s-四嗪-水簇复合物的理论研究

用量子化学B3LYP方法和6-31＋＋G**基函数研究了s-四嗪-水簇复合物基态分子间相互作用, 并进行了构型优化和频率计算, 分别得到无虚频稳定的s-四嗪-(水)₂复合物、s-四嗪-(水)₃复合物和s-四嗪-(水)₄复合物6个、9个和12个. 复合物存在较强的氢键作用, 复合物结构中形成一个N…H—O氢键并终止于O…H—C氢键的氢键水链构型最稳定. 经基组重叠误差和零点振动能校正后, 最稳定的1∶2, 1∶3和1∶4(摩尔比)复合物的结合能分别是41.35, 70.9和 94.61 kJ/mol. 振动分析显示氢键的形成使复合物中水分子H—O键对称伸缩振动频率减小(红移). 研究表明N…H键越短, N…H—O键角越接近直线, 稳定化能越大, 氢键作用越强. 同时, 用含时密度泛函理论方法在TD-B3LYP/6-31＋＋G**水平计算了s-四嗪单体及其氢键复合物的第一¹(n, p*)激发态的垂直激发能.     

1,2,4-三氮杂苯-(H2O)n复合物氢键相互作用的密度泛函理论研究

用密度泛函理论方法在B3LYP／6—31 G**水平上对1，2，4-三氮杂苯-(H2O)n(n=1，2，3)氢键复合物的基态进行了结构优化和能量计算，结果表明复合物之间存在较强的氢键作用，所有稳定复合物结构中形成一个N…H--O氢键并终止于弱O…H—C氢键的氢键水链的构型最稳定．同时，用含时密度泛函理论方法(TD—DPT)在TD—B3LYP／6—31 G**水平上计算了1,2，4-三氮杂苯单体及其氢键复合物的单重态第-1(n，π*)垂直激发能．     

三氮杂苯-水氢键复合物的结构与性质

使用密度泛函理论B3LYP方法对三氮杂苯-水氢键复合物的基态结构与相互作用进行理论研究. 结果表明1,2,3-三氮杂苯-水, 1,2,4-三氮杂苯-水和1,3,5-三氮杂苯-水复合物基态分别具有Cs, Cs和C₁对称性和强的氢键相互作用, 经基组重叠误差和零点振动能校正后的相互作用能分别为–17.83, –17.38和–13.55 kJ/mol. 三氮杂苯-水复合物中, N∙∙∙H—O氢键的形成使水的H—O对称伸缩振动频率明显红移. 同时使用含时密度泛函理论研究了三氮杂苯单体及其与水形成的氢键复合物的第一¹(n, π^*)激发态的垂直激发能.     

二氮杂苯－水氢键复合物结构性质的理论研究

使用密度泛函理论B3LYP方法和从头算MP2方法优化二氮杂苯－水复合物的基态氢键结构和相互作用能的计算。结果表明，邻二氮杂苯－水，间二氮杂苯－水，对二氮杂苯－水复合物具有强的N∙∙∙H─O氢键相互作用，经基组重叠误差和零点能校正后的氢键相互作用能分别为-20.99, -16.73 和-15.31 kJ/mol，氢键的形成使水的H─O对称伸缩振动频率明显红移（减小）。自然键轨道NBO分析显示，氢键的形成，分子间电荷转移分别为0.0316 e，0.0255 e 和0.0265 e。另外，使用含时密度泛函理论TD-DFT (TD-B3LYP)方法计算了二氮杂苯单体与氢键复合物的第一单重态(n, p^*)激发态的垂直激发能。     

4-羟甲基吡啶－水红移氢键的密度泛函理论研究

使用密度泛函理论B3LYP方法和6-311++G**基函数对4-羟甲基吡啶与水形成的1:1和1:2（摩尔比）氢键复合物进行了理论计算研究,分别得到稳定的4-羟甲基吡啶－H₂O和4-羟甲基吡啶－(H₂O)₂氢键复合物3个和8个。经基组重叠误差和零点振动能校正后,最稳定的1:1和1:2氢键复合物的相互作用能分别为-20.536和-44.246 kJ/mol。振动分析显示O-H···N(O)氢键的形成使复合物中O-H键对称伸缩振动频率红移(减小)。自然键轨道分析表明,4-羟甲基吡啶与水形成最稳定的1:1和1:2氢键复合物时,分子间电荷转移分别为0.02642 e 和0.03813 e 。含时密度泛函理论TD-B3LYP/ 6-311++G**计算显示,相对于4-羟甲基吡啶单体分子,氢键H-OH···N和H-OH···OH的形成分别使最大吸收光谱波长兰移8~16纳米和红移4~11纳米。     

