Medicinal Chemistry in the Golden Age of Biology: Lessons from Steroid and Peptide Research

Collaboration between biologists and chemists has generated medicines of enormous benefit to society. The dynamics of this synergistic interaction combines two strengths: the rigor of chemistry and the ability of biologists to construct unifying concepts from diverse fields of investigation. The resulting contributions to the practice of medicine have reduced morbidity and mortality while increasing the quality of life. Building on the work of chemists such as Robinson, Prelog, Woodward, and Pauling, medicinal chemists have advanced rational drug discovery, especially of enzyme inhibitors, to a degree unthinkable even twenty years ago. Some of the major contributions of medicinal chemistry to human and animal health stem directly from the creative application of structural and electronic reasoning, from advances in instrumentation, and from spectacular progress in biology. However, medicinal chemists have only begun to scratch the surface of the opportunities made possible by the impact of the “double-helix revolution” of the 1950s.     

Integrating social and environmental justice into the chemistry classroom: a chemist’s toolbox

ABSTRACT

Although the chemical enterprise has provided numerous contributions to humanity, unintended consequences contribute to a disproportionate exposure of hazardous chemicals to certain populations based on race and socioeconomic status. Integrating concepts of social and environmental justice within chemistry curriculum provides an educational framework to help mitigate these impacts by training the next generation of chemists with justice-centered and green chemistry principles to guide their future work. Green and sustainable chemistry technologies can contribute to social equity and environmental justice. However, equity and social justice have only recently become a significant part of the green chemistry conversation. This article summarizes how the authors have explored issues of equity and environmental justice with the green and sustainable chemistry community. It offers a toolbox for college and university instructors containing foundational language, research, and idea-generation that can be used to strengthen the transition of a traditional chemistry curriculum toward a justice-centered one.     

Connecting the philosophy of chemistry,green chemistry,and moral philosophy

This paper aims to connect philosophy of chemistry, green chemistry, and moral philosophy. We first characterize chemistry by underlining how chemists: (1) co-define chemical bodies, operations, and transformations; (2) always refer to active and context-sensitive bodies to explain the reactions under study; and (3) develop strategies that require and intertwine with a molecular whole, its parts, and the surroundings at the same time within an explanation. We will then point out how green chemists are transforming their current activities in order to act upon the world without jeopardizing life. This part will allow us to highlight that green chemistry follows the three aforementioned characteristics while including the world as a partner, as well as biodegradability and sustainability concerns, into chemical practices. In the third part of this paper, we will show how moral philosophy can help green chemists: (1) identify the consequentialist assumptions that ground their reasoning; and (2) widen the scope of their ethical considerations by integrating the notion of care and that of vulnerability into their arguments. In the fourth part of the paper, we will emphasize how, in return, this investigation could help philosophers querying consequentialism as soon as the consequences of chemical activities over the world are taken into account. Furthermore, we will point out how the philosophy of chemistry provides philosophers with new arguments concerning the key debate about the ‘intrinsic value’ of life, ecosystems and the Earth, in environmental ethics. To conclude, we will highlight how mesology, that is to say the study of ‘milieux’, and the concept of ‘ecumeme’ proposed by the philosopher and geographer Augustin Berque, could become important both for green chemists and moral philosophers in order to investigate our relationships with the Earth.     

Professionalism and Ethics in Chemistry

This essay offers a preliminary philosophy ofchemistry as a profession focusing on professionalethics. First, I look at how well chemistry fits themodel of a liberal profession. I then explore therelationship between epistemology and ethics. Therelationship between chemistry and society isdiscussed in the context of the two-dimensionalclassification of research developed by Donald Stokesin his book Pasteur's Quadrant. Finally, Iraise the questions of an appropriate moral ideal forchemistry and the ethical conflicts that can occurwhen chemists simultaneously fulfill more than one role. This revised version was published online in August 2006 with corrections to the Cover Date.     

ortho-Quinols in (Bio)Synthesis of Natural Products

6-Alkyl-6-hydroxycyclohexa-2,4-dienone derivatives, commonly referred to as ortho-quinols, and their simple ester and ether variants constitute a class of organic compounds that aroused much interest amongst chemists over the past 70 years for several reasons related to organic synthesis, natural product chemistry and biochemistry. It was very early on that organic chemists understood the potential of the unique yet versatile chemical reactivity of such compounds to synthesize more complex structures, and it soon emerged that ortho-quinols could constitute key intermediates in the biosynthesis of certain natural products of various origins. This minireview discusses the chemistry of ortho-quinols from the point of view of their role in the synthesis and biosynthesis of natural products. Examples of completed syntheses of natural products mostly taken in the literature of the last 20 years or so, together with some chosen pieces from older but pioneering and most remarkable works, are highlighted to illustrate this discussion.     

