C-Furyl glycosides, I: Synthesis and antimicrobial evaluation of C-furyl glycosides and chalcones derived therefrom

New C-furyl glycosides were synthesized in order to increase the number of compounds screened for antimicrobial activity. The antimicrobial activity showed that the bromo as well as the nitro derivatives were the most active compounds. Correspondence: Adel A.-H. Abdel-Rahman, Faculty of Science, Department of Chemistry, Menoufia University, Shebin El-Koam, Egypt.     

A selective optical sensor for antimony based on hexagonal mesoporous structures

Mesostructured materials show promise in fabricating ordered sensing systems in a reproducible manner. Here, the fabrication of optically selective and sensitive sensors up to subnanomolar concentrations of Sb(III) ions was reported via simple and reproducible techniques in which the hexagonal mesoporous silicas in powder and monolith forms were used as probe carriers. Evidence of successful fabrication of the optical sensors was investigated by extensive characterizations using powder X-ray diffraction, nitrogen adsorption/desorption isotherms, 29Si NMR spectroscopy, and transmission electron microscopy. The mesostructured features allowed high adsorption capacity and accessibility of probe molecules and efficient transport of toxic species via much more direct and easier diffusion to the network sites without significant alteration of their physical characteristics, leading to excellent sensing systems in terms of stability and sensitivity with rapid response time of detection. In addition, the high performance of the hexagonal sensors was dependent on key factors such as the number of support-based sensors, the reaction temperature, and the pH value that led to possible naked-eye detection of Sb(III) ion concentration with a detection limit as low as 3x10(-9) mol/dm3 and a wide detection range of 1 ppb-2 ppm. Of particular interest was that our mesostructured sensor design provided control over the retention of the potential functionality of the naked-eye sensing system of Sb(III) ions upon the storage and even after several regeneration and reuse cycles, indicating large-scale reversibility of sensing systems.     

Understanding microscopic binding of human microsomal prostaglandin E synthase-1 with substrates and inhibitors by molecular modeling and dynamics simulation

Microsomal prostaglandin E synthase-1 (mPGES-1) is a promising target for development of next-generation anti-inflammatory drugs. It is crucial for rational design of the next-generation anti-inflammatory drugs to know the three-dimensional (3D) structure of mPGES-1 trimer and to understand how mPGES-1 binds with substrates and inhibitors. In the current work, a 3D structural model of human mPGES-1 trimer has been developed, for the first time, by performing combined homology modeling, molecular docking, and molecular dynamics simulation. The 3D structural model enables us to understand how mPGES-1 binds with its substrates/inhibitors, and the key amino acid residues for the mPGES-1 binding with ligands have been identified. The detailed 3D structures and calculated binding free energies for mPGES-1's binding with substrates and inhibitors are all consistent with available experimental data, suggesting that the 3D model of the mPGES-1 trimer and the enzyme-ligand binding modes are reasonable. The new structural insights obtained from this study should be valuable for rational design of next-generation anti-inflammatory drugs.     

Heavy metal removal using SiO<Subscript>2</Subscript>-TiO<Subscript>2</Subscript> binary oxide: experimental design approach

Sorption of Ni²⁺ and Cd²⁺ as heavy metals ions at the interface of the binary oxide TiO₂-SiO₂ was investigated. In addition, physical properties of TiO₂-SiO₂ matrices such as BET surface area, X-ray diffraction, and point of zero charge (pH_PZC) were measured. Statistical design of experiments was applied to find the conditions of sorption at which the maximum heavy metal removal was achieved. A second order polynomial function was used to correlate the independent variables (pH, metal ion concentration, and shaking time) and response (heavy metal removal). Values of regression parameters were determined by the computer program, Design expert^® (Stat-Ease Inc.). The quality of fit of the polynomial model equation was expressed by the regression coefficient R ². The sorption results showed that the pH is the most significant factor. In turn, the sorbed percentage reached 100% at high initial concentration and long shaking times due to formation of hydroxyl compounds between the ions and TiO₂-SiO₂ matrices. The results show that there is a Gaussian (normal) distribution of residuals (squared differences between experimentally observed and predicted values from the model), and also that the differences between observed and predicted values are in the range of ±5%. These indicate that experiments were well-conducted and the results have no significant error.     

Synthesis of Morphlinotetrahydrothieno[2,3‐c]Isoquinolines

1‐Morpholin‐4‐yl‐5,6,7,8‐tetrahydroisoquinoline‐4‐carbonitrile ( 2 ) was synthesized from 3‐amino‐1‐thioxo‐5,6,7,8‐tetrahydro‐1H‐isothiochromene‐4‐carbonitrile ( 1 ) and used as starting material to synthesize many thienotetrahydroisoquinolines ( 4 ), which in turn were used in the synthesis of many pyrimidothienotetrahydroisoquinolines.     

