Beta-turn modified gramicidin S analogues containing arylated sugar amino acids display antimicrobial and hemolytic activity comparable to the natural product

This paper describes the design and synthesis of gramicidin S (GS) analogues 10a-c containing arylated sugar amino acids (SAAs) as a replacement of one of the two (D)Phe-Pro beta-turn regions. The cyclic, amphiphilic peptides adopt a beta-sheet conformation featuring an unusual reverse turn induced by the SAAs. The altered turn region induces a slight distortion of the antiparallel beta-sheet, as compared to GS; the overall geometry however closely resembles that of the nonarylated GS analogue 1. GS analogues 10a-c proved to be as active as the parent GS itself as antibacterial agents and are equally efficient in lysing red blood cells. These properties are in sharp contrast to the diminished biological activity displayed by 1. We conclude that the presence of aromaticity in the turn regions of GS derivatives is required for biological activity, whereas the native conformation of the beta-hairpin is not. Our findings may guide future research toward efficient and nonhemolytic GS analogues for combating bacterial infections.     

A new class of versatile chiral-bridged atropisomeric diphosphine ligands: remarkably efficient ligand syntheses and their applications in highly enantioselective hydrogenation reactions

A series of chiral diphosphine ligands denoted as PQ-Phos was prepared by atropdiastereoselective Ullmann coupling and ring-closure reactions. The Ullmann coupling reaction of the biaryl diphosphine dioxides is featured by highly efficient central-to-axial chirality transfer with diastereomeric excess >99%. This substrate-directed diastereomeric biaryl coupling reaction is unprecedented for the preparation of chiral diphosphine dioxides, and our method precludes the tedious resolution procedures usually required for preparing enantiomerically pure diphosphine ligands. The effect of chiral recognition was also revealed in a relevant asymmetric ring-closure reaction. The chiral tether bridging the two aryl units creates a conformationally rigid scaffold essential for enantiofacial differentiation; fine-tuning of the ligand scaffold (e.g., dihedral angles) can be achieved by varying the chain length of the chiral tether. The enantiomerically pure Ru- and Ir-PQ-Phos complexes have been prepared and applied to the catalytic enantioselective hydrogenations of alpha- and beta-ketoesters (C=O bond reduction), 2-(6'-methoxy-2'-naphthyl)propenoic acid, alkyl-substituted beta-dehydroamino acids (C=C bond reduction), and N-heteroaromatic compounds (C=N bond reduction). An excellent level of enantioselection (up to 99.9% ee) has been attained for the catalytic reactions. In addition, the significant ligand dihedral angle effects on the Ir-catalyzed asymmetric hydrogenation of N-heteroaromatic compounds were also revealed.     

Large area liquid crystal monodomain field-effect transistors

Butyl, hexyl, and decyl derivatives of the liquid-crystalline organic semiconductor 5,5' '-bis(5-alkyl-2-thienylethynyl)-2,2':5',2' '-terthiophene were synthesized and studied with respect to their structural, optical, and electrical properties. By means of an optimized thermal annealing scheme the hexyl and decyl compounds could be processed into self-assembled monodomain films of up to 150 mm in diameter. These were investigated with X-ray diffractometry, which revealed a clearly single-crystalline monoclinic morphology with lamellae parallel to the substrate. Within the lamellae the molecules were found to arrange with a tilt of about 50 degrees with the rubbing direction of the polyimide alignment layer. The resulting, close side-to-side packing was confirmed by measurements of the UV/vis absorption, which showed a dichroic ratio of 19 and indicated H-aggregation. AFM analyses revealed self-affinity in the surface roughness of the monodomain. The compounds showed bipolar charge transport in TOF measurements, with hole mobilities reaching up to 0.02 cm(2)/Vs and maximum electron mobilities around 0.002 cm(2)/Vs. The hexyl derivative was processed into large-area monodomain top-gate field-effect transistors, which were stable for months and showed anisotropic hole mobilities of up to 0.02 cm(2)/Vs. Compared to multidomain bottom-gate transistors the monodomain formation allowed for a mobility increase by 1 order of magnitude.     

High yield syntheses of stable, singly bonded Pd2(6+) compounds

A general method for the syntheses of dipalladium compounds having a singly bonded Pd26+ core and the formula R,S-cis-Pd2(C6H4PPh2)2(O2CR)2Cl2 is described. When the alkyl group in the carboxylate ligands is an electron donating group, the compounds are stable and the yields high. The Pd-Pd distances for the diamagnetic compounds with R = CF3 and CMe3 are 2.5434(4) and 2.5241(9) A, respectively. Calculations at the DFT level suggest that the electronic configuration is sigma2pi4delta2delta*2pi*4. These represent rare examples of palladium(III) compounds.     

Tandem mass spectrometry of intact GroEL-substrate complexes reveals substrate-specific conformational changes in the trans ring

It has been suggested that the bacterial GroEL chaperonin accommodates only one substrate at any given time, due to conformational changes to both the cis and trans ring that are induced upon substrate binding. Using electrospray ionization mass spectrometry, we show that indeed GroEL binds only one molecule of the model substrate Rubisco. In contrast, the capsid protein of bacteriophage T4, a natural GroEL substrate, can occupy both rings simultaneously. As these substrates are of similar size, the data indicate that each substrate induces distinct conformational changes in the GroEL chaperonin. The distinctive binding behavior of Rubisco and the capsid protein was further investigated using tandem mass spectrometry on the intact 800-914 kDa GroEL-substrate complexes. Our data suggest that even in the gas phase the substrates remain bound inside the GroEL cavity. The analysis revealed further that binding of Rubisco to the GroEL oligomer stabilizes the chaperonin complex significantly, whereas binding of one capsid protein did not have the same effect. However, addition of a second capsid protein molecule to GroEL resulted in a similar stabilizing effect to that obtained after the binding of a single Rubisco. On the basis of the stoichiometry of the GroEL chaperonin-substrate complex and the dissociation behavior of the two different substrates, we hypothesize that the binding of a single capsid polypeptide does not induce significant conformational changes in the GroEL trans ring, and hence the unoccupied GroEL ring remains accessible for a second capsid molecule.     

