Benzamidinium d-glucuronate: Spectroscopic and structural elucidation

Benzamidinium d-glucuronate (1) crystallizes in the orthorhombic space group P2₁2₁2₁ and exhibits a 3 D network with molecules linked by moderate intermolecular hydrogen bonds (HNH…O_(solvent) 2.993 Å, HNH…OCO 2.894 Å, HNH…O_(cycle) 2.844 Å, OH…NH₂ 2.931 Å, OH…O_(solvent) 2.894, 2.924 and 2.715 Å (stronger)) with participation of cations, anions and solvent molecules. The IR-band assignment of carbohydrate moieties is elucidated by a comparison between the types and bond lengths of intermolecular interactions with participation of OH groups in d-glucuronate and linear polarized IR-(IR-LD) spectroscopic data. Experimental results are supported by theoretical ab initio calculations of benzamidinium cation and d-glucuronate anion.     

Cyclic oligomers (macroaldonolactones) from a protected d-galactonic acid monomer

Dicyclohexylcarbodiimide-promoted self-condensation of 2,3:4,5-di-O-isopropylidene-d-galactonic acid (3) led to the macrocyclic oligomeric cyclo[(2,3:4,5-di-O-isopropylidene-(1→6)-d-galactonate)₂] (4) and cyclo[(2,3:4,5-di-O-isopropylidene-(1→6)-d-galactonate)₃] (5), having, respectively, 14- and 21-membered rings. The macrocycles 4 and 5 were also synthesized by cyclization of the respective linear dimer 11 and trimer 14 ω-hydroxy acids precursors prepared by stepwise additions of 3. Compounds 4 and 5 are biomaterials that may be described as macrolactone-cyclodextrins.     

Stereoselective total synthesis of ophiocerin D from d-xylose

A stereoselective total synthesis of ophiocerin D is reported by a combination of a ‘chiron’ approach and an asymmetric synthesis, from d-xylose. Of the four stereogenic centers, the vic diols C3/C4 and C5/C6 were obtained by Sharpless asymmetric dihydroxylation and from d-xylose, respectively.     

Electro-oxidation of d-mannose on platinum, gold and nickel electrodes in aqueous medium

The oxidation of d-mannose is studied on platinum, gold and nickel in alkaline medium. The electro-reactivity of this compound and the rate determining step of the reactions were determined by cyclic voltammetry. Lead adatoms have important effect on the oxidation of d-mannose on platinum electrode. Five folder of increase in current densities was observed after the addition of 10⁻⁶ M Pb²⁺. Electrolyses carried out on upd-lead modified platinum, and gold electrodes show good conversion yields (75% and 80%, respectively) and reasonable selectivities towards mannonic acid. High amount of cleavage products were detected at the end of the electrolysis at nickel electrode. The reactivity-functional group relationship has been discussed considering the results of the electrolyses.     

Syntheses of l-glucosamine donors for 1,2-trans-glycosylation reactions

Two new l-glucosamine donors, that is pent-4-enyl 3,4,6-tri-O-acetyl-2-allyloxycarbonylamino-2-deoxy-β-l-glucopyranoside 16 and ethyl 3,4,6-tri-O-acetyl-2-allyloxycarbonylamino-2-deoxy-1-thio-β-l-glucopyranoside 21 were prepared in 12 steps from l-arabinose. The reaction pathway uses 3,4,6-tri-O-acetyl-l-glucal 5, and then 3,4,6-tri-O-acetyl-2-deoxy-2-iodo-α-l-mannopyranosyl azide 8 as intermediates. The latter, together with donors 16 and 21, were used for preparing l-glucosamine neoglycolipids.     

