Solid-phase oligodeoxynucleotide synthesis: a two-step cycle using peroxy anion deprotection

A novel solid-phase phosphoramidite based oligodeoxynucleotide two-step synthesis method has been developed. Keys to this method are replacement of the 5'-dimethoxytrityl blocking group with an aryloxycarbonyl and the use of N-dimethoxytrityl protection for the exocyclic amines of adenine and cytosine. With these modifications, coupling of each 2'-deoxynucleoside 3'-phosphoramidite to the growing oligodeoxynucleotide on the solid support can be followed by treatment with an aqueous mixture of peroxy anions buffered at pH 9.6. This reagent effectively removes the carbonate protecting group and simultaneously oxidizes the phosphite internucleotide linkage. As a consequence a new two-step synthesis cycle is possible. Oligodeoxynucleotides synthesized using this approach are identical to authentic samples when tested by a variety of analytical techniques.     

Stopped‐flow Spectrophotometric Study on the Reaction between Carbon Dioxide and [Co(NH3)4(H2O)2]3+ Ion in Aqueous Solution

Kinetics of the reaction of [tetraamminediaquacobalt(III)] perchlorate ion with carbon dioxide in aqueous solution was studied at various temperatures (5–25 °C), variable concentration of CO₂ (0.005M; 0.01M; 0.015M) and over the pH range 6.04–8.15 at a fixed ionic strength of solution (1 M NaClO₄). Investigations were carried out using stopped‐flow spectrophotometry in the range of 300 – 700 nm. The results enabled determination of the number of steps of the reaction studied. Based on the kinetic equations, rate constants were determined for each step. Finally, the mechanism of carbon dioxide uptake by [tetraamminediaquacobalt(III)] perchlorate ion was proposed and discussed.     

A new interpretation of chlorine leaving group kinetic isotope effects; a theoretical approach

The chlorine leaving group kinetic isotope effects (KIEs) for the S(N)2 reactions between methyl chloride and a wide range of anionic, neutral, and radical anion nucleophiles were calculated in the gas phase and, in several cases, using a continuum solvent model. In contrast to the expected linear dependence of the chlorine KIEs on the C(alpha)-Cl bond order in the transition state, the KIEs fell in a very small range (1.0056-1.0091), even though the C(alpha)-Cl transition state bond orders varied widely from approximately 0.32 to 0.78, a range from reactant-like to very product-like. This renders chlorine KIEs, and possibly other leaving-group KIEs, less useful for studies of reaction mechanisms than commonly assumed. A partial explanation for this unexpected relationship between the C(alpha)-Cl transition state bond order and the magnitude of the chlorine KIE is presented.     

A three-component reaction for diversity-oriented synthesis of polysubstituted piperidines: solution and solid-phase optimization of the first tandem aza[4+2]/allylboration

This article describes the design and optimization of a simple three-component aza[4+2]/allylboration reaction to access polysubstituted alpha-hydroxyalkyl piperidines in a highly diastereocontrolled fashion from maleimides, 4-boronohydrazonodienes, and aldehydes. The aldehyde component does not interfere with the first aza[4+2] step, and it was found that this tandem reaction provides better yields of piperidine products 5 when carried out in one-pot. The required 4-borono-hydrazonodienes 1 are synthesized efficiently from the condensation of 3-boronoacrolein pinacol ester (4) with hydrazines. Overall, the three-component process using N-substituted maleimides as dienophiles produces four stereogenic centers and is quite general. It tolerates the use of a wide variety of aldehydes and hydrazine precursors with different electronic and steric characteristics. By allowing such a wide substrate scope and up to four elements of diversity, this reaction process is particularly well adapted towards applications in diversity-oriented synthesis of polysubstituted piperidine derivatives. The suitability of the aza[4+2]/allylboration reaction for use in solid-phase chemistry was also demonstrated using a N-arylmaleidobenzoic acid functionalized resin. This novel multicomponent reaction thus offers a high level of stereocontrol and versatility in the preparation of densely functionalized nitrogen heterocycles.     