单电子卤键复合体系H3C···Br-Y(Y=H, CN, NC, CCH, C2H3)的作用机制

对单电子溴键复合物H₃C···Br—Y(Y=H, CCH, CN, NC, C2H3)的结构与性质进行了理论研究. 在B3LYP/6-311++G**水平上计算了稳定构型并做了频率分析. BSSE矫正的相互作用能(E^BSSE)和NBO及AIM分析输入的波函数在MP2/6-311++G**水平下完成. 复合物H₃C···Br—Y中, CH₃(供电子体)自由基均提供一未成对电子与Br—Y中Br(受电子体)形成了单电子溴键, 此单电子溴键也具有“三电子”键的特征. 单电子溴键的形成导致甲基H的背向Y弯曲和Br—Y键的拉长及红移单电子溴键复合物的产生. 考察了电子受体中不同取代基, C(spⁿ)-Br杂化及溶剂的存在对复合物作用的影响, 将单电子氢键, 单电子卤键和单电子锂键的作用强度做了对比, 进一步对Popelier提出的氢键体系中的前三个重要拓扑指标在单电子溴键体系中的重现性进行了探讨.     

邻二氮杂苯-水复合物的氢键结构与性质

用密度泛函理论B3LYP方法和MP2方法对邻二氮杂苯-水复合物基态的氢键结构与相互作用能进行了理论计算,结果表明复合物之间存在较强的氢键N…H－O.在复合物中,水的H－O对称伸缩振动频率明显红移.同时,使用含时密度泛函理论方法计算了邻二氮杂苯单体及复合物的低占据1(n,π*) 和1(π,π*) 态的垂直激发能,计算结果与实验值吻合较好.     

气相中CrO2+和H2反应的理论研究

用密度泛函UB3LYP/6-311++G(3df, 3pdpd)//6-311G(2dd, p)方法计算研究了在二重态和四重态两个势能面上的气相反应：CrO₂⁺ + H₂→CrO⁺+ H₂O. 对影响反应机理和反应速率的势能面交叉进行了讨论, 并运用Hammond 假设和Yoshizawa 等的内禀反应坐标(IRC)单点垂直激发计算的方法找出了势能面交叉点(crossing point (CP)). 运用碎片分子轨道(fragment molecular orbital(FMO))理论, 对初始复合物2IM1和4IM1的轨道相关进行了分析, 解释了CrO₂⁺活化H—H σ键及H₂迁移的机理.     

乙醇-水分子团簇C2H5OH(H2O)n (n=1-9)稳定结构的量子化学研究

采用密度泛函理论B3LYP方法, 在B3LYP/6-311++G(2d,2p)//B3LYP/6-311++G(d,p)基组水平上对乙醇-水分子团簇(C₂H₅OH(H₂O)_n (n=1-9))的各种性质进行研究, 如: 优化的几何构型、结构参数、氢键、结合能、平均氢键强度、自然键轨道(NBO)电荷分布、团簇的生长规律等. 结果表明, 从二维(2-D)环状结构到三维(3-D)笼状结构的过渡出现在n=5的乙醇-水分子团簇中. 此外, 利用团簇结合能的二阶差分、形成能、能隙等性质, 发现在n=6时乙醇-水分子团簇的最低能量结构稳定性较好, 可能为幻数结构. 最后, 为了进一步探讨氢键本质, 将C₂H₅OH(H₂O)_n (n=2-9)最低能量结构的各种性质与纯水分子团簇(H₂O)_n (n=3-10)比较, 结果表明前者与后者中的水分子之间氢键相似.     

