Updated Abraham model correlations for enthalpies of solvation of organic solutes dissolved in benzene and acetonitrile

A search of the published chemical and engineering literature found enthalpy of solution data for an additional 104 and 49 organic compounds dissolved in benzene and acetonitrile, respectively. Standard thermodynamic relationships were used to convert the experimental enthalpy of solution data, ΔH_solv, to enthalpies of solvation, ΔH_solv. Updated Abraham model correlations were derived for describing gas-to-benzene and gas-to-acetonitrile enthalpies of solvation by combining the 104 and 49 additional values to existing benzene and acetonitrile ΔH_solv databases. The updated Abraham model correlations for benzene and acetonitrile described the observed ΔH_solv values to within overall standard deviations of less than 3.4 kJ mol^?1.     

Estimation of Dimerisation Constants from Complexatin-Induced Displacements of 1H-NMR Chemical Shifts: Dimerisation of Caffeine

The determination of the dimerisation constant (K^D) for the weak self-association of a compound C in dilute solution according to the equilibrium, 2C?C₂ is described. The method uses chemical shifts measured on a series of solutions of C at different concentrations: the optimum K^D is defined by a linear regression best-fit procedure, which simultaneously determines optimum values for δ_o and also for δ_∞, the intrinsic chemical shifts for nuclei in the monomer and dimer species. The dimerisation of caffeine in D₂O is used as a model to demonstrate the working of the method and the quality of results obtained. The most probable value of K_D for caffeine at 30.5° is found in the range 5.5–6.0 kg solution · mol^?1, and the enthalpy and entropy of dimerisation are found to be ΔH^? = ?15.1 kJ · mol^?1 and ΔS^? = ?35.3 J · °C^?1 · mol^?1, respectively. The influence of small errors in δ_o on the confidence limits of K^D is discussed.     

Studies with model membranes. IX. Evaluation of thermodynamic parameters from the transition state theory of rate processes for electrolyte diffusion through silver chloride parchment-supported membranes

Diffusion rate of biologically important electrolytes through parchment-supported silver chloride membrane have been determined by the use of Nernst-Planck equation at various temperatures taking into account membrane resistance R_m, membrane potential E_m, etc. The diffusion rates were found to be primarily dependent upon the difference in the hydration energies of the counterion in the external solution. On the basis of Eisenman-Sherry theory the diffusion rate sequence of alkali metal cations point towards the weak field strengths of the fixed charge groups. The various thermodynamic parameters, namely, ΔH^?, ΔF^?, and ΔS^? were evaluated. The values of ΔS^? found to be negative, indicating that the diffusion is taking place with partial immobilization in the membrane phase. A formal relation between ΔH_hydration, ΔF_hydration, and ΔS_hydration of cations with the corresponding values of ΔH^?, ΔF^?, and ΔS^? for diffusion was also found to exist for the investigated system.     

Application of halo polyhydroxy polyurethane foam for the extraction of cobalt from cobalamin drugs and urine

Polyhydroxy polyurethane sorbent was modified by the addition of halogen atoms to its matrix to produce a new sorbent distinguished by high surface polarity, enhanced capacity, and improved stability in both acidic and alkaline media. Halo polyhydroxy polyurethane foam (X-PPF) was characterized by NMR, FTIR, UV–Vis, Raman spectroscopy, pH_ZCP values, and scanning electron microscopy images. Experimental studies have proven that X-PPFs have a great potential for the extraction and recovery of cobalt ions and this was attributed to the presence of halogen, phenolic, and urethane groups. The pH_ZCP value of X-PPFs was determined to be 0.91 and the maximum metal recovery was achieved at a pH range of 6–7. The kinetics of the process was best described by pseudo-second-order model (R²?=?1). ΔH, ΔS, and ΔG values were calculated to be ?57.2?kJ?mol^?1, ?172.6?J?K^?1?mol^?1, and ?5.8?kJ?mol^?1, respectively. A perfect isotherm curve with zero intercept (0.002), good correlation (R²?=?0.999), and capacity of 246.8?mg?g^?1 was obtained.     

