Probing FtsZ and tubulin with C8-substituted GTP analogs reveals differences in their nucleotide binding sites

The cytoskeletal proteins, FtsZ and tubulin, play a pivotal role in prokaryotic cell division and eukaryotic chromosome segregation, respectively. Selective inhibitors of the GTP-dependent polymerization of FtsZ could constitute a new class of antibiotics, while several inhibitors of tubulin are widely used in antiproliferative therapy. In this work, we set out to identify selective inhibitors of FtsZ based on the structure of its natural ligand, GTP. We found that GTP analogs with small hydrophobic substituents at C8 of the nucleobase efficiently inhibit FtsZ polymerization, whereas they have an opposite effect on the polymerization of tubulin. The inhibitory activity of the GTP analogs on FtsZ polymerization allowed us to crystallize FtsZ in complex with C8-morpholino-GTP, revealing the binding mode of a GTP derivative containing a nonmodified triphosphate chain.     

Ni+ reactions with aminoacrylonitrile, a species of potential astrochemical relevance

The reaction of aminoacrylonitrile, a species of astrochemical interest, with Ni(+)((2)D(5/2)) was investigated by means of mass spectrometry techniques and density functional theory calculations. The dominant fragmentations in the MIKE spectrum correspond to the loss of [C2,N,H3], HCN, and NH3, the loss of H2 being very minor. The structure and bonding of the different aminoacrylonitrile-Ni(+) complexes were investigated at the B3LYP/6-311G(d,p) level of theory. The same approach was employed in our survey of the corresponding potential energy surface. This survey indicates that the [C2,N,H3] neutral product can be formed either as ketenimine (CH2CNH) or acetonitrile. The formation of the latter is significantly more exothermic but involves slightly higher activation barriers; so very likely, both isomers are produced along the reaction process. The lost of HNC is not competitive with the loss of HCN, because when the former is formed the products lie higher in energy and the corresponding mechanisms involve energy barriers above the entrance channel. The loss of NH3 is associated with the formation of a complex between cyanoacetylene, HCCCN, which is very abundant in the interstellar media, and Ni(+).     

High-pressure investigation of Li2MnSiO4 and Li2CoSiO4 electrode materials for lithium-ion batteries

In this work, the high-pressure behavior of Pmn2(1)-Li(2)MnSiO(4) and Pbn2(1)-Li(2)CoSiO(4) is followed by in situ X-ray diffraction at room temperature. Bulk moduli are 81 and 95 GPa for Pmn2(1)-Li(2)MnSiO(4) and Pbn2(1)-Li(2)CoSiO(4), respectively. Regardless of the moderate values of the bulk moduli, there is no evidence of any phase transformation up to a pressure of 15 GPa. Pmn2(1)-Li(2)MnSiO(4) shows an unusual expansion of the a lattice parameter upon compression. A density functional theory investigation yields lattice parameter variations and bulk moduli in good agreement with experiments. The calculated data indicate that expansion of the a lattice parameter is inherent to the crystal structure and independent of the nature of the transition-metal atom (M). The absence of pressure-driven phase transformation is likely associated with the incapability of the Li(2)MSiO(4) composition to adopt denser structures while avoiding large electrostatic repulsions.     

Influence of thiazole regioisomerism on second-order nonlinear optical chromophores

Two series of matched and mismatched donor–thiazole–acceptor chromophores have been synthesized to disclose the role that the orientation of the thiazole ring plays on their second-order nonlinear optical (NLO) properties. Whereas previous theoretical studies predict that the matched systems show markedly higher NLO responses, our experimental results do not parallel this trend, showing differences between regioisomers much lower than those predicted.     

Co2+ binding cysteine and selenocysteine: a DFT study

In this paper we report structural and energetic data for cysteine and selenocysteine in the gas phase and the effect of Co(2+) complexation on their properties. Different conformers are analyzed at the DFT/B3LYP level of both bound and unbound species. Geometries, vibrational frequencies, and natural population analysis are reported and used to understand the activity of these species. In particular, we have focused our attention on the role of sulfur and selenium in the metal binding process and on the resulting deprotonation of the thiol and seleniol functions. From the present calculations we are able to explain, both from electronic structure and thermochemical point of views, a metal-induced thiol deprotonation as observed in gas-phase experiments. A similar process is expected in the case of selenocysteine. In fact, cobalt was found to have a preferential affinity with respect to thiolate and selenolate functions. This can be related to the observation that only S and Se are able-in thiolate and selenolate states-to make a partial charge transfer to the cobalt thus forming very stable complexes. Globally, very similar results are found when substituting S with Se, and a very small difference in cobalt binding affinity is found, thus justifying the use of this substitution in X-ray absorption experiments done on biomolecules containing cysteine metal binding pockets.     

NMR determination of the bioactive conformation of peloruside A bound to microtubules

We report here on the determination of the conformation of Peloruside A bound to biochemically stabilized microtubules, by using TR-NOESY NMR experiments. As a previous step, the conformation of the free molecule in water solution has also been deduced. Despite the large size of the ring, Peloruside A mainly adopts two conformations in water solution. A conformational selection process takes place, and the microtubules-bound conformer is one of those present in the water solution, different than that existing in chloroform medium. A model of the binding mode to tubulin has also been proposed, by docking the bioactive conformation of peloruside, which involves the alpha-tubulin monomer, in contrast with taxol, which binds to the beta-monomer.     

Creatinine determination in urine samples by batchwise kinetic procedure and flow injection analysis using the Jaffé reaction: chemometric study

The classical Jaffé reaction for the determination of creatinine in urine samples is tested. A comparative study of the main analytical characteristics focussed to minimize the bias error and improve the precision, for the batchwise and flow injection (FI) methods is realized. Also, the effect of the albumin concentration in the determination of creatinine has been studied. Different analytical signals were studied. Absorbance increments at different times permit to estimate the creatinine concentration free from bias error in urine by the batchwise method using the calibration graph obtained with creatinine standards and no measurement of the blank solution is needed. The lineal interval was 0.92–50 mg l⁻¹ and seven samples can be processed per hour by an operator. No previous treatment of the urine sample is necessary. The FI method provides also good results. The lineal interval was 30–100 mg l⁻¹ and the sample rate was around 20 samples per hour. If increased albumin levels are detected in the urine, standard addition method or the calibration graphs with standards in presence of albumin are needed in order to obtain accurate results when FI method is employed. The obtained accuracy of the both methods allows its application as diagnostic tool to establish the urinary creatinine levels.     

Cu+ chemical ionization for analysis of hydrocarbons by gas chromatography/mass spectrometry

The use of copper ions for chemical ionization (CI) coupled with gas chromatography/mass spectrometry (GC/MS) of hydrocarbons is reported. Cu⁺?CI was performed in a high-pressure, fast atom bombardment ion source coupled with both a gas chromatograph and a mass spectrometer. The suitability of the Cu⁺?CI method is illustrated by the analysis of pure alkylbenzenes, alkylthiophenes, octenes, and by the analysis of a light mixture of aromatic hydrocarbons. The Cu⁺?CI/GC mass spectra display an abundant [M+⁶³Cu]⁺ ion, together with fragmentations, that are of structural interest. The detection limit for isobutylbenzene, taken as model compound, is 100 times lower than that for electron ionization.