Syntheses and structural comparisons of two copper(II) complexes with the same formula having d-(+)- and d,l-1,2,2-trimethylcyclopentane-1,3-diamine ligands

Two five-coordinate copper(II) complexes, formulated as [Cu(L_a)₂Cl]BF₄ (1) and [Cu(L_b)₂Cl]BF₄ (2) having d-(+)-1,2,2-trimethylcyclopentane-1,3-diamine (L_a) and d,l-1,2,2-trimethylcyclopentane-1,3-diamine (L_b) ligands, have been synthesized and characterized. X-ray diffraction studies of 1 and 2 demonstrate that they crystallize in the different space groups (P2₁2₁2₁ for 1 and Pnma for 2), although they have identical unit cell volumes, due to the use of enantiomeric and racemic diamine ligands. One dimensional (1D) hydrogen-bond-sustained dimeric zigzag chains are formed by means of eight-membered N₂H₂CuBF₂ as well as 10-membered N₂H₄ClBF₂ hydrogen-bonded cycles. Thermal analyses for 1 and 2 are also described herein.     

Synthesis of enantiopure 2-C-methyl-d-erythritol-4-phosphate

The synthesis of enantiopure 2-C-methyl-d-erythritol-4-phosphate is disclosed. A 1,3-diol possessing a quaternary stereogenic centre, prepared stereoselectively from an acyclic tri-substituted alkene, has been utilized as a key intermediate.     

Carbohydrate pyrolysis mechanisms from isotopic labeling: Part 3. The Pyrolysis of d-glucose: Formation of C3 and C4 carbonyl compounds and a cyclopentenedione isomer by electrocyclic fragmentation mechanisms

The flash pyrolysis of d-glucose was investigated by the use of ¹³C labeling, in conjunction with GC/MS. Co-pyrolysis of uniformly labeled and unlabeled d-glucose established the extent of unimolecular formation of each of the pyrolysis products. A complete set of singly labeled d-glucose isotopologs was used to determine the origin of specific carbons within each of the pyrolysis products. The results were compared with the expected labeling patterns that arise when the cyclic Grob 1,3-diol fragmentation and the tandem alkaline pinacol rearrangement/retro-aldol fragmentation (TAPRRAF) discovered from the pyrolysis of glycerin are used to initiate breakage of the six-carbon chain of d-glucose. The most promising rationalizations provided by this exercise are presented herein, for the formation of six C₃ and eight C₄ acyclic carbonyl-containing pyrolysis products, and for 3-cyclopentene-1,2-dione.     

Enthalpies of solution of l-threonine in a (water + alcohol) mixture at 298.15 K

The enthalpies of solution of l-threonine in the (water + methanol), (water + ethanol), (water + n-propanol), and (water + i-propanol) mixtures, with an alcohol content up to 0.4 mol fractions, have been measured calorimetrically at T = 298.15 K. The standard enthalpies of solution and transfer of l-threonine from water to an aqueous alcohol have been calculated. The effect of the structure properties of the mixed solvent on the specified enthalpy characteristics of l-threonine is discussed. The enthalpy coefficients of pairwise interactions between amino acid and alcohol molecules have been computed. It has been found that these coefficients become increasingly positive in the methanol, ethanol, n-propanol, and i-propanol consequence. A comparative analysis of the thermodynamic characteristics of dissolution of l-threonine and some other amino acids (glycine, l-alanine and l-valine) in the mixtures studied has been made.     

Separation and determination of l-tyrosine and its metabolites by capillary zone electrophoresis with a wall-jet amperometric detection

A method of capillary electrophoresis with wall-jet amperometric detection (AD) has been developed for separation and determination of l-tyrosine (Tyr) and its metabolites, such as Tyramine (TA), p-hydroxyphenylpyruvic (pHPP), homogentisic acid (HGA) and some dipeptides containing Tyr, such as Tyr-Gly-Gly (YGG), Tyr-Arg (YR) and Tyr-d-Arg (Y-d-R). A carbon disk electrode was used as the working electrode and the optimal detection potential was 1.00 V (versus Ag/AgCl). At 18 kV of applied voltage, the seven compounds were completely separated within 20 min in 110 × 10⁻³ mol/L Na₂HPO₄–NaH₂PO₄ buffer (pH 7.10) containing 3 × 10⁻³ mol/L β-cyclodextrin (β-CD). Good linear relationship was obtained for all analytes and the detection limits of seven analytes were in the range of 0.95–4.25 ng/mL. The proposed method has been applied to examine the metabolic process of l-tyrosine in rabbit's urine.     