Is There a Minimum Electrophilicity Principle in Chemical Reactions？

For 25 simple reactions, the changes of the hardness （△η）, polarizability （△α） and electrophilicity index （△ω） and their cube-roots （△η^1/3, △α^1/3, △ω^1/3） were calculated. It is shown that although the Maximum Hardness and Minimum Polarizability Principles are not valid for all reactions, but in most cases △ω^1/3〈0, whereas we always find △ω〈0. Our observation implies to this fact that for those chemical reactions in which the number of moles decreases or at least remains constant, the most stable species （reactants or products） have the lowest sum of electrophilicities. In other words ＂the natural direction of a chemical reaction is toward a state of minimum electrophilicity＂. This fact may be called Minimum Electrophilicity Principle （MEP）.     

Supramolecular Binding Thermodynamics by Dispersion‐Corrected Density Functional Theory

The equilibrium association free enthalpies ΔG_a for typical supramolecular complexes in solution are calculated by ab initio quantum chemical methods. Ten neutral and three positively charged complexes with experimental ΔG_a values in the range 0 to ?21 kcal mol^?1 (on average ?6 kcal mol^?1) are investigated. The theoretical approach employs a (nondynamic) single‐structure model, but computes the various energy terms accurately without any special empirical adjustments. Dispersion corrected density functional theory (DFT‐D3) with extended basis sets (triple‐ζ and quadruple‐ζ quality) is used to determine structures and gas‐phase interaction energies (ΔE), the COSMO‐RS continuum solvation model (based on DFT data) provides solvation free enthalpies and the remaining ro‐vibrational enthalpic/entropic contributions are obtained from harmonic frequency calculations. Low‐lying vibrational modes are treated by a free‐rotor approximation. The accurate account of London dispersion interactions is mandatory with contributions in the range ?5 to ?60 kcal mol^?1 (up to 200 % of ΔE). Inclusion of three‐body dispersion effects improves the results considerably. A semilocal (TPSS) and a hybrid density functional (PW6B95) have been tested. Although the ΔG_a values result as a sum of individually large terms with opposite sign (ΔE vs. solvation and entropy change), the approach provides unprecedented accuracy for ΔG_a values with errors of only 2 kcal mol^?1 on average. Relative affinities for different guests inside the same host are always obtained correctly. The procedure is suggested as a predictive tool in supramolecular chemistry and can be applied routinely to semirigid systems with 300–400 atoms. The various contributions to binding and enthalpy–entropy compensations are discussed.     

A Thermodynamic and Kinetic Insight into the Pathways Leading to a Highly Functionalized Ketenimine: A Computational Study

All steps of two mechanistic pathways for the synthesized ketenimine through a multicomponent reaction between cyclohexyl isocyanide 1 and acetylen ester 2 in the presence of CH‐acid 3 have been thermodynamically and kinetically evaluated. Intrinsic reaction coordinate calculations were performed for the optimized structures to verify the connectivity of all transition states with reactants and products. The kinetic data showed that the step 1 of the two proposed mechanisms was a rate‐determining step. Also, activation (ΔG^?, ΔH^?, ΔS^?) and thermodynamic (ΔG°, ΔH°, ΔS°) parameters confirmed that the second mechanism for generation product 4b was favored energetically. In addition, the single‐point ¹H and ¹³C NMR (GIAO) chemical shift calculations showed that the product obtained from the approval pathway was according to the experimental data.     

