Light harvesting and efficient energy transfer in a boron-dipyrrin (BODIPY) functionalized perylenediimide derivative

[reaction: see text] Click chemistry has been successfully applied in the synthesis of a bay region tetraboron-dipyrrin (BODIPY) appended perylenediimide (PDI). This light-harvesting molecule presents a large cross section for the absorption of light in the visible region. Excitation energy is efficiently channeled to the perylenediimide core. This novel antenna system is the first demonstration of the efficiency of energy transfer in a BODIPY-PDI bichromophoric system and appears to be highly promising for the design and synthesis of similar dendritic structures.     

Hydrogen-bonded oligo(p-phenylenevinylene) functionalized with perylene bisimide: self-assembly and energy transfer

We describe the synthesis, supramolecular ordering on surfaces and in solution, and photophysical characterization of OPV4UT-PERY, an oligo(p-phenylenevinylene) (OPV) with a covalently attached perylene bisimide moiety. In chloroform, the molecule forms dimers through quadruple hydrogen bonding of the ureido-s-triazine array. This is supported by scanning tunneling microscopy (STM) studies, which reveal dimer formation at the liquid (1,2,4-trichlorobenzene)/solid (graphite) interface. Moreover, contrast reversal in bias-dependent STM imaging provides information on the ordering and different electronic properties of the oligo(p-phenylenevinylene) and perylene bisimide moieties. In dodecane, the molecule self-assembles into H-type aggregates that are still soluble as a result of the hydrophobic shell formed by the dodecyloxy wedges. The donor-acceptor molecule is characterized by efficient energy transfer from the photoexcited OPV to the perylene bisimide. Mixed assemblies with analogous OPVs lacking the perylene bisimide unit have been prepared in dodecane solution and energy transfer to the incorporated perylene bisimides has been studied by fluorescence spectroscopy.     

Artificial Light-Harvesting Antennae: Singlet Excitation Energy Transfer from Zinc Chlorin Aggregate to Bacteriochlorin in Homogeneous Hexane Solution

Abstract— Zinc chlorins possessing 3¹-hydroxyl and 13¹-carbonyl groups self-assemble in nonpolar solvents, such as hexane, in a manner similar to bacteriochlorophyll c in the chlorosomes of green photosynthetic bacteria. Visible absorption and steady-state fluorescence measurements of zinc chlorin aggregates containing a small amount of the bacteriochlorin-zinc chlorin dyad molecules showed that singlet excitation energy transfer from the zinc chlorin aggregate to the bacteriochlorin moiety of the coaggre-gated dyad occurs in the homogeneous solution. In the coaggregated dyad, the bacteriochlorin moiety plays the role of an efficient energy trap and the chlorin moiety the role of an anchor to the donor aggregate. The artificial assembly thus mimics the structure and function of natural chlorosomes and can be considered as the first in vitro supramolecular light-harvesting antenna.     

Enantioselective Light Harvesting with Perylenediimide Guests on Self‐Assembled Chiral Naphthalenediimide Nanofibers

Self‐assembling molecular systems often display amplified chirality compared to the monomeric state, which makes the molecular recognition more sensitive to chiral analytes. Herein, we report the almost absolute enantioselective recognition of a chiral perylenediimide (PDI) molecule by chiral supramolecular nanofibers of a bichromophoric naphthalenediimide (NDI) derivative. The chiral recognition was evaluated through the Förster resonance energy transfer (FRET) from the NDI‐based host nanofibers to the guest PDI molecules. The excitation energy was successfully transferred to the guest molecule through efficient energy migration along the host nanofiber, thus demonstrating the light‐harvesting capability of these hybrid systems. Furthermore, circularly polarized luminescence (CPL) was enantioselectively sensitized by the guest molecule as the wavelength band and sign of the CPL signal were switched in response to the chiral guest molecule.     