History of Solution Chemistry of Japan

A historical view of the solution chemistry of Japan is described for a wide range of fields of solution chemistry, which relates to physical chemistry, inorganic chemistry, analytical chemistry, biochemistry and bioinorganic chemistry, and colloid and polymer chemistry. The works by pioneers of Japanese solution chemistry are introduced, some of which are not well recognized internationally. The influences of Japanese solution chemistry on the world and vice versa are discussed on the basis of a rather personal viewpoint. Recent activities of Japanese solution chemists at the national and international levels are also reviewed.     

Explanation and theory formation in quantum chemistry

In this paper I expand Eric Scerri’s notion of Popper’s naturalised approach to reduction in chemistry and investigate what its consequences might be. I will argue that Popper’s naturalised approach to reduction has a number of interesting consequences when applied to the reduction of chemistry to physics. One of them is that it prompts us to look at a ‘bootstrap’ approach to quantum chemistry, which is based on specific quantum theoretical theorems and practical considerations that turn quantum ‘theory’ into quantum ‘chemistry’ proper. This approach allows us to investigate some of the principles that drive theory formation in quantum chemistry. These ‘enabling theorems’ place certain limits on the explanatory latitude enjoyed by quantum chemists, and form a first step into establishing the relationship between chemistry and physics in more detail.     

P.‐O. Löwdin and the International Journal of Quantum Chemistry: A kaleidoscopic agenda for quantum chemistry

This is a article about P.‐O. Löwdin's life, his work in shaping quantum chemistry into a mature discipline at the intersection of mathematics, physics, chemistry, and biology, and his founding of the International Journal of Quantum Chemistry in 1967. Unavoidably, it is, also, a article reflecting our views about the history of quantum chemistry. We attempt to convey the complexities in the becoming of a subdiscipline, like quantum chemistry, where a variety of factors will have to be taken into consideration for a comprehensive understanding of its historical developments: the relations of chemists to the Heisenberg‐Schrödinger formulation of quantum mechanics after 1926, the institutional dynamics centered around the establishment of new courses and chairs, the research agendas and the vying for dominance within the community of quantum chemists, the methodological, and philosophical issues that have never left the quantum chemists indifferent, and, of course, the dramatic role of the computer in transforming the culture for actually practicing quantum chemistry. Furthermore, attracted by American history, culture, and ways of life, Löwdin suggested in the late 1970s that the post‐WWII character of quantum chemistry was dependent on its ability to hub a “scientific melting pot,” much like the United States of America which he viewed as a fusion of people from diverse provenances and cultures. In this article, we attempt to investigate another metaphor, that of the “kaleidoscope.” Löwdin believed that quantum chemistry's strength arose from its ability to nurture a multiplicity of heterogeneous cultural elements/subcultures and practices, interacting with each other, exchanging perspectives and modes of action, which circulated in an increasingly extended network of actors and institutional frameworks. © 2013 Wiley Periodicals, Inc.     

Elements of the third kind and the spin-dependent chemical force

A lively philosophical debate has lately arisen over the nature of elementhood in chemistry. Two different senses in which the technical term ELEMENT is currently in use by chemists have been identified, leaving chemistry open to the logical fallacy of equivocation. This paper introduces a third, more elemental candidate: the high-enthalpy short-lived unbonded atom. An enthalpy index based on free-atoms-as-elements is established, whereby one can monitor the degree to which an atom’s spin-based attractive force is implemented exo-enthalpically when the atom binds chemically to others. Enthalpy indexing shows that the strength of an atom’s attractive force is proportional to its spin angular momentum. Vibrational spectroscopy shows that the force varies inversely as the fourth power of the inter-atom distance. Both features differentiate the chemical force from the stronger electromagnetic force and from the weaker Van der Waals force.     