Lipophilicity Behavior of Model and Medicinal Compounds containing a suilfide,sulfoxide, or sulfone moiety

This study was designed to unravel lipophilicity changes associated with the oxidation state of the S-atom in model compounds, drugs, and metabolites, special attention being given both to intermolecular and intramolecular effects. The methods used were experimental (potentiometry, CPC, and shake-flask techniques to measure lipophilicity, ¹³C-NMR spectroscopy to investigate tautomeric equilibria) and computational (quenched molecular dynamics and molecular lipophilicity potential). Simple, monofunctional model compounds were used to assess intermolecular forces, as revealed by the Δlog P_oct–alk and Δlog P_oct–chf parameters. Drugs and their metabolites proved to be good probes to study intramolecular effects in both neutral and anionic forms, as revealed by the difference between calculated and experimental log P_oct values (the diff(log P^exp–calc) parameter). Sulindac and its metabolites showed a normal partitioning behavior, whereas the lipophilicity of sulfmpyrazone and its metabolites' was markedly affected by tautomeric and conformational equilibria.     

Comprehensive classification of USA cannabis samples based on chemical profiles of major cannabinoids and terpenoids

Abstract

Different USA-origin cannabis samples were analyzed by GC-FID to quantify all possible cannabinoids and terpenoids prior to their clustering. Chromatographic analysis confirmed the presence of seven cannabinoids and sixteen terpenoids with variable levels. Among tested cannabinoids, Δ⁹-Tetrahydrocannabinol Δ⁹-THC and cannabinol CBN were available in excess amounts (1.2–8.0?wt%) and (0.22–1.1?wt%), respectively. Fenchol was the most abundant terpenoid with a range of (0.03–1.0?wt%). The measured chemical profile was used to cluster 23 USA states and to group plant samples using different unsupervised multivariate statistical tools. Clustering of plant samples and states was sensitive to the selected cannabinoids/terpenoids. Principal component analysis (PCA) indicated the importance of Δ⁹-THC, CBN, CBG, CBC, THCV, Δ⁸-THC, CBL, and fenchol for samples clustering. Δ⁹-THC was significant to separate California-origin samples while CBN and fenchol were dominant to separate Oregon-origin samples away from the rest of cannabis samples. A special PCA analysis was performed on cannabinoids after excluding Δ⁹-THC (due to its high variability in the same plant) and CBN (as a degradation byproduct for THC). Results indicated that CBL and Δ⁸-THC were necessary to separate Nevada and Washington samples, while, CBC was necessary to isolate Oregon and Illinois plant samples. PCA based on terpenoids content confirmed the significance of caryophyllene, guaiol, limonene, linalool, and fenchol for clustering target. Fenchol played a major role for clustering plant samples that originated from Washington and Nevada. k-means method was more flexible than PCA and generated three different classes; samples obtained from Oregon and California in comparison to the rest of other samples were obviously separated alone, which attributed to their unique chemical profile. Finally, both PCA and k-means were useful and quick guides for cannabis clustering based on their chemical profile. Thus, less effort, time, and materials will be consumed in addition to decreasing operational conditions for cannabis clustering.     

Towards a Stronger Halogen Bond Involving Astatine: Unexpected Adduct with Bu3PO Stabilized by Hydrogen Bonding

The halogen bond is a powerful tool for the molecular design and pushing the limits of its strength is of major interest. Bearing the most potent halogen-bond donor atom, astatine monoiodide (AtI) was recently successfully probed [Nat. Chem. 2018 , 10, 428–434]. In this work, we continue the exploration of adducts between AtI and Lewis bases with the tributylphosphine oxide (Bu₃PO) ligand, revealing the unexpected experimental occurrence of two distinct chemical species with 1:1 and 2:1 stoichiometries. The 1:1 Bu₃PO⋅⋅⋅AtI complex is found to exhibit the strongest astatine-mediated halogen bond so far (with a formation constant of 10^(4.24±0.35)). Quantum chemical calculations unveil the intriguing nature of the 2:1 2Bu₃PO⋅⋅⋅AtI adduct, involving a halogen bond between AtI and one Bu₃PO molecular unit plus CH⋅⋅⋅O hydrogen bonds chelating the second Bu₃PO unit.     