Synthesis and characterization of long perylenediimide polymer fibers: from bulk to the single-molecule level

The synthesis and characterization of perylenediimide polyisocyanides is reported. In addition to short oligomers, our synthetic approach results in the formation of extremely long, well-defined, and rigid perylenediimide polymers. Ordering and close-packing of the chromophores in these long polymers is guaranteed by attachment to a polyisocyanide backbone with amino acid side chains. Hydrogen bonding interactions between those groups stabilize and rigidify the helical polymer structure. The rodlike nature of the synthesized long perylenediimide pendant polyisocyanides as well as the helical arrangement of the chromophores is demonstrated by means of atomic force microscopy. Remarkably, polymer fibers up to 1 mum in length have been visualized, containing several thousands of perylenediimide molecules. Circular dichroism spectroscopy reveals the chiral organization of the chromophore units in the polymer, whereas absorption and emission measurements prove the occurrence of excited-state interactions between those moieties due to the close packing of the chromophore groups. However, an intricate optical behavior is encountered in bulk as a result of the coexistence of short oligomers and long polymers of perylenediimide, a situation subsequently uncovered by means of single-molecule experiments. Individual long helical perylenediimide polyisocyanides exhibit a typical red-shifted fluorescence spectrum, which, together with depolarized emission continuously decreasing in time, demonstrate that fluorescence arises from multiple excimer-like species in the polymer. Upon continuous irradiation of these long polymers, a fast decay in fluorescence lifetime is observed, a situation explained by photoinduced creation of quenching sites. Radical/ion formation by intramolecular electron transfer between close-by perylenediimide moieties is the most probable mechanism for this process. Appropriate control of the electron-transfer process might open the possibility of applying these polymers as perylenediimide-based supramolecular nanowires.     

Sub-100 fs charge transfer in a novel donor-acceptor-donor triad organized in a smectic film

Ultrafast transient absorption spectroscopy is performed on a novel donor-acceptor-donor triad made of two identical bisthiophene derivatives as electron donors and a central perylenediimide moiety as electron acceptor. The triad is extended at both ends by covalently bound siloxane chains that confer self-organisation into thin smectic films at ambient temperature. When diluted in chloroform, selective excitation of the donor moiety leads to resonance energy transfer within 130 fs to the acceptor moiety, followed by the formation of a charge transfer (CT) state in ~3 ps. The CT state recombines entirely on a 55 ps time scale. In the liquid crystal films, excitonic intermolecular coupling leads to significant changes in the dynamics. Most remarkably, ultrafast intra- and intermolecular CT state formation occurs in about 60 fs, i.e. on a time scale comparable to electronic coherence times. While the intra-molecular CT states recombine on the same time scale as in solution or even faster, inter-molecular CT states live for about 1 ns. Last, triplet states of the perylenediimide moiety dominate the differential absorption after ~1 ns. We anticipate that the fast recombination of intra-molecular CT states and the triplet state formation may severely limit the photo-current in these materials.     

Light-harvesting organogel based on tris(phenylisoxazolyl)benzene

A novel light-harvesting organogel based on tris(phenylisoxazolyl)benzene, 1, was developed. A pyrene derivative, 2, possessing four phenylisoxazole substituents, was synthesised as an energy acceptor. The electronically excited-state energy of 1 was transferred to a small portion of 2 in the gel state, whereas the photo-induced energy transfer was not observed in solution. The coassembled structures of 1 and 2, formed in the decalin gel, exhibited light-harvesting behaviour. The study on the fluorescence quantum yield revealed that one molecule of 2 accepts the excited-state energy from approximately eight molecules of 1. Time-resolved fluorescence decay experiments revealed that the fluorescence resonance energy transfer is dominant in the energy transfer process in the gel state.     

Chemoenzymatic synthesis of a bifunctionalized cellohexaoside as a specific substrate for the sensitive assay of cellulase by fluorescence quenching

A new bifunctionalized cellohexaose derivative was synthesized as a specific substrate for continuous assay of cellulases by resonance energy transfer. This cellohexaoside has a naphthalene moiety (EDANS) as a fluorescent energy donor at the reducing end and a 4-(4'-dimethylaminobenzeneazo)-benzene derivative as an acceptor chromophore at the non-reducing end. The key steps for the preparation of the target molecule involved transglycosylation reactions of cellobiosyl and cellotetraosyl fluoride donors onto cellobiosyl acceptors catalysed by the E197A mutant of cellulase Cel7B from Humicola insolens. Upon digestion with various cellulases, the energy transfer was disrupted and an increase of fluorescence was observed.     

