Metastable decomposition of peptide [M + H]+ ions via rearrangement involving loss of the C-terminal amino acid residue

A novel fragmentation of metastable peptide [M + H]⁺ ions is described. Loss of the C-terminal amino acid residue is accomqanied by retention of one of the carboxyl oxygens, as judged by ¹⁸O-labeling. The retained ⁸O label is located at the new C-terminus. Sequential mass spectrometric analyses indicate that the structure of the first-generation product ion is indistinguishable from that of the [M + H]⁺ ion of the peptide with one fewer amino acid residues. Thus, for example, the metastable decompositions of ions of m/z 904 are similar whether they correspond to des-Arg⁹-bradykinin [M + H]⁺ ions or to fragments derived from bradykinin [M + H]⁺ ions. No corresponding rearrangements have been observed for peptides with C-terminal amide or ester functions. The mechanism of this fragmentation may be considered to be analogous to that previously suggested for fragmentations of [M + alkali metal cation]⁺ ions. For the examples of bradykinin and related peptides, the rearrangement is strongly promoted when arginine is the amino acid residue lost. The same fragmentation is also favored by the presence of an arginine residue at or near the N-terminus. The strong influence of peptide amino acid composition, including residues remote from the C-terminus, on the prevalence of this fragmentation suggests mechanistic complexities that require further elucidation.

     

Collision-induced decompositions of [M – H]− and [M + Li]+ ions from fast atom bombardment of dinucleoside phenylphosphonates

The collision-induced decompositions of the [M – H]^? and [M + Li]⁺ ions of a few dinucleoside phenylphosphonates were studied using fast atom bombardment and linked scanning at constant B/E. Deprotonation takes place on the base or sugar moieties. The [M – H]^? ion decomposes mainly by cleavage on either side of the phosphonate linkage, leading to the formation of mononucleotide fragment ions and also by cleavage of the basesugar bond. Rupture of the 3′-phosphonate bond is preferred. Unlike the normal charged nucleotides, these neutral nucleotides do not eliminate a neutral base from the [M – H]^? ion. However, the mononucleotide fragment ions which can have the charge on the phosphorus oxygen eliminate neutral bases by charge-remote fragmentation. The 4,4′-dimethoxytrityl (DMT)-protected nucleotides show the additional fragmentation of loss of DMT. Li⁺ attachment can occur at several sites in the molecule. As observed for the [M – H]^? ion, the major cleavage occurs on either side of the phosphonate bond in the fully deprotected nucleotides, cleavage of the ester bond on C(3′) being preferred. Cleavage of the 5′-phosphonate bond is not observed in the DMT-protected nucleotides. Many of the fragmentations observed can be explained as arising from charge-remote reactions.     

Structural characterization of isomeric triazolocoumarins by high- and low-energy collision spectrometry of M+˙, [M + H]+ and [M − H]− species

Two monometayl- and four dimethyl-triazolocoumarin isomers were characterized by their electron impact mass spectra and by low-energy collision experiments performed on molecular ions M⁺˙ and other fragment ions with an ion-trap mass spectrometer. High-energy collision-activated dissociation measurements were performed on the protonated [M + H]⁺ and deprotonated [M ? H]^? molecular ion obtained by fast atom bombardment and M⁺˙ species produced by electron impact ionization on a double-focusing, reverse-geometry instrument. The data obtained allowed unequivocal structural identification of all the compounds investigated.     

[C]+· and [CH]+ from doubly charged ions formed from malononitrile

The metastable ions [M]²⁺, [M – H]²⁺· and [M – H₂]²⁺ from malononitrile fragment by loss of [CH]⁺, [C]⁺· and [C]⁺·, respectively. The reaction of the molecular ion involves the methylene and nitrile carbon atoms in the statistical probability ratio, while that of [M – H]²⁺· involves exclusively the nitrile carbon and that of [M ? H₂]²⁺ involves an approximately equal contribution, from both sources. It is suggested that the metastable molecular ion fragments through a bipyrimidal intermediate.     

