Single‐Molecule Methods to Study Membrane Receptor Oligomerization

Membrane receptors control fundamental cellular processes. Binding of a specific ligand to a receptor initiates communication through the membrane and activation of signaling cascades. This activation process often leads to a spatial rearrangement of receptors in the membrane at the molecular level. Single‐molecule techniques contributed significantly to the understanding of receptor organization and rearrangement in membranes. Here, we review four prominent single‐molecule techniques that have been applied to membrane receptors, namely, stepwise photobleaching, Förster resonance energy transfer, sub‐diffraction localization microscopy and co‐tracking. We discuss the requirements, benefits and limitations of each technique, discuss target labeling, present a selection of applications and results and compare the different methodologies.     

Two‐Photon‐Induced Fluorescence of Isomorphic Nucleobase Analogs

Five isomorphic fluorescent uridine mimics have been subjected to two‐photon (2P) excitation analysis to investigate their potential applicability as non‐perturbing probes for the single‐molecule detection of nucleic acids. We find that small structural differences can cause major changes in the 2P excitation probability, with the 2P cross sections varying by over one order of magnitude. Two of the probes, both thiophene‐modified uridine analogs, have the highest 2P cross sections (3.8 GM and 7.6 GM) reported for nucleobase analogs, using a conventional Ti:sapphire laser for excitation at 690 nm; they also have the lowest emission quantum yields. In contrast, the analogs with the highest reported quantum yields have the lowest 2P cross sections. The structure‐photophysical property relationship presented here is a first step towards the rational design of emissive nucleobase analogs with controlled 2P characteristics. The results demonstrate the potential for major improvements through judicious structural modifications.     

Orientation‐Controlled Single‐Molecule Junctions

The conductivity of a single aromatic ring, perpendicular to its plane, is determined using a new strategy under ambient conditions and at room temperature by a combination of molecular assembly, scanning tunneling microscopy (STM) imaging, and STM break junction (STM‐BJ) techniques. The construction of such molecular junctions exploits the formation of highly ordered structures of flat‐oriented mesitylene molecules on Au(111) to enable direct tip/π contacts, a result that is not possible by conventional methods. The measured conductance of Au/π/Au junction is about 0.1 G_o , two orders of magnitude higher than the conductance of phenyl rings connected to the electrodes by standard anchoring groups. Our experiments suggest that long‐range ordered structures, which hold the aromatic ring in place and parallel to the surface, are essential to increase probability of the formation of orientation‐controlled molecular junctions.     

Iron Polyoxometalate Single‐Molecule Magnets

Iron sandwich on a tungstate bun : Two new polyoxotungstates with paramagnetic iron(III) heteroatoms (see structure, W blue, Fe yellow, O red) possess S=15/2 and S=5 ground states. Both compounds are single‐molecule magnets, and the hexairon species shows large hysteresis (see picture) and quantum tunneling effects at low temperature. Electrochemical studies indicate that these species are stable in solution for a wide range of pH values.

     

Yoctoliter Thermometry for Single‐Molecule Investigations: A Generic Bead‐on‐a‐Tip Temperature‐Control Module

A new temperature‐jump (T‐jump) strategy avoids photo‐damage of individual molecules by focusing a low‐intensity laser on a black microparticle at the tip of a capillary. The black particle produces an efficient photothermal effect that enables a wide selection of lasers with powers in the milliwatt range to achieve a T‐jump of 65 °C within milliseconds. To measure the temperature in situ in single‐molecule experiments, the temperature‐dependent mechanical unfolding of a single DNA hairpin molecule was monitored by optical tweezers within a yoctoliter volume. Using this bead‐on‐a‐tip module and the robust single‐molecule thermometer, full thermodynamic landscapes for the unfolding of this DNA hairpin were retrieved. These approaches are likely to provide powerful tools for the microanalytical investigation of dynamic processes with a combination of T‐jump and single‐molecule techniques.     

Variable Temperature Single‐Molecule Dynamics of MEH‐PPV

Herein, we continue our investigation of the single‐molecule spectroscopy of the conjugated polymer poly[2‐methoxy,5‐(2′‐ethylhexyloxy)‐p‐phenylene‐vinylene] (MEH‐PPV) at cryogenic temperatures. First, the low temperature microsecond dynamics of single MEH‐PPV conjugated polymer molecules are compared to the dynamics at room temperature revealing no detectible temperature dependence. The lack of temperature dependence is consistent with the previous assignment of the dynamics to a mechanism that involves intersystem crossing and triplet–triplet annihilation. Second, the fluorescence spectra of single MEH‐PPV molecules at low temperature are studied as a function of excitation wavelength (i.e. 488, 543, and 568 nm). These results exhibit nearly identical fluorescence spectra for different excitation wavelengths. This strongly suggests that electronic energy transfer occurs efficiently to a small number of low‐energy sites in the multichromophoric MEH‐PPV chains.     