A molecular modeling study of complex formation and self-aggregation behavior of a porphyrin–β-cyclodextrin conjugate

This paper reports a molecular modeling study of complex formation and aggregation behavior of a supramolecular system comprising three different moieties forming two distinct molecules. One molecule is a phenol derivative of porphyrin conjugated to a macrocyclic oligosaccharide, β-cyclodextrin (β-CD), and the other is 1-adamantanol (ADM). The inclusion complex of the latter molecule with the porphyrin–β-cyclodextrin (β-CD) conjugate, and the dimeric aggregates of the conjugate both in the presence and in the absence of the guest are investigated through molecular mechanics and molecular dynamics methods in vacuo, since the systems are scarcely soluble in polar solvents. In this way, we can find the most likely geometry of the complexes or aggregates and characterize the competitive inclusion behavior of ADM and of a porphyrin phenol within the β-CD cavity in terms of the various energy contributions stabilizing the resulting aggregates and/or inclusion complexes.     

Folding and unfolding movements in a [2]pseudorotaxane

A new dibenzo[24]crown-8 derivative (1) was synthesized and functionalized with aromatic moieties such as naphthalene and coumarin units. These two fluorophores are known to form an effective FRET (Forster resonance energy transfer) pair, and this formed the basis for the design of this host crown ether derivative. Results of the steady-state and time-resolved fluorescence studies confirmed the resonance energy transfer between the donor naphthalene moiety and acceptor coumarin fragment, while NMR spectra and computational studies support a folded conformation for the uncomplexed crown ether 1. This was found to form an inclusion complex, a [2]pseudorotaxane type with imidazolium ion derivatives as the guest molecules with varying alkyl chain lengths ([C(4)mim](+) or [C(10)mim](+)). The host crown ether (1) tends to adopt an open conformation on formation of the interwoven inclusion complex (1·[C(4)mim](+) or 1·[C(10)mim](+)). This change in conformation, from the folded to a open one, was predicted by computational as well as (1)H NMR studies and was confirmed by single crystal X-ray structure for one (1·[C(4)mim](+)) of the two inclusion complexes. The increase in the effective distance between the naphthalene and coumarin moieties in the open conformation of these inclusion complexes was also supported by the decrease in the effective FRET process that was operational between naphthalene and coumarin moieties in the free molecule (1). Importantly, this inclusion complex formation was found to be reversible, and in the presence of a stronger base/polar solvent, such as triethyl amine/DMSO, the deprotonation/effective solvation of the cationic imidizolium ions ([C(4)mim](+) or [C(10)mim](+)) resulted in decomplexation or dethreading with restoration of the original emission spectra for 1, which signifies the subsequent increase in the FRET process. Thus we could demonstrate that a molecular folding-unfolding type of movement in the crown ether derivative could be induced by chemical input as an imidazolium ion.     

A Terminal Iridium Oxo Complex with a Triplet Ground State

A terminal iridium oxo complex with an open‐shell (S=1) ground state was isolated upon hydrogen atom transfer (HAT) from the respective iridium(II) hydroxide. Electronic structure examinations support large spin delocalization to the oxygen atom. Selected oxo transfer reactions indicate the ambiphilic reactivity of the iridium oxo moiety. Calorimetric and computational examinations of the HAT revealed a bond dissociation free energy for the IrO?H bond that is sufficient for hydrogen atom abstraction towards C?H bonds and small contributions from entropy and spin–orbit coupling to the HAT thermochemistry.     

Synthesis of cyclic dienamide using ruthenium-catalyzed ring-closing metathesis of ene-ynamide

Ring-closing metathesis of ene-ynamide, which has alkene and ynamide moieties in a molecule, using a second-generation ruthenium carbene complex produced nitrogen-containing heterocycles, which have a dienamide moiety, in high yields. Diels-Alder reaction of the cyclized product with dienophile proceeded smoothly to give an indole or quinoline derivative in high yield.     