Competitive formation of M+˙ and [M + H]+ ions under fast atom bombardment conditions

The competitive formation of molecular ions M^+˙ and protonated molecules [M + H]⁺ under fast atom bombardment (FAB) conditions was examined using various kinds of organic compounds. The use of protic/hydrophilic matrices such as thioglycerol and glycerol resulted in relatively large values of the peak intensity ratio I([M + H]⁺)/I(M^+˙) compared with the use of relatively aprotic/hydrophobic matrices such as m-nitrobenzyl alcohol and o-nitrophenyl octyl ether. The change of matrix from thiol-containing such as thioglycerol and dithiothreitol to alcoholic such as glycerol and pentamethylene glycol increased the I([M + H]⁺)/I(M^+˙) ratio. Furthermore, the change of matrix increased the peak intensity ratio of the doubly charged ion [M + 2H]²⁺ to [M + H]⁺ in the FAB mass spectra of angiotensin I and gramicidin S. The addition of acids to the matrix solution increased the I([M + H]⁺)/I(M^+˙) ratio, although such an effect did not always occur. The acetylation of simple aniline compounds markedly increased the I([M + H]⁺)/I(M^+˙) ratio. It was concluded from these results that the hydrogen bonding interaction between hydroxyl groups(s) of the matrix and basic site(s) of analyte molecules in solution acts advantageously as a quasi-preformed state for [M + H]⁺ formation, and that the presence of significant proton acceptor(s) such as carbonyl group in analytes hinder the M^+˙ formation which may generally occur under FAB conditions. The formation of M^+˙ and [M + H]⁺ ions seemed to occur competitively, reflecting or according to the interaction or solvation states between the analyte and matrix molecules in solution and the structural characteristics of the analytes.     

Collisional activation of ions formed by [Li]+ ion attachment

Since no unimolecular fragmentation is observed with [M+Li]⁺ ions under normal operating conditions the collisional activation method was used to study the fragmentation behaviour of these ions. It was found that the liberation of the [Li]⁺ ion is a dominant process only with smaller molecules. In addition, direct bond cleavages and new types of rearrangement reactions lead to fragment ions in which the lithium is normally retained. The decomposition behaviour of [M+Li]⁺ ions represents an intermediate case between that of [M]+ ions and excited neutral molecules and is quite different from that of [M+H]⁺ ions.     

Comparative study of [Xe]+ and [Ar]+ bombardment in secondary ion mass spectrometry for bioorganic compounds

Secondary ion mass spectra obtained by [Xe]⁺ bombardment are compared with those obtained by [Ar]⁺ bombardment. Although [Ar]⁺ ions are commonly used as primary ions in secondary ion mass spectrometry for organic compounds, [Xe]⁺ ions seem better as primary ions because they give a larger sputtering yield for a metal substrate than [Ar]⁺ ions. Cationized molecular intensities of sucrose, raffinose and stachyose, and quasimolecular ion intensities of tuftsin and eledoisin related peptide are investigated using [Xe]⁺ and [Ar]⁺ bombardments. The observed molecular species are 2–4 times more intense for [Xe]⁺ bombardment than for [Ar]⁺ bombardment, although the secondary ion mass spectra are almost the same in both cases.     

The fragmentation of 5-phenyl-1,4-benzodiazepin-2-ones. Mechanism for the formation of [M ? H]+

The fragmentations under electron impact of 5-phenyl-1,4-benzodiazepin-2-ones are investigated with the aid of high resolution, metastable decompositions and deuterium labeling. Based on our data a mechanism for the formation of the [M – H]⁺ ion is proposed. It is shown that the [M – CHO]⁺ ion is probably formed by two different pathways. Data on two minor fragment ions give support to the structure proposed for the [M – CHO]⁺ ion.     

A new copper containing MALDI matrix that yields high abundances of [Peptide + Cu]+ ions

The dinuclear copper complex (α-cyano-4-hydroxycinnamic acid (CHCA) copper salt (CHCA)₄Cu₂), synthesized by reacting CHCA with copper oxide (CuO), yields increased abundances of [M + xCu − (x−1)H]⁺ (x = 1–6) ions when used as a matrix for matrix-assisted laser desorption ionization (355 nm Nd:YAG laser). The yield of [M + xCu − (x−1)H]⁺ (x = 1∼6) ion is much greater than that obtained by mixing peptides with copper salts or directly depositing peptides onto oxidized copper surfaces. The increased ion yields for [M + xCu − (x−1)H]⁺ facilitate studies of biologically important copper binding peptides. For example, using this matrix we have investigated site-specific copper binding of several peptides using fragmentation chemistry of [M + Cu]⁺ and [M + 2Cu − H]⁺ ions. The fragmentation studies reveal interesting insight on Cu binding preferences for basic amino acids. Most notable is the fact that the binding of a single Cu⁺ ion and two Cu⁺ ions are quite different, and these differences are explained in terms of intramolecular interactions of the peptide-Cu ionic complex.     