Chemistry in Times of Artificial Intelligence

Chemists have to a large extent gained their knowledge by doing experiments and thus gather data. By putting various data together and then analyzing them, chemists have fostered their understanding of chemistry. Since the 1960s, computer methods have been developed to perform this process from data to information to knowledge. Simultaneously, methods were developed for assisting chemists in solving their fundamental questions such as the prediction of chemical, physical, or biological properties, the design of organic syntheses, and the elucidation of the structure of molecules. This eventually led to a discipline of its own: chemoinformatics. Chemoinformatics has found important applications in the fields of drug discovery, analytical chemistry, organic chemistry, agrichemical research, food science, regulatory science, material science, and process control. From its inception, chemoinformatics has utilized methods from artificial intelligence, an approach that has recently gained more momentum.     

Microreaction Technology for Synthetic Chemistry

Microreaction technology as an emerging tool for synthetic chemistry has been extensively applied in academic and industrial researches. Normally, synthetic chemists used to running reactions in the classical glassware for centuries are unfamiliar and unaccustomed to use microreaction technology for routine synthetic work. This review tries to give a general introduction of the capabilities of microreaction technology. After introducing the origin and history of microreaction technology, we review and discuss mainly several synthetic examples of high T‐P reactions, hazardous reactions, flash chemistry, polymerization, photochemistry, electrochemistry and multistep API's syntheses to demonstrate the capabilities of microreactors. A summary and perspectives on microreactor technology are also given in this paper. It is anticipated that more and more chemists will understand the capabilities and limitations of microreaction technology, and could work together with chemical engineers for the synergic development of chemistry and chemical engineering.     

Photochemical reactions as key steps in five-membered N-heterocycle synthesis

The chemists have been interested in light as an energy source to induce chemical reactions since the beginning of scientific chemistry. This review summarizes the chemistry of photochemical reactions with emphasis of their synthetic applications. The organic photochemical reactions avoid the polluting or toxic reagents and therefore offer perspectives for sustainable processes and green chemistry. In summary, this review article describes the synthesis of a number of five-membered N-heterocycles.     

Biocatalytic Oxidation Reactions: A Chemist's Perspective

Oxidation chemistry using enzymes is approaching maturity and practical applicability in organic synthesis. Oxidoreductases (enzymes catalysing redox reactions) enable chemists to perform highly selective and efficient transformations ranging from simple alcohol oxidations to stereoselective halogenations of non‐activated C?H bonds. For many of these reactions, no “classical” chemical counterpart is known. Hence oxidoreductases open up shorter synthesis routes based on a more direct access to the target products. The generally very mild reaction conditions may also reduce the environmental impact of biocatalytic reactions compared to classical counterparts. In this Review, we critically summarise the most important recent developments in the field of biocatalytic oxidation chemistry and identify the most pressing bottlenecks as well as promising solutions.     

Academic librarians at play in the field of cheminformatics: building the case for chemistry research data management

There are compelling needs from a variety of camps for more chemistry data to be available. While there are funder and government mandates for depositing research data in the United States and Europe, this does not mean it will be done well or expediently. Chemists themselves do not appear overly engaged at this stage and chemistry librarians who work directly with chemists and their local information environments are interested in helping with this challenge. Our unique understanding of organizing data and information enables us to contribute to building necessary infrastructure and establishing standards and best practices across the full research data cycle. As not many support structures focused on chemistry currently exist, we are initiating explorations through a few case studies and focused pilot projects presented here, with an aim of identifying opportunities for increased collaboration among chemists, chemistry librarians, cheminformaticians and other chemistry professionals.     

Tracking chemical kinetics in high-throughput systems

Combinatorial chemistry and high‐throughput experimentation (HTE) have revolutionized the pharmaceutical industry—but can chemists truly repeat this success in the fields of catalysis and materials science? We propose to bridge the traditional “discovery” and “optimization” stages in HTE by enabling parallel kinetic analysis of an array of chemical reactions. We present here the theoretical basis to extract concentration profiles from reaction arrays and derive the optimal criteria to follow (pseudo)first‐order reactions in time in parallel systems. We use the information vector f and introduce in this context the information gain ratio, χ_r, to quantify the amount of useful information that can be obtained by measuring the extent of a specified reaction r in the array at any given time. Our method is general and independent of the analysis technique, but it is more effective if the analysis is performed on‐line. The feasibility of this new approach is demonstrated in the fast kinetic analysis of the carbon–sulfur coupling between 3‐chlorophenylhydrazonopropane dinitrile and β‐mercaptoethanol. The theory agrees well with the results obtained from 31 repeated C? S coupling experiments.     