Gradient shape-persistent pi-conjugated dendrimers for light-harvesting: synthesis, photophysical properties, and energy funneling

A new class of pi-conjugated dendrimers G0, G1, and G2 was developed through a double-stage divergent/convergent growth approach, in which 5,5,10,10,15,15-hexahexyltruxene was employed as the node and oligo(thienylethynylene)s (OTEs) with different lengths as the branching moieties. The dendrimers were fully characterized by (1)H and (13)C NMR, elemental analysis, gel permeation chromatography, and MALDI-TOF MS. Also, by using atomic force microscopy, it was observed that dendrimer G2 laid nearly flat on the mica surface as a single molecule. Dynamic light scattering results showed that the molecule retained its relatively flat shape in solution. To our best knowledge, dendrimer G2, with a radius approaching 10 nm and a molecular weight of 27 072 Da, was the largest among reported second generation dendrimers. The energy gradient in G2 was constructed by linking OTEs of increasing effective conjugation lengths from the dendritic rim to the core. The intramolecular energy transfer process was studied using steady-state UV-vis absorption and photoluminescent spectroscopies, as well as time-resolved fluorescence spectroscopy. Our structurally extended dendrimers showed an excellent energy funneling ability (their energy transfer efficiencies were all over 95%). All results demonstrate that these dendrimers are promising candidates as light-harvesting materials for optoelectronic devices.     

A B3LYP study on the mechanism of second H2O formation in a fully reduced cytochrome c oxidase

The mechanism of second H₂O formation in fully reduced cytochrome c oxidase is examined by sequential additions of one electron and two protons to a [Fe(IV)O, Cu(II)] compound II, which is the final intermediate of first H₂O formation. It is found that the addition of one electron induces the concerted proton–electron transfer from the Cu_B to FeO moieties with no energy barriers. The H₂O molecule coordinating to the Cu atom is a key molecule for the proton transfer from the Cu_B moiety to the FeO and/or Fe–OH moieties. It is also found from the results in previous and the present works that one can realize the reduction process of dioxygen by fully reduced cytochrome c oxidase.     

Mimicking the Energy Funnel of the Photosynthetic Unit Using a Dendrimer-Dye Supramolecular Assembly

Photosynthesis involves light-harvesting complexes where an array of antenna pigment channels the absorbed solar energy to the reaction centre of a photosystem. This work reports a supramolecular dendrimer-dye assembly that mimics the natural light-harvesting mechanism. A dendrimeric molecule based on two-fluorophores has been constructed with three coumarin units at the end of three long arms and a 7-diethylaminocoumarin unit at the interior. The molecule self-aggregates in water into spherical micelles, which can encapsulate a rose-bengal dye (RB). On excitation, peripheral coumarin units shuttled the energy to the loaded RB dye reaction center via a two-step cascade resonance energy transfer (RET). The energy absorbed in the periphery is funnelled efficiently, resulting in a strong emission from the dye that resembles an energy funnel. The energy transfer cascade has been studied with both steady-state and time-resolved fluorescence spectroscopy. Molecular dynamics simulations of the self-assembled aggregates in water were also in agreement with the experimental observations.     

Sugar Amphiphiles as Revealing Dopants for Induced Chiral Nematic Lyotropic Liquid Crystals

The existence of phase chirality in lyotropic liquid crystals still raises questions. The mechanisms behind the transfer of chirality throughout the long-range orientational order are not yet obvious. Guest/host systems with chiral dopants in achiral host phases offer the capability of systematic investigations. We demonstrate that the large amount of accessible sugar amphiphiles exhibits remarkable structure/property relations. Their helical twisting power HTP increases strongly with the number of sugar units of a dopant molecule. The spatial range of the chirality information reaching from a chirally doped micelle to adjacent aggregates is essential for the development of phase chirality. The induced twist of the lyotropic nematic host phase is highly sensitive to small changes of the sugar type (e.g., galacto- to glucopyranose). Depending on the nature of the host phase, either the alpha- or the beta-linkage of the sugar to the hydrophobic moiety of the sugar dopant results in larger HTP values. We propose that our amphiphilic sugar derivatives act like antennae to transfer chirality information. Their effectiveness as chiral dopants is due to a hydrophobic anchoring within the micelles and an extension of their chiral moiety far into the intermicellar region. The chirality transfer works especially well if the hydrophilic and chiral sugar moieties are oriented toward a neighboring micelle in the direction of the helix axis. Copyright 2001 Academic Press.     