Stereoregularity of poly(alkyl α-chloroacrylates) and mechanism of isotactic polymerization

The catalytic activity of the complexes prepared by the reaction of Grignard reagents with ketones, esters, and an epoxide as polymerization catalysts of methyl and ethyl α-chloroacrylates was investigated. The modifiers which gave isotactic polymers were α,β-unsaturated ketones such as benzalacetophenone, benzalacetone, dibenzalacetone, mesityl oxide, and methyl vinyl ketone, and α,β-unsaturated esters such as ethyl cinnamate, ethyl crotonate, and methyl acrylate. Catalysts with butyl ethyl ketone, propiophenone, and propylene oxide as modifiers produced atactic polymers but no isotactic polymers. It was revealed that the complex catalysts having a structure ? C?C? O? MgX (X is halogen) gave isotactic polymers. The mechanism of isotactic polymerization was discussed. In addition, for radical polymerization of ethyl α-chloroacrylate, enthalpy and entropy differences between isotactic and syndiotactic additions were calculated to give ΔH_i^* ? ΔH_s^* = 910 cal/mole and ΔS_i^* ? ΔS_s^* = 0.82 eu.     

Hydrogen Bond Acceptor Propensity of Different Fluorine Atom Types: An Analysis of Experimentally and Computationally Derived Parameters

The propensity of organic fluorine acting as a weak hydrogen bond acceptor (HBA) in intermolecular and intramolecular interactions has been the subject of many experimental and theoretical studies often reaching different conclusions. Over the last few years, new and stronger evidences have emerged for the direct involvement of fluorine in weak hydrogen bond (HB) formation. However, not all the fluorine atom types can act as weak HBA. In this work, the differential HBA propensity of various types of fluorine atoms was analyzed with a particular emphasis for the different types of alkyl fluorides. This was carried out by evaluating ab initio computed parameters, experimental ¹⁹F NMR chemical shifts and small molecule crystallographic structures (extracted from the CSD database). According to this analysis, shielded (with reference to the ¹⁹F NMR chemical shift) alkyl mono-fluorinated motifs display the highest HBA propensity in agreement with solution studies. Although much weaker than other well-characterized HB complexes, the fragile HBs formed by these fluorinated motifs have important implications for the chemical-physical and structural properties of the molecules, chemical reactions, and protein–ligand recognition.     

Detection of halogen bond formation by correlation of proton solvent shifts. 1. Haloforms in n-electron donor solvents

The solvent shifts of haloformic protons, (Cl₃CH, Br₃CH, I₃CH), have been measured in 24 n-electron donor solvents consisting of halogenated hydrocarbons, esters, ketones, ethers and amines. Deviations of Δ_Br and Δ₁ from linear dependence with Δ_Cl are indicative of the presence of halogen bond formation competitive with hydrogen bonding interactions. Bromoform interacts predominantly by hydrogen bonding, halogen bonding being detected to a small extent in chlorinated hydrocarbons and amines. Iodoform shows halogen bonding interactions which increase in relative importance to hydrogen bonding with solvent basicity. Halogen bonding is predominant for solutions of iodoform in amines.     

Kinetic and thermodynamic properties of the aerial oxidation of hydroquinone in developer solutions

The aerial oxidation kinetics of hydroquinone in a freshly prepared developer solution at different temperatures and pHs has been studied. The activation parameters, Ea, ΔG# , ΔS# , ΔH# and enthalpy of formation of activated complex, ΔHfo(X# ), are determined. The large negative value of free energy of activation ΔG# proves that hydroquinone extremely tends to be oxidized by air at optimum temperature (20℃) and optimum pH (10.5) and converts to the activated complex semiquinone. It was also found that if the pH of the developer solution is increased from 9.3 to 10.5 the reaction rate will increase by a factor of 2.     

