin

Three new bicomponent hydrogels of riboflavin (R) with salicylic acid (S), dihydroxybenzoic acid (B) and acetoguanamine (D) in 1:1 molar ratio have been reported. FTIR and UV-vis spectra suggest formation of H-bonded complexes in 1:1 molar ratio of the components. The network consists of tape, bar and helical tubes for RB11, RS11 and RD11 systems, respectively. Reversible first order phase transition and invariant storage modulus (G') with angular frequency (ω) characterise the systems as forming thermoreversible hydrogels. The RD11 gel has the highest gel melting temperature and highest critical strain compared to other gels. WAXS study indicates different crystal structures for different gels. NMR spectra reveals higher shielding of protons in RD11 gel suggesting better π-stacking compared to RS11 and RB11 gels. RD11 gel shows two-fold enhancement of photoluminescence (PL) intensity with a substantial red shift of emission peak but RB11 and RS11 gels show PL-quenching. The gels exhibit a small decrease in lifetime and the PL property is very much temperature and pH dependent. So the complementary molecules have a pronounced effect on morphology, structure, stability and optical property of riboflavin gels.     

Self-assembly of neutral and cationic PdII organometallic molecular rectangles: synthesis, characterization and nitroaromatic sensing

Design and synthesis of three novel [2 + 2] self-assembled molecular rectangles 1-3via coordination driven self-assembly of predesigned Pd(ii) ligands is reported. 1,8-Diethynylanthracene was assembled with trans-Pd(PEt(3))(2)Cl(2) in the presence of CuCl catalyst to yield a neutral rectangle 1via Pd-C bond formation. Complex 1 represents the first example of a neutral molecular rectangle obtained via C-Pd coordination driven self-assembly. A new Pd(2)(II) organometallic building block with 180° bite-angle 1,4-bis[trans-(ethynyl)Pd(PEt(3))(2)(NO(3))]benzene (M(2)) containing ethynyl functionality was synthesized in reasonable yield by employing Sonagashira coupling reaction. Self-assembly of M(2) with two organic clip-type donors (L(2)-L(3)) afforded [2 + 2] self-assembled molecular rectangles 2 and 3, respectively [L(2) = 1,8-bis(4-pyridylethynyl)anthracene; L(3) = 1,3-bis(3-pyridyl)isophthalamide]. The macrocycles 1-3 were fully characterized by multinuclear NMR and ESI-MS spectroscopic techniques, and in case of 1 the structure was unambiguously determined by single crystal X-ray diffraction analysis. Incorporation of Pd-ethynyl bonds helped to make the assemblies π-electron rich and fluorescent in nature. Complexes 1-2 showed quenching of fluorescence intensity in solution in presence of nitroaromatics, which are the chemical signatures of many commercially available explosives.     

Cu(II)-catalyzed olefin migration and Prins cyclization: highly diastereoselective synthesis of substituted tetrahydropyrans

Metal-ligand complexes of Cu(OTf)(2) with an appropriate bisphosphine ligand have been shown to effectively catalyze the formation of substituted tetrahydropyrans via a sequential olefin migration and Prins-type cyclization. This methodology provides convenient access to a variety of functionalized tetrahydropyrans in excellent diastereoselectivities and good to excellent yields.     

Enantioselective total synthesis of (-)-zampanolide, a potent microtubule-stabilizing agent

An enantioselective total synthesis of zampanolide has been accomplished using a novel DDQ/Br?nsted acid promoted cyclization as the key reaction. The synthesis features cross-metathesis to construct the trisubstituted olefin and a ring-closing metathesis to form the macrolactone. The final N-acyl aminal formation was stereoselectively accomplished by an organocatalytic reaction.     

Selective colorimetric sensing of mercury(II) using turn off-turn on mechanism from riboflavin stabilized silver nanoparticles in aqueous medium

A simple Hg(2+) sensor has been developed using the vitamin B2 (riboflavin) stabilized Ag nanoparticle via a "turn off"-"turn on" mechanism; both the colour and photoluminescence properties of the riboflavin solution are used as sensitizing tools showing a sensitivity up to 5 nM Hg(2+) concentration.     

Concomitant synthesis of polyaniline and highly branched gold nanoparticles in the presence of DNA

The reduction of chloroauric acid using aniline adsorbed on DNA produces highly branched dendritic gold nanoparticles with concomitant formation of polyaniline (PANI) in contrast to the formation of spherical Au nanoparticles in the absence of DNA. The conformation of DNA remains intact in the process as evident from circular dichroism (CD) spectra. The UV-Vis spectrum exhibits a broad absorption peak at 520-900 nm, for a combined effect of the gold surface plasmon and π band to localized polaron band transition of DNA-doped PANI. Both the dendritic Au-PANI-DNA and the spherical Au-PANI systems emit two peaks for excitation with radiation of 300 nm and the intensity ratio of the emission and FRET peak is higher in the dendritic Au-PANI than that in the spherical Au-PANI system. The dc-conductivity values of spherical Au-PANI and dendritic Au-PANI-DNA systems are 1.2×10(-10) and 1.7×10(-8) S/cm at 30°C, respectively.     

Chiral pyridin-3-ones and pyridines: syntheses of enantiopure 2,4-disubstituted 6-hydroxy-1,6-dihydro-2H-pyridin-3-ones, 2,3-disubstituted 4-iodopyridines, and enantiopure 2,3-disubstituted 4-pyridinemethanols

The development of an innovative method to access enantiopure 2,4-disubstituted 6-hydroxy-1,6-dihydro-2H-pyridin-3-ones starting from D-glucal via the aza-Achmatowicz transformation has been described. These highly functionalized pyridin-3-ones have been utilized for the synthesis of contiguously substituted pyridines through a rapid and efficient Et(3)N/Ac(2)O promoted cyclo-elimination, aromatization cascade, allowing the facile assembly of important pyridine-based building blocks like 2-substituted 3-acetoxy-4-iodopyridines and enantiopure 2-substituted 3-acetoxy-4-pyridinemethanols possessing benzylic stereogenic centers, whose synthesis otherwise would be tedious. The utilization of commercially available sugars as starting materials, mild reaction conditions, catalytic transfer hydrogen (CTH) of α-furfuryl azide derivatives, transfer of chiral aryl/alkyl methanols from enulosides to pyridin-3-ones and pyridines, high yields, and short reaction times are key features of this method. The utility of the method has been further exemplified by demonstrating the usage of the 2-substituted 3-acetoxy-4-iodopyridine for the construction of biologically significant molecules like 2,7-disubstituted furo[2,3-c]pyridines and 7,7'-disubstituted 2,2'-bifuro[2,3-c]pyridines.