Mass spectrometry of steroid systems. XXIV–The origin of [M – 28]+ and [M – 43]+ ions in equilenin and its 14β-isomer

The formation of the [M? 43]⁺ ion in equilenin is due mainly to elimination of Me radical from the [M? CO]⁺ ion and, to a lesser extent, to CO loss from the [M? Me]⁺ ion. In 14β-isoequilenin the [M? CO]⁺ ion is absent, and the formation of [M? 43]⁺ occurs via the [M? Me]⁺ ion. This makes the determination of the mode of junction of the rings C and D in the equilenin series possible, using high resolution mass spectra, even when only one stereoisomer is available.     

Formation and fragmentation of the [M + Na]+ ion of glycosides in fast atom bombardment mass spectrometry

Positive-ion fast atom bombardment (FAB) mass spectra of flavonol and steroid glycosides with sodium chloride added showed well known characteristic features; of the appearance of [M + Na]⁺ peaks, disappearance of [M + H]⁺ peaks and a significant decrease in the peak heights of fragment ions. Compared with the features in the FAB mass spectra of crown ethers with addition of salt, and above features suggest a complexation between Na⁺ and the glycosides in matrix solution. The B/E-constant linked scanning technique was used to obtain structural information of the [M + Na]⁺ ion of the glycosides. The B/E spectra gave the daughter-ion peaks, suggesting that coordination of Na⁺ with the biosides and triosides occurs at the sugar moiety, whereas the coordination with the monoglycosides occurs at the aglycone moiety, except for monoglycosides in which the aglycone moiety does not contain significant oxygen functional groups such as OH and CO.     

Mass spectra of aliphatic dicarboxylic acids and their dimethyl esters: Cyclic structures for the [M − H2O]+˙ ions from the diacids and [M − MeOH]+˙ ions from the dimethyl esters

Methyl 2-oxocycIoalkane carboxylate structures are proposed lor the [M ? MeOH]^+˙ ions from dimethyl adipate, pimelate, suberate and azelate. This proposal is based on a comparison of the metastable ion mass spectra and the kinetic energy releases for the major fragmentation reaction of these species with the same data for the molecular ions of authentic cyclic β-keto esters. The mass spectra of α,α,α′,α′-d₄-pimelic acid and its dimethyl ester indicate that the α-hydrogens are involved only to a minor extent in the formation of [M ? ROH]^+˙ and [M ? 2ROH]^+˙ ions, while these α-hydrogens are involved almost exclusively in the loss of ROH from the [M ? RO˙]⁺ ions (R = H or CH₃). The molecules XCO(CH₂)₇COOMe (X = OH, Cl) form abundant ions in their mass spectra with the same structure as the [M ? 2MeOH]^+˙ ions from dimethyl azelate.     

C-C and C-H bond activation in the fragmentation of the [M + Ni]+ adducts of aliphatic amino acids

The major metal-containing species formed upon fast atom bombardment of amino acid/Ni⁺² mixtures is the [M + Ni]⁺ adduct, involving reduction of the Ni⁺² to the +1 oxidation state. By contrast, electrospray ionization of amino acid/Ni⁺² mixtures produces predominantly [Ni(M ? H)M]⁺; this species, on collisional activation, produces predominantly [M + Ni]⁺ by elimination of [M - H], presumably a carboxylate radical. The unimolecular fragmentation reactions occurring on the metastable ion time scale for the [M + Ni]⁺ adducts of a variety of α-amino acids have been recorded. The adducts with phenylalanine, α-aminoisobutyric acid and α-aminobutyric acid fragment by elimination of H₂O, H₂O + CO and, to a minor extent, by elimination of CO₂. These reactions are similar to those observed for the [M + Cu]⁺ adducts of α-amino acids. A reaction distinctive for the [M + Ni]⁺ adducts involves formation of the immonium ion RCH=NH ₂ ⁺ . By contrast, the [M + Ni]⁺ adducts with leucine, isoleucine, and norleucine show extensive metastable ion fragmentation by elimination of H₂, CH₄, C₂H₄, C₃H₆, and C₄H₈, with the relative importance of the different fragmentation channels depending on the configuration of the C₄H₉ side chain. These results are interpreted in terms of C-C and C-H bond activation of the C₄H₉ side chain by the Ni⁺. The adducts with valine and norvaline fragment in a fashion similar to the adduct with phenylalanine, except that minor elimination of C₃H₆ is observed.     