Multinuclear Solid‐State Magnetic Resonance as a Sensitive Probe of Structural Changes upon the Occurrence of Halogen Bonding in Co‐crystals

Although the understanding of intermolecular interactions, such as hydrogen bonding, is relatively well‐developed, many additional weak interactions work both in tandem and competitively to stabilize a given crystal structure. Due to a wide array of potential applications, a substantial effort has been invested in understanding the halogen bond. Here, we explore the utility of multinuclear (¹³C, ^14/15N, ¹⁹F, and ¹²⁷I) solid‐state magnetic resonance experiments in characterizing the electronic and structural changes which take place upon the formation of five halogen‐bonded co‐crystalline product materials. Single‐crystal X‐ray diffraction (XRD) structures of three novel co‐crystals which exhibit a 1:1 stoichiometry between decamethonium diiodide (i.e., [(CH₃)₃N⁺(CH₂)₁₀N⁺(CH₃)₃][2 I^?]) and different para‐dihalogen‐substituted benzene moieties (i.e., p‐C₆X₂Y₄, X=Br, I; Y=H, F) are presented. ¹³C and ¹⁵N NMR experiments carried out on these and related systems validate sample purity, but also serve as indirect probes of the formation of a halogen bond in the co‐crystal complexes in the solid state. Long‐range changes in the electronic environment, which manifest through changes in the electric field gradient (EFG) tensor, are quantitatively measured using ¹⁴N NMR spectroscopy, with a systematic decrease in the ¹⁴N quadrupolar coupling constant (C_Q) observed upon halogen bond formation. Attempts at ¹²⁷I solid‐state NMR spectroscopy experiments are presented and variable‐temperature ¹⁹F NMR experiments are used to distinguish between dynamic and static disorder in selected product materials, which could not be conclusively established using solely XRD. Quantum chemical calculations using the gauge‐including projector augmented‐wave (GIPAW) or relativistic zeroth‐order regular approximation (ZORA) density functional theory (DFT) approaches complement the experimental NMR measurements and provide theoretical corroboration for the changes in NMR parameters observed upon the formation of a halogen bond.     

Halogen effect on structure and 13C NMR chemical shift of 3,6‐disubstituted‐N‐alkyl carbazoles

Structures of selected 3,6‐dihalogeno‐N‐alkyl carbazole derivatives were calculated at the B3LYP/6‐311++G(3df,2pd) level of theory, and their ¹³C nuclear magnetic resonance (NMR) isotropic shieldings were predicted using density functional theory (DFT). The model compounds contained 9H, N‐methyl and N‐ethyl derivatives. The relativistic effect of Br and I atoms on nuclear shieldings was modeled using the spin–orbit zeroth‐order regular approximation (ZORA) method. Significant heavy atom shielding effects for the carbon atom directly bonded with Br and I were observed (~?10 and ~?30 ppm while the other carbon shifts were practically unaffected). The decreasing electronegativity of the halogen substituent (F, Cl, Br, and I) was reflected in both nonrelativistic and relativistic NMR results as decreased values of chemical shifts of carbon atoms attached to halogen (C3 and C6) leading to a strong sensitivity to halogen atom type at 3 and 6 positions of the carbazole ring. The predicted NMR data correctly reproduce the available experimental data for unsubstituted N‐alkylcarbazoles. Copyright © 2013 John Wiley & Sons, Ltd.     

Effects of solvent on weak halogen bonds: Density functional theory calculations

In recent years, many applications of solution‐phase halogen bonding in anion recognition, catalysis, and pseudorotaxane formation have been reported. Moreover, a number of thermodynamic data of halogen bonding interactions in organic solution are now available. To obtain detailed information of the influence of the surrounding medium on weak halogen bonds, a series of dimeric complexes of halobenzene (PhX) with three electron donors (H₂O, HCHO, and NH₃) were investigated by means of DFT/PBE calculations in this work. The PCM implicit solvation approach was utilized to include the effects of three solvents (cyclohexane, chloroform, and water) as representatives for a wide range of dielectric constant. In some cases, halogen‐bond distances are shown to shorten in solution, accompanied by concomitant elongation of the C? X bonds. For the remaining systems, the intermolecular distances tend to increase or remain almost unchanged under solvent effects. In general, the solvent has a slight destabilizing effect on weak halogen bonds; the strength order of halogen bonds observed in vacuum remains unchanged in liquid phases. Particularly, the interaction strength attenuates in the order I > Br > Cl in solution, consistent with the experimental measurements of weak halogen bond door abilities. The similarities between halogen and hydrogen bonding in solution were also elucidated. The results presented herein would be very useful in future applications of halogen bonding in molecular recognition and medicinal chemistry. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2012     

