Discovery of novel inhibitors for <Emphasis Type="Italic">Leishmania</Emphasis> nucleoside diphosphatase kinase (NDK) based on its structural and functional characterization

Nucleoside diphosphate kinases (NDKs) are ubiquitous enzymes that catalyze the transfer of the γ-phosphate moiety from an NTP donor to an NDP acceptor, crucial for maintaining the cellular level of nucleoside triphosphates (NTPs). The inability of trypanosomatids to synthesize purines de novo and their dependence on the salvage pathway makes NDK an attractive target to develop drugs for the diseases they cause. Here we report the discovery of novel inhibitors for Leishmania NDK based on the structural and functional characterization of purified recombinant NDK from Leishmania amazonensis. Recombinant LaNDK possesses auto-phosphorylation, phosphotransferase and kinase activities with Histidine 117 playing an essential role. LaNDK crystals were grown by hanging drop vapour diffusion method in a solution containing 18% PEG-MME 500, 100 mM Bis-Tris propane pH 6.0 and 50 mM MgCl₂. It belongs to the hexagonal space group P6₃22 with unit cell parameters a?=?b?=?115.18, c?=?62.18 Å and α?=?β?=?90°, γ?=?120°. The structure solved by molecular replacement methods was refined to crystallographic R-factor and R_free values of 22.54 and 26.52%, respectively. Molecular docking and dynamics simulation-based virtual screening identified putative binding compounds. Protein inhibition studies of selected hits identified five inhibitors effective at micromolar concentrations. One of the compounds showed ~45% inhibition of Leishmania promastigotes proliferation. Analysis of inhibitor-NDK complexes reveals the mode of their binding, facilitating design of new compounds for optimization of activities as drugs against leishmaniasis.     

Estimation of distribution coefficient of polonium in geological matrices around uranium mining site

In case of ground (groundwater) contamination or contaminants release from the disposal modules (facilities) to the geo-environment, the fate of contaminant transport is mainly governed by the parameter called distribution (partition) coefficient, K _d. It is a measure of sorption of contaminants to soils. For that the sorption of polonium in soil were carried out using laboratory batch method in different soil samples collected from different places around Turamdih uranium mining site. The kinetics of polonium sorption were also carried out at different time intervals which clearly indicates that sorption equilibrium for polonium achieved at around 72 h. The K _d for polonium varies from 1,443 to 7,501.3 L/kg in soil samples. Chemical characterization of soil and ground water samples were carried out to know the effect of various chemical parameters with distribution coefficient of polonium.     

Non-surface activity and micellization behavior of cationic amphiphilic block copolymer synthesized by reversible addition-fragmentation chain transfer process

Cationic amphiphilic diblock copolymers of poly(n-butylacrylate)-b-poly(3-(methacryloylamino)propyl)trimethylammonium chloride) (PBA-b-PMAPTAC) with various hydrophobic and hydrophilic chain lengths were synthesized by a reversible addition-fragmentation chain transfer (RAFT) process. Their molecular characteristics such as surface activity/nonactivity were investigated by surface tension measurements and foam formation observation. Their micelle formation behavior and micelle structure were investigated by fluorescence probe technique, static and dynamic light scattering (SLS and DLS), etc., as a function of hydrophilic and hydrophobic chain lengths. The block copolymers were found to be non-surface active because the surface tension of the aqueous solutions did not change with increasing polymer concentration. Critical micelle concentration (cmc) of the polymers could be determined by fluorescence and SLS measurements, which means that these polymers form micelles in bulk solution, although they were non-surface active. Above the cmc, the large blue shift of the emission maximum of N-phenyl-1-naphthylamine (NPN) probe and the low micropolarity value of the pyrene probe in polymer solution indicate the core of the micelle is nonpolar in nature. Also, the high value of the relative intensity of the NPN probe and the fluorescence anisotropy of the 1,6-diphenyl-1,3,5-hexatriene (DPH) probe indicated that the core of the micelle is highly viscous in nature. DLS was used to measure the average hydrodynamic radii and size distribution of the copolymer micelles. The copolymer with the longest PBA block had the poorest water solubility and consequently formed micelles with larger size while having a lower cmc. The "non-surface activity" was confirmed for cationic amphiphilic diblock copolymers in addition to anionic ones studied previously, indicating the universality of non-surface activity nature.     