Antitumor triterpene saponins from Anemone flaccida

A new triterpenoid saponin, 3-O-[（6′-butyryl）-β-D-glucopyranosyl]-28-O-[α-L-rhamnopyranosyl-（1→4）-β-D-glucopyranosyl-（1→6）-β-D-glucopyranosyl] oleanolic acid, as well as three known triterpenoid saponins were isolated from the rhizomes of Anemone flaccida. Their structures were elucidated by spectroscopic methods. These compounds showed significant antitumor activities.     

DNA binding and oxidative cleavage activity of ternary (l-proline)copper(II) complexes of heterocyclic bases

Ternary copper(II) complexes [Cu(l-pro)(B)(H₂O)](NO₃) (1, 2) where l-pro = l-proline, B is a N,N-donor heterocyclic base, viz. 2,2′-bipyridine (bpy, 1), 1,10-phenanthroline (phen, 2), are synthesized, characterized, and their DNA binding and cleavage activity studied. The bpy complex (1) is structurally characterized by single-crystal X-ray crystallography. The complexes show the presence of a distorted square-pyramidal (4 + 1) CuN₃O₂ coordination geometry. Complex [Cu(l-pro)(bpy)(H₂O)](NO₃) (1) crystallizes in the triclinic space group P1 with unit cell parameters: a = 7.082(3) Å, b = 10.483(5) Å, c = 11.581(5) Å, α = 89.700(7)°, β = 83.488(8)°, γ = 84.109(8)° and V = 849.7(7) Å³. The one-electron paramagnetic complexes display a d–d band near 600 nm in water and show a cyclic voltammetric response due to Cu(II)/Cu(I) couple near 0.1 V (versus SCE) in Tris–HCl buffer–0.1 M KCl. Binding interactions of the complexes with calf thymus (CT) DNA have been investigated by emission, absorption, viscosity and DNA thermal denaturation studies. The phen complex displays significant binding propensity to the CT DNA giving an order: 2 (phen)  1 (bpy). The bpy complex does not show any apparent binding to the DNA and hence poor cleavage efficiency. Complex 2 shows efficient oxidative cleavage of SC-DNA in the presence of 3-mercaptopropionic acid (MPA) involving hydroxyl radical species as evidenced from the control data showing inhibition of DNA cleavage in the presence of DMSO and catalase.     

Synthesis of tadalafil (Cialis) from l-tryptophan

The first synthesis of tadalafil 1 (Cialis) from l-tryptophan is described. The title compound 1 was synthesized via seven steps from l-tryptophan methyl ester hydrochloride in 42.3% overall yield. Two characteristic steps involved in this synthesis are the base-catalyzed epimerization of the C-3 position of (1S,3S)-1,2,3-trisubstituted-tetrahydro-β-carboline 3a and the acid-catalyzed epimerization of the C-1 position of (1S,3R)-1,3-disubstituted-tetrahydro-β-carboline 5. The (S)-configurations at C-1 and C-3 were inverted to (R)-configurations during the epimerization reactions. The base-catalyzed epimerization of C-3 of (1S,3S)-1,2,3-trisubstituted-tetrahydro-β-carbolines 3a–3e was also studied in detail.     

Carbon- and nitrogen-centered radicals produced from l-lysine by radiation-induced oxidation: A pulse radiolysis study

Radical species generated from the reactions of a basic amino acid, l-lysine (Lys), with hydroxyl radicals (OH) and sulfate radical anion () have been detected by the method of pulse radiolysis. On the basis of electron transfer reactivities toward tetranitromethane (TNM), it was demonstrated that reducing carbon-centered radicals are generated as a result of hydrogen abstraction from CH₂ of Lys with a G-value of 1.9 × 10⁻⁷ mol J⁻¹. On the other hand, direct oxidation of l-Lys by formed a transient species with different spectroscopic properties, most likely, the ε-N-centered Lys radical.     

Heterogeneous interaction between zwitterions of some l-α-amino acids and ethanol molecule in water at 298.15 K

Dissolution enthalpies of l-α-aminobutyric acid, l-α-isoleucine, l-α-serine, l-α-threonine and l-α-cysteine in water and aqueous ethanol solutions have been measured by calorimetry at a temperature of 298.15 K. The obtained results were used to calculate the enthalpic heterogeneous pair interaction coefficients between zwitterions of amino acids and a molecule of ethanol in water. These values were interpreted in the terms of the hydrophobic or hydrophilic effects of the side chains of amino acids on their interactions with a polar molecule of ethanol in water.     