A benzopyran derivative substituted at position 3

In (E)‐3‐{[(di­phenoxy­phospho­ryl)­methyl­hydrazono]­methyl}‐4H‐1‐benzo­pyran‐4‐one, C₂₃H₁₉N₂O₅P, the benzo­pyran–methyl­hydrazone moiety is planar and the two phenoxy phenyl rings are inclined at angles of 21.29 (6) and 89.33 (5)°. Weak C—H?O and C—H?N intramolecular interactions exert some influence on the planarity and orientation of that moiety.     

Three-step extraction procedure for determination of heavy metals availability to vegetables

A three-step sequential extraction procedure was used to determine the concentration of heavy metal speciation forms in soil. The procedure allows one to identify the pool of heavy metals that can be potentially mobilised under changes in soil pH value or redox potential. It has been shown that similar portions of heavy metals are present in reducible, oxidisable and residual fractions. It was found that soil chemical properties significantly affected the distribution of heavy metals among different fractions and their uptake by vegetables. Cadmium was a dominant element which occurred in the exchangeable fraction—the most bioavailable and potentially toxic.     

Nitroaldol-reaction of aldehydes in the presence of non-activated Mg:Al 2:1 hydrotalcite; a possible new mechanism for the formation of 2-aryl-1,3-dinitropropanes

Commercially available, non-activated 2:1 Mg:Al hydrotalcite catalyzes the nitroaldol reaction between a variety of aromatic and aliphatic aldehydes and simple nitroalkanes such as nitromethane and nitroethane. A new mechanism is proposed for the formation of the 1,3-dinitropropanes. The threo/erythro diastereoselectivity of the nitroethane-adducts was determined by ¹H NMR spectroscopy and was found to range from 50:50 to 70:30. The substituents of the aromatic aldehydes influenced the isomer ratio.     

Proton translocation in monomolecular Langmuir-Blodgett films including 2-naphthol and 1,4-anthraquinone derivatives

The scope of the present work is the investigation of proton transport through monomolecular Langmuir-Blodgett (LB) films. The films were formed from amphiphilic molecules: 2-naphtholo-6-sulfonamide of dodecylamine (N) and 1,4-anthraquinono-2 sulfonamide of dodecylamine (A). The 2-naphthol derivative can act as a proton donor due to excited state proton transfer (ESPT) and the 1,4-anthraquinone group can play the role of proton acceptor because of protonation of the reduced form if it is present. Absorption and emission spectra of LB films containing N and A were registered and separated into component bands. Individual absorption and emission peaks observed were assigned to given forms of chromophores. The behavior of different component bands reflects the state of anthraquinone dependent on proton concentration. A correlation of rate and efficiency of ESPT, with changes of the spectra of A, may be expected to yield information concerning the transport of protons from N to A. The influence of the donor-acceptor distance, sample humidity, film arrangement and the presence of protonophores (Gramicidin A) on proton transfer is studied. Our results indicate that the proton can be transported through the film but its concentration vanishes at the distance greater than 30 A. The efficiency of proton transfer depends strongly on water content, film structure and the presence of ion channels.     

Following protein kinase acivity by electrochemical means and contact angle measurements

The electrochemical analysis of the protein kinase, casein kinase, is accomplished by the voltammetric response of Ag(+) ions associated with the phosphorylated product; the sensing surface is regenerated by the cleavage of the phosphorylated product with alkaline phosphatase, and the phosphorylation/de-phosphorylation processes are monitored by XPS and contact angle measurements.     

Electrochemically induced mineralization of organics by molecular oxygen on boron-doped diamond electrode

The complete mineralization of organic pollutants present in wastewater is usually achieved via thermally activated oxygen/air. This process occurs at high temperatures and pressures (300 °C, 200 atm) and often gives small amount of acetic acid as a final product. In this work, we demonstrate using acetic acid as a model compound that organic molecules can be activated electrochemically such that they react at room temperature with oxygen, resulting in mineralization of even acetic acid present in 1 M HClO₄ supporting electrolyte. This electrochemically induced activation occurs during anodic polarization of boron-doped diamond electrodes (BDD) in air/oxygen-saturated solutions. The direct evidence for this process was found during electro-oxidation of acetic acid saturated with isotopically labelled ¹⁸O₂ resulting in evolution of C¹⁸O₂ and C¹⁶O¹⁸O. We suggest that the mechanism of activation on BDD is initiated by hydroxyl radicals formed on the electrode surface.