[M + 11]+˙ and [M + 11]−˙ ions in the nitrogen positive and negative ion chemical ionization mass spectra of aromatic amines

The N₂ negative ion chemical ionization (NICI) mass spectra of aniline, aminonaphthalenes, aminobiphenyls and aminoanthracenes show an unexpected addition appearing at [M + 11]^?˙. This addition is also observed in the N₂ positive chemical ionization (PCI) mass spectra. An ion at [M – 15]^? is found in the NICI spectra of aminoaromatics such as aniline, 1- and 2-aminonaphthalene and 1- and 2-aminoanthracene. Ion formation was studied using labeled reagents, variation of ion source pressure and temperature and examination of ion chromatograms. These experiments indicate that the [M + 11]^?˙, [M – 15]^?˙ and [M + 11]^+˙ ions result from the ionization of analytes altered by surface-assisted reactions. Experiments with ¹⁵N₂, [¹⁵N] aniline, [2,3,4,5,6-²H₅] aniline and [¹³C₆] aniline show that the [M + 11]^?˙ ion corresponds to [M + N – 3H]^?˙. The added nitrogen originates from the N₂ buffer gas and the addition occurs with loss of one ring and two amino group hydrogens. Fragmentation patterns in the N₂ PCI mass spectrum of aniline suggest that the neutral product of the surface-assisted reaction is 1,4-dicyanobuta-1,3-diene. Experiments with diamino-substituted aromatics show analogous reactions resulting in the formation of [M – 4H]^?˙ ions for aromatics with ortho-amino groups. Experiments with methylsubstituted aminoaromatics indicate that unsubstituted sites ortho to the amino group facilitate nitrogen addition, and that methyl groups provide additional sites for nitrogen addition.     

Origin of the [M − H]+ ion in flavanone

Studies of the genesis of the [M ? H]⁺ ion in flavanone and 2′-hydroxychalcone, performed with the aid of metastable decompositions and deuterium labelling, allow new structural notations to be postulated for the [M ? H]+ ions, which in turn provide evidence for the pathways in the [M ? H – ketene]+ fragmentation routes for these compounds.     

The [M?OH]+ ions of m- and p-ethylnitrobenzene: A common structure?

The structures of the [M? OH]⁺ ions of m- and pethylnitrobenzene have been compared by measurements of metastable ion spectra, collisional activation spectra, kinetic energy releases and critical energies for the formation of these ions and their subsequent decomposition. Normalized rates of fragmentation of metastable molecular ions and metastable [M? OH]⁺ ions have been compared for ion lifetimes up to 30 μs. The energy measurements fail to distinguish between the structures of the [M? OH]⁺ ions, but the normalized fragmentation rates and the collisional activation spectra show their structures to be different.     

Chemical ionization of fluorophenyl n-propyl ethers: Loss of propene from the metastable [M + D]+ ions

Chemical ionization (CI) mass spectrometry with the reagents D₂O, CD₃OD, and CD₃CN (given in order of increasing proton affinity) has been used to generate metastable [M + D]⁺ ions of a series of mono-, di-, and trifluorophenyl n-propyl ethers and analogs labeled with two deuterium atoms at the β position of the alkyl group. Loss of propene is the main reaction of the [M + D]⁺ ions, whereas dissociation with formation of propyl carbenium ions is of minor importance. The combined results reveal that the deuteron added in the CI process can be incorporated in the propene molecules as well as in the propyl carbenium ions. The extent to which the added deuteron is exchanged with the hydrogen atoms of the propyl group is markedly dependent on the position of the fluorine atom(s) on the ring and the exothermicity of the initial deuteron transfer. For 3-fluorophenyl n-propyl ether, exchange is not observed if D₂O is the CI reagent, and occurs only to a minor extent in the experiments with the CI reagents CD₃OD and CD₃CN. Similar results are obtained for the 3,5-difluoro- and 2,4,6-trifluorophenyl ethers, whereas significant exchange is observed prior to the dissociations of the [M + D]⁺ ions of the 4-fluoro- and 2,6-difluorophenyl n-propyl ethers, irrespective of the nature of the CI reagent. These results are discussed in terms of the occurrence of initial deuteron transfer either to the oxygen atom or the aromatic ring followed by formation of an ion/neutral complex of a fluorine-substituted molecule and a secondary propyl carbenium ion. Initial deuteron transfer to the oxygen atom is suggested to yield complexes that can react by exchange between the added deuteron and the hydrogen atoms of the original propyl group prior to dissociation. By contrast, initial deuteron transfer to the ring is suggested to lead to complexes that react further by loss of propene molecules containing only the hydrogen/deuterium atoms of the original propyl entity.     