A new flavone glycoside from Selaginella moellendorffii Hieron.

From the ethanol extract of Selaginella moellendorffii Hieron., a new flavone O-glycoside and three known flavone C-glycosides have been isolated and identified as 5-carboxymethyl-4′-hydroxyflavone-7-O-β-D-glucopyranoside 1, 6,8-di-C-β-D-glueopyranosylapigenin 2, 6-C-[3-D-glucopyranosyl-8-C-β-D-xylopyranosyl apigenin 3, 6-C-B-D-xylopyranosyl-8-C-β-glucopyranosylapigenin 4, respectively. Their structures were elucidated by spectroscopic methods.     

Reaction between l-cysteine and 10-methylphenothiazine cation radical released from droplet-modified electrodes

The electrochemical oxidation of 10-methylphenothiazine (PMe) dissolved in 1,2-trans-dibromocyclohexane oil droplets immobilised on a basal plane pyrolytic graphite (BPPG) electrode and bathed by an aqueous electrolyte is a one-electron quasi-reversible process which occurs with the expulsion of the electro-generated cation radical from the oil phase. In the presence of l-cysteine in the aqueous phase, the electro-released cation mediates the redox catalytic oxidation of the thiol. The peak catalytic current is observed to increase linearly with increasing cysteine concentration over the range analysed (10–100 mM).     

Molecular recognition capability and rheological behavior in solution of novel lactone-based glycopolymers

Novel glycopolymers have been prepared from ethylene–vinyl alcohol copolymers, EVOH. For that purpose, three distinct aminosaccharides (N-(4-aminobutyl)-d-gluconamide (NABG), N-(4-aminobutyl)-O-β-d-galactopyranosyl-(1 → 4)-d-gluconamide (NABL) and N-(4-aminobutyl)-O-β-d-glucopyranosyl-(1 → 4)-d-gluconamide (NABM) have been synthesized. The previous functionalization of these EVOH copolymers is mandatory to activate their hydroxyl reactivity before the subsequent coupling reaction with the aminosaccharides. The activation with carboxylic acid groups by reaction with phthalic anhydride has been chosen in the current investigation because of its almost quantitative yield and the subsequent high modification extent reached (>60%). The glycopolymers that turned out water-soluble (i.e., those based on NABL and NABM) have shown a reversible network formation unusually described in glycopolymers. In addition, their capability to interact with lectins, particularly Concanavalin A and Ricinus communis Agglutinin, has confirmed the specificity of lectin recognition in these glycopolymers.     

Diastereoselective enzymatic preparation of acetylated pentofuranosides carrying free 5-hydroxyl groups

Methyl 3-O-acetyl-2-deoxy-α-d-ribofuranoside, 1,3-di-O-acetyl-2-deoxy-α-d-ribofuranose and 1,2,3-tri-O-acetyl-α-d-arabinofuranose were diastereoselectively prepared (de = 100%) from anomeric mixtures of the corresponding 5-acetylated compounds through Candida antarctica B lipase (CAL B)-catalysed alcoholysis.     

EPR and optical absorption studies of Cr ions in d-gluconic acid monohydrate

EPR studies are carried out on Cr³⁺ ions doped in d-gluconic acid monohydrate (C₆H₁₂O₇·H₂O) single crystals at 77 K. From the observed EPR spectra, the spin Hamiltonian parameters g, |D| and |E| are measured to be 1.9919, 349 (×10⁻⁴) cm⁻¹ and 113 (×10⁻⁴) cm⁻¹, respectively. The optical absorption of the crystal is also studied at room temperature. From the observed band positions, the cubic crystal field splitting parameter Dq (2052 cm⁻¹) and the Racah interelectronic repulsion parameter B (653 cm⁻¹) are evaluated. From the correlation of EPR and optical data the nature of bonding of Cr³⁺ ion with its ligands is discussed.