煤炭燃烧过程中N2O消除反应机理的密度泛函理论研究

用密度泛函理论B3LYP方法对煤炭燃烧过程中N₂O的消除反应进行研究。选用6-311++G**和aug-cc-pVTZ基组,优化了反应通道上反应物、过渡态和产物的几何构型。预测了它们的热力学性质(总能量、焓、熵和吉布斯自由能)及其随温度的变化。预测N₂O+CO反应的活化能为200 kJ·mol^-1,与实验值193±8 kJ·mol^-1较一致。计算了500~1 800 K 温度范围的反应速率常数。在N₂O的分解中,N₂O与H和CN自由基的反应为动力学优先进行的反应,其活化能为50~55 kJ·mol^-1。在B3LYP/aug-cc-pVTZ level水平下,N₂O+CN反应是热力学最有利的自发反应,其吉布斯自由能变化为-407 kJ·mol^-1。     

Structure and property of the hydrogen bonding complex between triazines and water

The study of the intermolecular interactions that drive the solvation of six-membered nitrogenated aromatic rings is of particular importance since they are known to constitute key building blocks of pro- teins and nucleotides[1―5]. The investigation of the 1:1 adduct of these molecules with water will be the first step in the understanding of such interactions. These molecules possess two different proton-acceptor sites: the ring π cloud and the lone pairs of electrons on the nitrogen atoms…     

1,2,3-三氮杂苯-水复合物氢键相互作用

Density functional theory B3LYP method with 6-31++G** basis was used to optimize the geometries of the ground states for 1,2,3-triazine-(H2O)n (n=1,2,3) complexes. All calculations indicate that the 1,2,3-triazine-water complexes in the ground states have strong hydrogen-bonding interaction, and the complex having a N…H-O hydrogen bond and a chain of water molecules which is terminated by a O…H-C hydrogen bond is the most stable. The H-O stretching modes of complexes are red-shifted relative to that of the monomer. In addition, the Natural bond orbit (NBO) analysis indicates that the intermolecular charge transfer between 1,2,3-triazine and water is 0.0222e, 0.0261e and 0.0273e for the most stable 1:1, 1:2 and 1:3 complexes, respectively. The first singlet (n, π*) vertical excitation energy of the monomer 1,2,3-triazine and the hydrogen-bonding complexes of 1,2,3-triazine-(H2O)n were investigated by time-dependent density functional theory.     

A luminescent bis(pyridyl)‐substituted benzimidazole platinum(II) complex exhibiting an intermolecular anagostic interaction

The photophysical properties of transition metal complexes of the 5,6‐dimethyl‐2‐(pyridin‐2‐yl)‐1‐(pyridin‐2‐ylmethyl)‐1H‐benzimidazole ligand are of interest. Dichlorido[5,6‐dimethyl‐2‐(pyridin‐2‐yl)‐1‐(pyridin‐2‐ylmethyl)‐1H‐benzimidazole‐κ²N ²,N ³]platinum(II), [PtCl₂(C₂₀H₁₈N₄)], is luminescent in the solid state at room temperature. The compound displays a distorted square‐planar coordination geometry. The Pt—N(imidazole) bond length is shorter than the Pt—N(pyridine) bond length. The extended structure reveals that symmetry‐related molecules display weak C—H…N, C—H…Cl, and C—H…Pt hydrogen‐bonding interactions that are clearly discernable in the Hirshfeld surface and fingerprint plots. The intermolecular C—H…Pt and C—H…N interactions have been explored using density functional theory. The result of an analysis of the distance dependence of C—H…Pt yields a value consistent with that observed in the solid‐state structure. The energy of interaction for the C—H…Pt interaction is found to be about −11 kJ mol⁻¹.     

Complexes of nickel(II) and copper(II) with 1,2,4‐triazole‐3‐carboxylic acid and of cobalt(III) with 3‐amino‐1,2,4‐triazole‐5‐carboxylic acid