A new eudesmane derivative and a new fatty acid ester from Sambucus williamsii

1,4,13-Trihydroxy-eudesm-11(12)-ene, a new eudesmane derivative (3), (9E)-8,11,12-trihydroxyoctadecenoic acid methyl ester, a new fatty acid ester (2) and tianshic acid (1) were obtained from the stems of Sambucus williamsii. Their structures were elucidated by physiochemical properties and spectroscopic analysis. Both compounds 1 and 2 showed stimulating effects on alkaline phosphatase activity of the osteoblastic UMR106 cell about 1.5 fold at 30 mumol/l while they had no effects on cell proliferation.     

O2 chemistry of dicopper complexes with alkyltriamine ligands. Comparing synergistic effects on O2 binding

Two dicopper(I) complexes containing tertiary N-methylated hexaaza ligands which impose different steric constraints to the Cu ions have been synthesized, and their reactivity toward O2 has been compared with a mononuclear related system, highlighting the importance of cooperative effects between the metal centers in O2 activation.     

Strong electronic communication by direct metal-metal interaction in molecules with halide-bridged dimolybdenum pairs

Reactions of [cis-Mo2(DAniF)2(NCCH3)4](BF4)2, DAniF = N,N'-di-p-anisylformamidinate, with an excess of anhydrous Bu(n)4NX (X = Cl, Br, I), produced the halide-bridged tetranuclear clusters, [cis-Mo2(DAniF)2]2(mu-X)4, X = Cl (1), Br (2), and I (3). All three compounds show two reversible one-electron oxidation processes with potential separations (DeltaE(1/2)) between the two oxidation processes of 540, 499, and 440 mV, respectively. These DeltaE(1/2) values show that the strength of the electronic coupling between the dimetal units decreases as the Mo2...Mo2 distance increases from 1 to 2, and then to 3. The structures, EPR spectra, and near-IR (NIR) spectra of the corresponding mixed-valence species (1-PF6, 2-PF6, and 3-PF6) indicate that the clusters are electronically delocalized. Calculations at the DFT level indicate that the strong electronic communication is principally due to a direct overlap between the delta orbitals from the adjacent dimetal units.     

Dimolybdenum-containing molecular triangles and squares with diamidate linkers: structural diversity and complexity

By employing cis-Mo2(DAniF)2(2+) (DAniF = N,N'-di(p-anisyl)formamidinate) as the vertex building block and terephthaloyldiamidate as the linker, four dimolybdenum-containing cyclic oligomers have been synthesized and structurally characterized. In these compounds, described by the general formula [cis-Mo2(DAniF)2((ArNOC)2C6H4)2]n, n = 3 and 4, the geometry and composition of the products are affected by the identity of the aromatic groups of the linker. When Ar = phenyl, n = 3 (1a and 1b); however, n = 4 for Ar = p-trifluoromethylphenyl (2) and when Ar = m-trifluoromethylphenyl (3). All these compounds have a central cavity, shaped by the diamidate linker, that is capable of serving as host to guest molecules in a selective manner. For compounds 2 and 3, self-assembly that takes place in the crystalline state entails intermolecular C-H...F-C interactions. Such interactions generate a one-dimensional network with a tunnel cross section of 10 x 10 A(2) in 2, whereas in 3, they result in a cage in which two THF molecules are encapsulated. The F...H distances vary in a broad range from 2.38 to 2.70 A.     

One-step template-directed synthesis of a macrocyclic tetraarylporphyrin hexamer based on supramolecular interactions with a C3-symmetric tetraarylporphyrin trimer

Taking into consideration the model geometry of the macrocyclic hexaporphyrin 1 as a host molecule, the structure of a benzene-centered porphyrin trimer bearing pyridine rings at the apical positions has been designed with the aim to use the latter as a template for the synthesis of its own host. Indeed, in the presence of the porphyrin trimer 5, the yield of the cyclization of a linear porphyrin hexamer, as a precursor of 1, could be improved from 8 to 30% (variable yield) to 50% (reproducible yield). Even the condensation of equimolecular amounts of porphyrin monomers 20b and 21b in the presence of 5 led--probably through a loose preorganized complex between the latter and the Zn(II) chelate 20b--to the formation of 1 in only five steps from 19, as compared with 13 steps of the synthesis via linear porphyrin hexamer in the absence of template. As evidenced by 1H NMR spectroscopic analysis of the supramolecular complex between 5 and an analogue of 1b in which all H-atoms at the pyrrole rings have been replaced by deuterium, in the presence of unlabeled 1b, a rapid dissociation and recombination of the host and guest molecules forming the supramolecular complex takes place even at low temperature (-40 degrees C). As at 55 degrees C all six Zn(II) porphyrinate rings of the complex 1b + 5 become magnetically equivalent in the 500 MHz 1H NMR time scale, approximate kinetic data for the ligand exchange process could be obtained.