Testing for Constant Nonparametric Effects in General Semiparametric Regression Models with Interactions

We consider the problem of testing for a constant nonparametric effect in a general semiparametric regression model when there is a potential for interaction between the parametrically and nonparametrically modeled variables. The work was originally motivated by a unique testing problem in genetic epidemiology (Chatterjee et al., 2006) that involved a typical generalized linear model but with an additional term reminiscent of the Tukey 1-degree-of-freedom formulation, and their interest was in testing for main effects of the genetic variables, while gaining statistical power by allowing for a possible interaction between genes and the environment. Later work (Maity et al., 2009) involved the possibility of modeling the environmental variable nonparametrically, but they focused on whether there was a parametric main effect for the genetic variables. In this paper, we consider the complementary problem, where the interest is in testing for the main effect of the nonparametrically modeled environmental variable. We derive a generalized likelihood ratio test for this hypothesis, show how to implement it, and provide evidence that our method can improve statistical power when compared to standard partially linear models with main effects only. We use the method for the primary purpose of analyzing data from a case-control study of colorectal adenoma.     

Organogold clusters protected by phenylacetylene

A new class of monolayer-protected Au clusters with Au-C covalent bonds (organogold clusters) was synthesized by ligating phenylacetylene (PhC≡CH) to PVP-stabilized Au clusters. Matrix-assisted laser desorption ionization mass spectrometry revealed for the first time a series of stable compositions of the organogold (Au:C(2)Ph) clusters.     

The continuous-flow cycloaddition of azomethine ylides to carbon nanotubes

This communication demonstrates a straightforward continuous-flow method for efficient exohedral functionalisation of carbon nanotubes which affords soluble samples in a much shorter time over conventional batch processing.     

The warm inflationary universe

In the past decade, the importance of dissipation and fluctuation to inflationary dynamics has been realized and has led to a new picture of inflation called warm inflation. Although these phenomena are common to condensed matter systems, for inflation models their importance has only recently started to be appreciated. The article describes the motivation for these phenomena during inflation and then examines their origins from first principles quantum field theory treatments of inflation models. Cosmology today is a data intensive field and this is driving theory to greater precision and predictability. This opens the possibility to consider tests for detecting observational signatures of dissipative processes, which will be discussed. In addition, it will be discussed how particle physics and cosmology are now working in tandem to push the boundaries of our knowledge about fundamental physics.     

A novel far-boundary condition for the finite element analysis of infinite reservoir

The present paper deals with the finite element analysis of the reservoir of infinite extent using a novel far-boundary condition. The equations of motion are expressed in terms of the pressure only assuming water as inviscid and incompressible. The truncation boundary condition is developed numerically from the classical wave equation. Comparative studies show that the proposed far-boundary condition is numerically efficient and accurate over the existing ones, available in the literature. The effect of the geometry of the reservoir bed and the adjacent structure on the development hydrodynamic pressure has been studied. The results show that the geometry of the reservoir bed and as well as the adjacent structure has considerable effect on the development of hydrodynamic pressure at the dam–reservoir interface.     

A novel study of charged carbon clusters using a tandem Van de Graaff accelerator

A conventional tandem Van de Graaff accelerator is used to produce charged carbon cluster beams. The unique capability of the method for studying highly charged clusters unaccessible to other methods of producing cluster beams is demonstrated.     

Fission track annealing and age determination of hornblende

Hornblende which occurs in igneous and metamorphic rocks is well suited for age determination by the fission track method. The tracks which are readily etched in hydrofluoric acid are annealed in 1 hr at 530° C. Extrapolation of the experimentally determined temperatures suggest that a temperature of 200° C for one m.y. will erase all the tracks present before the heating. Fission track ages of hornblende agree with the main orogenic metamorphic cycles.