Preconditioning techniques for an image deblurring problem

In this paper, we consider the solution of a large linear system of equations, which is obtained from discretizing the Euler–Lagrange equations associated with the image deblurring problem. The coefficient matrix of this system is of the generalized saddle point form with high condition number. One of the blocks of this matrix has the block Toeplitz with Toeplitz block structure. This system can be efficiently solved using the minimal residual iteration method with preconditioners based on the fast Fourier transform. Eigenvalue bounds for the preconditioner matrix are obtained. Numerical results are presented. Copyright © 2016 John Wiley & Sons, Ltd.     

Computational Design,Synthesis and Application of a New Selective Molecularly Imprinted Polymer for Electrochemical Detection

A computational approach was developed to find a suitable functional monomer to design a new molecularly imprinted polymer (MIP), based on which methacyrlic acid (MAA) was selected as a functional monomer to synthesize the molecular imprinted and non‐imprinted polymers. All calculations were carried out using Gaussian 03 software based on the application of Hartree?Fock (HF) method with 6‐31G (d) basis set. The performance of the MIPs prepared with different ratios of MAA was then evaluated using equilibrium rebinding assays. The MIP with the highest binding capacity was chosen as recognition material for the fabrication of new PVC sensors and their responses were compared with each other and with previously reported modifiers in literature. The addition of the ionic surfactant (TFPB) was found to have a synergistic effect on the response mechanism of the electrodes. The results of the MIP modified sensors show that they provide an improved electrode slope, wider pH range and a highly extended life time reaching 7 months compared to 2–4 weeks in case of traditional ion‐exchangers reported in literature, besides, being successfully applied for measurements in biological samples.     

Modern pathology: protein mis-folding and mis-processing in complex disease

Electrostatic and electrochemical properties of bio-molecules, such as proteins, are governed by energy parameters that are, in part dependent on its folding. Disruption of this process can lead to the development of complex, multisystem diseases whose presentation may be organ-dependent. Examples include cystic fibrosis, alpha-1 antitrypsin deficiency, and Alzheimer disease. In addition to explaining exotic pathologic syndromes, an understanding of protein folding mechanisms may facilitate the understanding of less complex diseases and allow the development of novel therapeutic approaches.     

Optical nanosensor design with uniform pore geometry and large particle morphology

Appropriate design of nanosensors for optically selective, sensitive sensing systems is needed for naked-eye detection of pollutants for environmental cleanup of toxic heavy-metal ions. Mesostructured materials with two- or three-dimensional (2D or 3D) geometries and large particle morphologies show promise as probe carriers, and can therefore be used to reproducibly fabricate uniformly packed nanosensors. This is the first report on the effects of significant key properties of the mesostructured carriers, such as morphology, geometry, and pore shape, on the functionality of optical nanosensor designs. Such mesostructured sensors with superior physical characteristics can be used as components in sensing systems with excellent stability and sensitivity, and with rapid detection response. The nanosensor design can enhance the selectivity even at low concentrations of the pollutant target ions (nanomolar level). Among the nanosensors developed here, the large pore-surface grains of highly ordered 3D monoliths (HOM) exhibited a high adsorption capability of the Pyrogallol Red probe and high accessibility to analyte ion transport, leading to possible naked-eye detection of Sb(III) ions at concentrations as low as 10(-9) mol dm(-3) and at a wide detection range of 0.5 ppb to 3 ppm. A key finding in our study was that our mesostructured nanosensor designs retained highly efficient sensitivity without a significant increase in kinetic hindrance, despite the slight decrease of the specific activity of the electron acceptor/donor strength of the probe functional group after several regeneration/reuse cycles. The results, in general, indicate that large-scale reversibility of optical nanosensors is feasible in such metal-ion sensing systems.     

The N-terminal His-tag affects the enantioselectivity of staphylococcal lipases: a monolayer study

In order to check the influence of the polyhistidine tag at the N-terminus of recombinant lipases, a comparative study on the interfacial properties of native and recombinant Staphylococcus simulans (SSL and rSSL) or Staphylococcus xylosus lipase (SXL and rSXL) was investigated using the monomolecular film technique. No phospholipase activity was detected with rSSL or rSXL when using different phospholipids spread as monomolecular films maintained at various surface pressures, suggesting that the His-tag in the N-terminus of the recombinant proteins, do not affect the substrate recognition. The critical surface pressure measured with monomolecular films of egg-PC was slightly lowered with the two recombinant proteins compared to the native SSL or SXL one. A kinetic study on the surface pressure dependency, stereoselectivity and regioselectivity of native and recombinant SSL or SXL was performed using three dicaprin isomers spread as monomolecular films at the air-water interface. Our results show clearly that the presence of polyhistidine tag at the N-terminus of SSL or SXL changes their stereo- and regioselectivity.