Spectroscopic and magnetic investigations of actinide‐based nanomagnets

Magnetic exchange is an essential feature of transition‐metal nanomagnets because it combines the relatively low spin‐only moments of several ions into a “giant spin” ground state, which can make slow magnetic relaxation very favorable in an axially anisotropic environment. In contrast, most of the early research on lanthanide‐based complexes focused on single‐ion magnets, where the required large moment is generated by the unquenched orbital contribution (which is parallel to the spin in heavy rare earths). With their unfilled 5f electronic shell being on the verge between localization and itinerancy, actinides are expected to combine the best of both 3d and 4f metals in terms of exchange and anisotropy, and are therefore under consideration as potential building blocks for the next generation of single‐molecule magnets. In this Perspective, a review of the recent development in this field is given, and some discrepancies between the spectroscopic and magnetic data are discussed. © 2014 European Commission. International Journal of Quantum Chemistry published by Wiley Periodicals, Inc.     

Structure‐Dependent Electronic Nature of Star‐Shaped Oligothiophenes,Probed by Ensemble and Single‐Molecule Spectroscopy

We have investigated the photophysical properties of star‐shaped oligothiophenes with three terthiophene arms (meta to each other, S3 ) or six terthiophene arms (ortho‐, meta‐, and para‐arranged, S6 ) connected to an ethynylbenzene core to elucidate the relationship between their molecular structure and electronic properties by using a combination of ensemble and single‐molecule spectroscopic techniques. We postulate two different conformations for molecules S3 and S6 on the basis of the X‐ray structure of hexakis(5‐hexyl‐2‐thienlyethynyl)benzene and suggest the coexistence of these conformers by using spectroscopic methods. From the steady‐state spectroscopic data of compound S6 , we show that the exciton is delocalized over the core structure, but that the meta‐linkage in compound S3 prevents the electronic communication between the arms. However, in single‐molecule spectroscopic measurements, we observed that some molecules of compound S3 showed long fluorescence lifetimes (about 1.4 ns) in the fluorescence‐intensity trajectories, which indicated that π electrons were delocalized along the meta linker. Based on these observations, we suggest that the delocalized exciton is intensely sensitive towards the dihedral angle between the core and the adjacent thiophene ring, as well as to the substituted position of the terthiophene arms. Our results highlight that the fluorescence lifetimes of compounds S3 and S6 are strongly correlated with the spatial location of their excitons, which is mainly affected by their conformation, that is, whether the innermost thiophene rings are facing each other or not. More interestingly, we observed that the difference between the degrees of ring‐torsional flexibility of compounds S3 and S6 results in their sharply contrasting fluorescence properties, such as a change in fluorescence intensity as a function of temperature.     

Rational Design of a Lanthanide‐Based Complex Featuring Different Single‐Molecule Magnets

The rational synthesis of the 2‐{1‐methylpyridine‐N‐oxide‐4,5‐[4,5‐bis(propylthio)tetrathiafulvalenyl]‐1H‐benzimidazol‐2‐yl}pyridine ligand ( L ) is described. It led to the tetranuclear complex [Dy₄(tta)₁₂( L )₂] ( Dy‐Dy₂‐Dy ) after coordination reaction with the precursor Dy(tta)₃?2 H₂O (tta^?=2‐thenoyltrifluoroacetonate). The X‐ray structure of Dy‐Dy₂‐Dy can be described as two terminal mononuclear units bridged by a central antiferromagnetically coupled dinuclear complex. The terminal N₂O₆ and central O₈ environments are described as distorted square antiprisms. The ac magnetism measurements revealed a strong out‐of‐phase signal of the magnetic susceptibility with two distinct sets of data. The high‐ and low‐frequency components were attributed to the two terminal mononuclear single‐molecule magnets (SMMs) and the central dinuclear SMM, respectively. A magnetic hysteresis loop was detected at very low temperature. From both structural and magnetic points of view, the tetranuclear SMM Dy‐Dy₂‐Dy is a self‐assembly of two known mononuclear SMMs bridged by a known dinuclear SMM.     

Butterfly‐Shaped Pentanuclear Dysprosium Single‐Molecule Magnets

Two new “butterfly‐shaped” pentanuclear dysprosium(III) clusters, [Dy₅(μ₃‐OH)₃(opch)₆(H₂O)₃] ? 3 MeOH ? 9 H₂O ( 1 ) and [Dy₅(μ₃‐OH)₃(Hopch)₂(opch)₄(MeOH)(H₂O)₂] ? (ClO₄)₂ ? 6 MeOH ? 4 H₂O ( 2 ), which were based on the heterodonor‐chelating ligand o‐vanillin pyrazine acylhydrazone (H₂opch), have been successfully synthesized by applying different reaction conditions. Single‐crystal X‐ray diffraction analysis revealed that the butterfly‐shaped cores in both compounds were comparable. However, their magnetic properties were drastically different. Indeed, compound 1 showed dual slow‐relaxation processes with a transition between them that corresponded to energy gaps (Δ) of 8.1 and 37.9 K and pre‐exponential factors (τ₀) of 1.7×10^?5 and 9.7×10^?8 s for the low‐ and high‐temperature domains, respectively, whilst only a single relaxation process was noted for compound 2 (Δ=197 K, τ₀=3.2×10^?9 s). These significant disparities are most likely due to the versatile coordination of the H₂opch ligands with particular keto–enol tautomerism, which alters the strength of the local crystal field and, hence, the nature or direction of the easy axes of anisotropic dysprosium ions.