Because of their versatile coordination modes and strong coordination ability for metals, triazole ligands can provide a wide range of possibilities for the construction of metal–organic frameworks. Three transition‐metal complexes, namely bis(μ‐1,2,4‐triazol‐4‐ide‐3‐carboxylato)‐κ³N ²,O :N ¹;κ³N ¹:N ²,O‐bis[triamminenickel(II)] tetrahydrate, [Ni₂(C₃HN₃O₂)₂(NH₃)₆]·4H₂O, (I), catena‐poly[[[diamminediaquacopper(II)]‐μ‐1,2,4‐triazol‐4‐ide‐3‐carboxylato‐κ³N ¹:N ⁴,O‐[diamminecopper(II)]‐μ‐1,2,4‐triazol‐4‐ide‐3‐carboxylato‐κ³N ⁴,O :N ¹] dihydrate], {[Cu₂(C₃HN₃O₂)₂(NH₃)₄(H₂O)₂]·2H₂O}_n , (II), (μ‐5‐amino‐1,2,4‐triazol‐1‐ide‐3‐carboxylato‐κ²N ¹:N ²)di‐μ‐hydroxido‐κ⁴O :O‐bis[triamminecobalt(III)] nitrate hydroxide trihydrate, [Co₂(C₃H₂N₄O₂)(OH)₂(NH₃)₆](NO₃)(OH)·3H₂O, (III), with different structural forms have been prepared by the reaction of transition metal salts, i.e. NiCl₂, CuCl₂ and Co(NO₃)₂, with 1,2,4‐triazole‐3‐carboxylic acid or 3‐amino‐1,2,4‐triazole‐5‐carboxylic acid hemihydrate in aqueous ammonia at room temperature. Compound (I) is a dinuclear complex. Extensive O—H…O, O—H…N and N—H…O hydrogen bonds and π–π stacking interactions between the centroids of the triazole rings contribute to the formation of the three‐dimensional supramolecular structure. Compound (II) exhibits a one‐dimensional chain structure, with O—H…O hydrogen bonds and weak O—H…N, N—H…O and C—H…O hydrogen bonds linking anions and lattice water molecules into the three‐dimensional supramolecular structure. Compared with compound (I), compound (III) is a structurally different dinuclear complex. Extensive N—H…O, N—H…N, O—H…N and O—H…O hydrogen bonding occurs in the structure, leading to the formation of the three‐dimensional supramolecular structure.     

Density functional complete study of hydrogen bonding between the water molecule and the hydroxyl radical (H2O · HO)

The hydrogen bonding complexes formed between the H₂O and OH radical have been completely investigated for the first time in this study using density functional theory (DFT). A larger basis set 6‐311++G(2d,2p) has been employed in conjunction with a hybrid density functional method, namely, UB3LYP/6‐311++G(2d,2p). The two degenerate components of the OH radical ²Π ground electronic state give rise to independent states upon interaction with the water molecule, with hydrogen bonding occurring between the oxygen atom of H₂O and the hydrogen atom of the OH radical. Another hydrogen bond occurs between one of the H atoms of H₂O and the O atom of the OH radical. The extensive calculation reveals that there is still more hydrogen bonding form found first in this investigation, in which two or three hydrogen bonds occur at the same time. The optimized geometry parameter and interaction energy for various isomers at the present level of theory was estimated. The infrared (IR) spectrum frequencies, IR intensities, and vibrational frequency shifts are reported. The estimates of the H₂O · OH complex's vibrational modes and predicted IR spectra for these structures are also made. It should be noted that a total of 10 stationary points have been confirmed to be genuine minima and transition states on the potential energy hypersurface of the H₂O · HO system. Among them, four genuine minima were located. © 2002 Wiley Periodicals, Inc. Int J Quantum Chem, 2002     

呋喃-乙酸分子间相互作用的量子化学研究

用密度泛函理论B3LYP方法选取6-311＋＋G(d,p)基组对呋喃-乙酸复合物进行了量子化学计算研究, 通过在相同水平下的频率振动分析发现了该势能面上6个极小值点, 其最稳定构型对应一强O…H—O型氢键, 其结合能在消除基组重叠误差后为－20.87 kJ•mol^－1. 通过自然键轨道(NBO)分析, 研究了电荷转移及轨道相互作用. 通过自洽反应场(SCRF)理论中的Onsager 溶剂模型在介电常数分别为1.0, 2.247, 4.9, 7.58, 10.36, 20.7, 32.63, 38.2, 46.7, 78.39的不同溶剂环境下重新优化呋喃与乙酸势能面上最稳定构型A, 研究了溶剂对呋喃-乙酸复合物几何构型、电荷分布、偶极矩以及结合能的影响. 发现溶剂化作用增大了呋喃与乙酸分子间的结合能, 导致O…H距离减小, H—O振动频率红移. 当溶液介电常数在1.0～32.63范围时, 溶剂效应十分显著, 当介电常数大于32.63后, 溶剂化作用几乎达到了极限.     