1H NMR and Calorimetric Studies of the Inclusion of Trimethylammonium Cations into Water Soluble Calixresorcinarenes

Abstract

The complexation of tetramethylammonium (TEMA), benzyltrimethylammonium (BTMA), p-nitrobenzyltrimethylammonium (BTMAN) and N, N, N-trimethylanilinium (TMA) by the tetrasulphonate derivative of the resorcinol cyclic tetramer (1), was studied in aqueous solution by ¹H NMR and calorimetry. Host 1 specifically recognizes the—N⁺ (CH₃)₃ group of TEMA, BTMA and BTMAN, whereas it binds TMA unselectively; TMA is included both via the charged group and the aromatic moiety. The binding constants of all four guests with 1, as determined by both ¹H NMR and calorimetric titrations, show that all inclusion processes are almost equally stabilised.

ΔHΔ and ΔSΔ values, determined by direct calorimetry, reveal specific interactions that are not expressed in the ΔGΔ terms and indicate that we are dealing with “non-classical hydrophobic effects”. The effects of the structural, conformational and electronic properties of the guests on the forces driving the inclusion processes are discussed.     

Carbon-13 NMR spectra of polybromoalkanes and polychlorobromoalkanes. Structural increments of halogens in polyhalogenated groups

The ¹³C NMR spectra of 48 polychlorobromoalkanes have been studied. Unlike the ¹³C signals of chlorine-containing groups (38–105 ppm), those of bromine-containing fragments, with the exception of CBr₂ (60–70 ppm), appear in a rather narrow range (25–50 ppm) and are shifted to higher field in relation to similar chlorine-containing groups. The spin–spin coupling constants in similar bromine- and chlorine-containing groups practically coinciEN. Calculation of the chemical shifts for the polyhaloalkanes under study according to the additivity scheme, as previously observed for polychloroalkanes, renders values which are in considerable discord with experimental values (up to –32 ppm for CBr₃). These discrepancies may be compensated for by corrections for the binary interaction of halogen atoms by grouping the halogen-containing fragments according to the geminal, vicinal, 1,3-, 1,3,5- and 1,2,3-arrangement of halogen atoms, and by introducing an increment for the position of the halogen at the secondary atom. It is established that as compared to 1-monohaloalkanes: (a) in the case of the geminal arrangement of halogen atoms the α- and γ-effects diminish (Δ α from –3.2 to –8 ppm; Δγ = 2.6 ppm), while the β-effect increases slightly (from 0 to 1.2 ppm); (b) in the case of a vicinal arrangement both the α- and β-effects diminish (by about –3.5 ppm) and the γ-effect remains constant, as if the vicinal system of the halogens was topologically insulated; (c) for the 1,3- and 1,3,5-arrangement of halogens their mutual influence is weak (about –0.5 ppm for each halogen atom in the α- and γ-positions); (d) the 1,2,3 system (serial arrangement of halogen atoms) is the sum of two vicinal fragments and hardly deviates from the additivity scheme; (e) the arrangement of a halogen at the secondary C atom enhances the α-effect (Δα = 2.8 and 1.0 for methyl and methylene, respectively, in the case of Cl, and 3.5 and 3.7 ppm in the case of Br); the variation of the β-effect has a different sign in relation to CH₃ and CH₂ groups (+1.2 and –1.7 for Cl, and +2.5 and –1.0 for Br). More distant effects of halogens (δ and ?) were not considered. The determined increments (Δα, Δβ and Δγ) for the α-, β- and γ-effects of chlorine and bromine atoms allow the prediction of the 13^C chemical shifts in polyhaloalkanes with an accuracy up to ±1.5 ppm. Some deviations of up to ±5 ppm may be connected with the influence of a three particle interaction of halogen atoms, which was taken into account only in the case of a geminal arrangement of halogen atoms.