Carbazole-based organogel as a scaffold to construct energy transfer arrays with controllable fluorescence emission

A diaryldiketopyrrolopyrrole derivative functionalized with phenothiazine moieties (DPPP) was synthesized and introduced into the ordered 4-(3,6-di-tert-butyl-9H-carbazol-9-yl)benzamide (TBCB) organogel system. It was found that TBCB-based gel became a scaffold to make DPPP molecules line up along the gel fibers, resulting in new self-assembled arrays, whose XRD patterns were quite different from those of the neat TBCB gel and DPPP crystal. In the composite gel, the occurrence of a partial energy transfer from the excited light-harvesting antenna of TBCB to the DPPP acceptor was confirmed on the basis of time-dependent and time-resolved fluorescence investigations. Remarkably, the composite gel could emit intense red light or purplish white light by tuning the excitation wavelength. Such ordered soft materials with color-tunable emission may possess potential applications in sensor and photonic devices.     

Molecular arrangement and assembly guided by hydrophobic cavities inside DNA

DNA is a unique yet useful material to organize nanoscale molecular arrays along the helix axis. In this study, we demonstrate a useful approach for creating molecular arrays inside a double helical DNA. Our approach is based on a host-guest system. Introducing abasic sites into DNA afforded a hydrophobic cavity that serves as a host. A planar aromatic molecule (cationic perylenediimide, PDI) was used as the guest molecule. In an aqueous solution, the PDI molecules tend to aggregate with themselves due to the strong hydrophobicity. In the presence of DNA with the cavity, the binding of the PDI was found to site-specifically occur in the hydrophobic cavity. The unique assembly and arrangement for more than two PDI molecules was achieved by controlling the sizes and positions of the cavities. Our approach would provide a simple and convenient way to construct one-dimensional aromatic arrays in DNA.     

Electroactive supramolecular self-assembled fibers comprised of doped tetrathiafulvalene-based gelators

New electroactive supramolecular fibers have been formed by self-assembly of the derivatives of tetrathiafulvalene (TTF) in liquid crystals. These derivatives are designed and prepared by introducing the TTF moiety to the scaffold derived from amino acids such as L-isoleucine whose derivatives function as organogelators. These TTF-based gelators form stable fibrous aggregates in liquid crystals. These fibers are the first example of hydrogen-bonded one-dimensional aggregates having electroactive moieties whose electrical conductivities were measured after doping. Their electronic states have also been characterized by spectroscopic methods. Unidirectionally aligned fibers are formed in the oriented liquid crystal solvents on the rubbed polyimide surface for further functionalization of the fibers.     

Comparative study of the energy transfer kinetics in artificial BChl e aggregates containing a BChl a acceptor and BChl e-containing chlorosomes of Chlorobium phaeobacteroides

Chlorosomes are the light-harvesting organelles of green bacteria, containing mainly special bacteriochlorophylls (BChls) carrying a 3(1)-hydroxy side chain. Artificial aggregates of BChl c, d, and e have been shown to resemble the native chlorosomes in many respects. They are therefore seen as good model systems for understanding the spectroscopic properties of these antenna systems. We have investigated the excitation energy transfer in artificial aggregates of BChl e, containing small amounts of BChl a as an energy acceptor, using steady-state and time-resolved fluorescence. Global analysis of the kinetic data yields two lifetimes attributable to energy transfer: a fast one of 12-20 ps and a slower one of approximately 50 ps. For comparison, BChl e-containing native chlorosomes of Chlorobium phaeobacteroides and chlorosomes in which the energy acceptor had been degraded by alkaline treatment were also studied. A similar behavior is seen in both the artificial and the natural systems. The results suggest that the artificial aggregates of BChls have a potential as antenna systems in future artificial photonic devices.