CH3SH和CH3SLi分子间的锂键和氢键共存型相互作用

在CH₃SLi＋CH₃SH势能面上求得锂键和氢键共存型复合物的两种稳定构型. 频率分析表明, 与单体相比复合物中S(5)—Li(6)键伸缩振动频率发生红移, 而C(8)—H(10)键伸缩振动频率发生蓝移. 经B3LYP/6-311＋＋G**, MP2/6-311＋＋G**及MP2/AUG-CC-PVDZ水平计算的含基组重叠误差(BSSE)校正的复合物?中相互作用能分别为－58.99, －57.87和－62.89 kJ•mol^－1. 采用自然键轨道(NBO)理论, 分析了复合物中单体轨道间的电荷转移, 电子密度重排及其与相关键键长变化的本质等. 采用分子中的原子(AIM)理论分析了复合物中氢键和锂键的电子密度拓扑性质．在极化连续模型(PCM)下, 考察了溶剂化效应. 结果表明, 所考察的水、二甲亚砜、乙醇和乙醚等四种溶剂均使单体间的相互作用能增大, 且溶剂对复合物中的锂键结构及其振动频率具有显著的影响, 而对复合物中的氢键的振动频率影响不大.     

Cocrystals of 1,4‐diethynylbenzene with 1,3‐diacetylbenzene and benzene‐1,4‐dicarbaldehyde exhibiting strong nonconventional alkyne–carbonyl C—H…O hydrogen bonds between the components

Weak interactions between organic molecules are important in solid‐state structures where the sum of the weaker interactions support the overall three‐dimensional crystal structure. The sp‐C—H…N hydrogen‐bonding interaction is strong enough to promote the deliberate cocrystallization of a series of diynes with a series of dipyridines. It is also possible that a similar series of cocrystals could be formed between molecules containing a terminal alkyne and molecules which contain carbonyl O atoms as the potential hydrogen‐bond acceptor. I now report the crystal structure of two cocrystals that support this hypothesis. The 1:1 cocrystal of 1,4‐diethynylbenzene with 1,3‐diacetylbenzene, C₁₀H₆·C₁₀H₁₀O₂, (1), and the 1:1 cocrystal of 1,4‐diethynylbenzene with benzene‐1,4‐dicarbaldehyde, C₁₀H₆·C₈H₆O₂, (2), are presented. In both cocrystals, a strong nonconventional ethynyl–carbonyl sp‐C—H…O hydrogen bond is observed between the components. In cocrystal (1), the C—H…O hydrogen‐bond angle is 171.8 (16)° and the H…O and C…O hydrogen‐bond distances are 2.200 (19) and 3.139 (2) Å, respectively. In cocrystal (2), the C—H…O hydrogen‐bond angle is 172.5 (16)° and the H…O and C…O hydrogen‐bond distances are 2.25 (2) and 3.203 (2) Å, respectively.     

Density functional theory and topological analysis on the hydrogen bonding interactions in cysteine‐thymine complexes

Hydrogen bonding interactions between amino acids and nucleic acid bases constitute the most important interactions responsible for the specificity of protein binding. In this study, complexes formed by hydrogen bonding interactions between cysteine and thymine have been studied by density functional theory. The relevant geometries, energies, and IR characteristics of hydrogen bonds (H‐bonds) have been systematically investigated. The quantum theory of atoms in molecule and natural bond orbital analysis have also been applied to understand the nature of the hydrogen bonding interactions in complexes. More than 10 kinds of H‐bonds including intra‐ and intermolecular H‐bonds have been found in complexes. Most of intermolecular H‐bonds involve O (or N) atom as H‐acceptor, whereas the H‐bonds involving C or S atom usually are weaker than other ones. Both the strength of H‐bonds and the structural deformation are responsible for the stability of complexes. Because of the serious deformation, the complex involving the strongest H‐bond is not the most stable structures. Relationships between H‐bond length (ΔR_X‐H), frequency shifts (Δv), and the electron density (ρ_b) and its Laplace (?²ρ_b) at bond critical points have also been investigated. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2011