Potential Applications of Cucurbit[n]urils and Their Derivatives in the Capture of Hazardous Chemicals

Cucurbit[n]urils (Q[n]s) are a relatively young family of macrocycles, consisting of glycoluril units bridged by methylene groups, and their unique structures have attracted extensive attention from chemists in recent decades. Due to the presence of a rigid hydrophobic inner cavity and two polar outer portals lined with carbonyl groups, Q[n]s not only encapsulate guest species into the cavity, but also coordinate with metal ions/clusters. Considerable achievements have been obtained in the fields of Q[n]s-based host–guest chemistry, coordination chemistry, as well as the combination of host–guest and coordination chemistry. Furthermore, the outer surface of Q[n]s has been demonstrated to be capable of interacting with definite species to generate supramolecular architectures in recent years. With more in-depth research into Q[n]s, their application studies have also emerged as a hot topic. This Minireview focuses on recent advances in the potential applications of solid-state materials based on Q[n]s and their derivatives for the capture and adsorption of hazardous chemicals from a solution or a gas mixture.     

Open-access liquid chromatography/mass spectrometry in a drug discovery environment

The use of open-access mass spectrometry to monitor synthetic chemistry reactions, and also the integrity and purity of new chemical entities, has been a part of the medicinal chemist's tool-box for more than 5 years. Originally in our group at Wyeth Research there were two open-access methods available to the chemists, flow injection analysis (FIA) and liquid chromatography/mass spectrometry (LC/MS). The FIA method was approximately 3 min long, while the LC/MS method was approximately 20 min long (including an 8 min gradient). Within the first 2 years, the total number of open-access analyses increased by approximately 125%. It is interesting, however, that the number of LC/MS analyses increased by more than 285%. This is attributed to the fact that the chemists began using the LC/MS data to monitor reactions and also to check final product integrity and purity. In addition, the number of chemists performing parallel synthesis reactions has increased; thus, individual chemists can produce sample sets of up to 100 vials. This paper describes the implementation of new methodology, which accommodates the need for much faster run times and also the ability to acquire alternating positive and negative ion spectra within the same run. In addition, the instrument has been configured to e-mail the resulting processed data report to the submitting chemist. Several methods have been developed, including structure elucidation using in-source collision-induced dissociation (CID) and night-time analysis. The LC/MS methods for this system are described herein and are applicable to both industrial and academic synthetic chemistry optimization efforts.     

Polymeric Antitumor Agents on a Molecular and on a Cellular Level?

“Chemistry has become a mature science, with all the advantages and handicaps of maturity: harvest is abundant, but many people think future and adventure are to be found elsewhere”^[1a]. This holds true—in 1981, the year of Hermann Staudinger's 100th birthday—for macromolecular chemistry, too. Where can the polymer chemists seek adventures? Unsolved problems in neighboring fields like medicine and molecular biology attract his zeal. Cancer chemotherapy is such a field. Can the polymer chemist help to solve its problems? Polymers may be pharmacologically active as such. If used as carriers, they may, due to their intrinsic properties, influence body distribution, excretion or cell uptake of the pharmaca they carry. Hence, there is a chance for new ways in therapy, including affinity chemotherapy using synthetic macromolecules. Our own body has a perfect biological system for affinity therapy: immune response to infection selectively attacks foreign cells, It is fascinating to observe what the immune system does to a tumor cell which could not escape immune surveillance (cf. Fig. 14). Can these specific cell-cell interactions be mimicked? What do we have to learn for an experimental approach to this adventure? Stable membrane and cell models can be synthesized, a first step towards this goal. Macromolecular chemistry is far from being able to offer satisfying solutions for a specific tumor therapy; striving for it, polymer chemists can learn lots of things. In order to do so, they will have to enter neighboring fields and they will have to be willing and able to cooperate.     

Environmental performance metrics for daily use in synthetic chemistry

A simple quantitative approach to enable chemists to compare alternative chemical syntheses on the lab bench with respect to their resource usage and their potential environmental impact is proposed; this may be useful for the systematic design of more sustainable processes. We consider as metrics the mass index S(-1) and the environmental factor E to characterize quantitatively the reaction input and output, respectively. The potential environmental impact is estimated by using easily available data of each compound of the feed and of each compound of the waste. The calculations can easily be performed using EATOS-environmental assessment tool for organic syntheses.