Structural and substituent effects on [M]+. vs. [MH]+ formation in fast atom bombardment mass spectra of simple organic compounds

The peak intensity ratios of [M]^+. vs. [MH]⁺ were measured in the fast atom bombardment (FAB) mass spectra of readily available test compounds with 3-nitrobenzyl alcohol as the matrix. For simple aromatic amines, the ratio increases as the ionization energy of the substrate decreases. 4-Substituted benzophenones showed preferential formation of [MH]⁺ ions, regardless of the nature of the substituents. This is probably due to the fact that the benzophenoes have carbonyl groups which can form hydrogen bonds with the matrix molecule. The peak intensity ratio is roughly proportional to the Hammett σ^+. Among 4-substituted biphenyls, both bromo and chloro substituents afforded abnormally high peak intensity ratios. The effects of the substituents in these compounds are discussed semi-quantitatively in terms of the Hammett correlation and the hard and soft acids and bases principle. The mechanism of ion formation in FAB and chemical ionization (CI) ion sources appeared to be different because some of the compounds studied showed an intense [M]^+. peak with a relatively weak [MH]⁺ peak in FAB spectra but exhibited a strong [MH]⁺ peak in ordinary CI spectra.     

Metastable [C4H8O]+˙ ions: Additional decompositions via the [2-butanone]+˙ ion

The losses of methyl and ethyl through the intermediacy of the [2-butanone]⁺˙ ion are shown to be the dominant metastable decomposition of 14 of 19 [C₄H₈O]⁺˙ ions examined. The ions that decompose via the [2-butanone]⁺˙ structure include ionized aldehydes, unsaturated and cyclic alcohols and enolic ions. [Cyclic ether]⁺˙ [cyclopropylmethanol]⁺˙ and [2-methyl-1-propen-1-ol]⁺˙ ions do not decompose through ionized 2-butanone. The rearrangements of various [C₄H₈O]⁺˙ ions the the 2-butanone ion were investigated by means of deuterium labeling. Those pathways involve up to eight steps. Ions with the oxygen on the end carbon rearrange to a common structure or mixture of structures. Those ions which ultimately rearrange to the [2-butanone]⁺˙ ion then undergo oxygen shifts from the terminal to the second and third carbons at about equal rates. However, this oxygen shift does not precede the losses of water and ethylene. Losses of water and ethylene were unimportant for ions with the oxygen initially on the second carbon. Ionized n-butanal and cyclobutanol, but not other [C₄H₈O]⁺˙ ions, undergo reversible hydrogen exchange between the oxygen and the terminal carbon. Rearrangement of ionized n-butanal to the [cyclobutanol]⁺˙ ion is postulated.     

A mass spectrometric and ab initio study of the pathways for dehydration of simple glycine and cysteine-containing peptide [M+H]+ ions

The gas phase fragmentation reactions of the [M+H]⁺ and [M+H?H²O]⁺ ions of glycylglycine, glycylcysteine, N-acetylglycine, N-acetylcysteine, their corresponding methyl esters, as well as several other related model systems have been examined by electrospray ionization (ESI) tandem mass spectrometry (MS ⁿ ) using triple quadrupole and quadrupole ion trap mass spectrometers. Two discrete gas phase fragmentation pathways for the loss of water from glycine-containing peptides, corresponding to retro-Koch and retro-Ritter type reactions were observed. Two pathways were also observed for the loss of water from C-terminal cysteine-containing peptides: a retro-Koch type reaction and an intramolecular nucleophilic attack at the carbonyl of the amide bond by the cysteinyl side chain thiol. Various intermediates involved in these reactions, derived from the [M+H?H²O]⁺ ions of N-formylglycine and N-formylcysteine, were modeled using ab initio calculations at the MP2(FC)/6-31G*//HF/6-31G* level of theory. These calculations indicate that: (i) the retro-Koch reaction product is predicted to be more stable than the product from the retro-Ritter reaction for N-formylglycine, and (ii) the intramolecular nucleophilic attack product is preferred over the retro-Koch and retro-Ritter reaction products for N-formylcysteine. The results from these ab initio calculations are in good agreement with the experimentally determined ion abundances for these processes.