Host-guest complexes of cucubit[8]uril with phenanthrolines and some methyl derivatives

Cucurbituril a molecular container (or host) has a rigid hollow interior cavity which is large enough to accommodate, one or more, smaller molecules (or guests). The cavity is accessible through two carbonyl portal openings. Molecules or guests enter the …     

七、八元瓜环与二溴化1,n-亚烷基-二-2-甲基吡啶的超分子自组装

合成和表征了4个碳链长度不同二溴化1,n-亚烷基-二-2-甲基吡啶(客体,n=6,8,10,12),利用1H NMR技术、热重分析及紫外吸收光谱法考察了这些客体与七、八元瓜环(主体)的相互作用,以及形成的主客体包结物的结构特征.研究结果表明4个客体与七、八元瓜环形成不同的主客体包合物.七元瓜环可穿梭在线性客体分子上形成类轮烷型或哑铃型主客体包合物;而由于具有较大的空腔,八元瓜环可包容弯曲状的整个客体分子.     

Benzobis(imidazolium)-cucurbit[8]uril complexes for binding and sensing aromatic compounds in aqueous solution

The utilities of benzobis(imidazolium) salts (BBIs) as stable and fluorescent components of supramolecular assemblies involving the macrocyclic host, cucurbit[8]uril (CB[8]), are described. CB[8] has the unusual ability to bind tightly and selectively to two different guests in aqueous media, typically methyl viologen (MV) as the first guest, followed by an indole, naphthalene, or catechol-containing second guest. Based on similar size, shape, and charge, tetramethyl benzobis(imidazolium) (MBBI) was identified as a potential alternative to MV that would increase the repertoire of guests for cucurbit[8]uril. Isothermal titration calorimetry (ITC) studies showed that MBBI binds to CB[8] in a 1:1 ratio with an equilibrium association constant (K(a)) value of 5.7×10(5) M(-1), and that the resulting MBBI·CB[8] complex binds to a series of aromatic second guests with K(a) values ranging from 10(3) to 10(5) M(-1). These complexation phenomena were supported by mass spectrometry, which confirmed complex formation, and a series of NMR studies that showed the expected upfield perturbation of aromatic peaks and of the MBBI methyl peaks. Surprisingly, the binding behavior of MBBI is strikingly similar to that of MV, and yet MBBI offers a number of substantial advantages for many applications, including intrinsic fluorescence, high chemical stability, and broad synthetic tunability. Indeed, the intense fluorescence emission of the MBBI·CB[8] complex was quenched upon binding to the second guests, thus demonstrating the utility of MBBI as a component for optical sensing. Building on these favorable properties, the MBBI·CB[8] system was successfully applied to the sequence-selective recognition of peptides as well as the controlled disassembly of polymer aggregates in water. These results broaden the available guests for the cucurbit[n]uril family and demonstrate potentially new applications.     

Mechanism of host-guest complexation by cucurbituril

The factors affecting host-guest complexation between the molecular container compound cucurbit[6]uril (CB6) and various guests in aqueous solution are studied, and a detailed complexation mechanism in the presence of cations is derived. The formation of the supramolecular complex is studied in detail for cyclohexylmethylammonium ion as guest. The kinetics and thermodynamics of complexation is monitored by NMR as a function of temperature, salt concentration, and cation size. The binding constants and the ingression rate constants decrease with increasing salt concentration and cation-binding constant, in agreement with a competitive binding of the ammonium site of the guest and the metal cation with the ureido carbonyl portals of CB6. Studies as a function of guest size indicate that the effective container volume of the CB6 cavity is approximately 105 A(3). It is suggested that larger guests are excluded for two reasons: a high activation barrier for ingression imposed by the tight CB6 portals and a destabilization of the complex due to steric repulsion inside. For example, in the case of the nearly spherical azoalkane homologues 2,3-diazabicyclo[2.2.1]hept-2-ene (DBH, volume ca. 96 A(3)) and 2,3-diazabicyclo[2.2.2]oct-2-ene (DBO, volume ca. 110 A(3)), the former forms the CB6 complex promptly with a sizable binding constant (1300 M(-1)), while the latter does not form a complex even after several months at optimized complexation conditions. Molecular mechanics calculations are performed for several CB6/guest complexes. A qualitative agreement is found between experimental and calculated activation energies for ingression as a function of both guest size and state of protonation. The potential role of constrictive binding by CB6 is discussed.     

Molecular-recognition properties of a water-soluble cucurbit[6]uril analogue

The molecular-recognition properties of the cucurbit[6]uril analogue (1) in aqueous buffer (sodium acetate, 50 mM, pH 4.74, 25 degrees C) toward a variety of guests including alkanediamines (6-12), aromatics (14-32), amino acids (33-36), and nucleobases (37-42) were studied by fluorescence spectroscopy. For the alkanediamines studied (H2N(CH)nNH2, n = 6, 7, 8, 9, 10, 11, 12), the association constants increase as the length of the alkane (n) is increased. Host 1 is capable of forming strong complexes with guests containing aromatic rings with association constants (Ka) ranging from 10(2) to 10(6) M(-1) as a result of the favorable pi-pi interactions that occur between host 1 and the aromatic rings of the guest when bound in the cavity of 1. Biologically relevant guests such as amino acids and nucleobases are also bound in the cavity of 1 with Ka values ranging from 10(3) to 10(6) M(-1). Consequently, cucurbit[6]uril analogue 1 functions as a versatile fluorescent sensor for the presence of a wide range of chemically and biologically important substances in aqueous solution including nitroaromatics, neurotransmitters, amino acids, and nucleobases.     

Force-field and quantum-mechanical binding study of selected SAMPL3 host-guest complexes

A Merck molecular force field classical potential combined with Poisson-Boltzmann electrostatics (MMFF/PB) has been used to estimate the binding free energy of seven guest molecules (six tertiary amines and one primary amine) into a synthetic receptor (acyclic cucurbit[4]uril congener) and two benzimidazoles into cyclic cucurbit[7]uril (CB[7]) and cucurbit[8]uril (CB[8]) hosts. In addition, binding enthalpies for the benzimidazoles were calculated with density functional theory (DFT) using the B3LYP functional and a polarizable continuum model (PCM). Although in most cases the MMFF/PB approach returned reasonable agreements with the experiment (±2 kcal/mol), significant, much larger deviations were reported in the case of three host-guest pairs. All four binding enthalpy predictions with the DFT/PCM method suffered 70% or larger deviations from the calorimetry data. Results are discussed in terms of the molecular models used for guest-host complexation and the quality of the intermolecular potentials.     

Binding selectivity of cucurbit[7]uril: bis(pyridinium)-1,4-xylylene versus 4,4'-bipyridinium guest sites

The binding interactions between the host cucurbit[7]uril (CB7) and a series of linear guests containing bis(pyridinium)-1,4-xylylene and/or 4,4'-bipyridinium residues were investigated by (1)H NMR spectroscopy. CB7 was found to exhibit considerable binding selectivity for bis(pyridinium)-1,4-xylylene over 4,4'-bipyridinium sites. New pseudo-rotaxane and rotaxane compounds were synthesized utilizing the host-guest interactions between CB7 and the surveyed guests. [structure: see text]     

Encapsulation of 2,2′-(decane-1,10-diyl)-diisoquinoline into cucurbit[6]uril and α,α′,δ,δ′-tetramethyl-cucurbit[6]uril: formation of pseudorotaxanes and polypseudorotaxanes†

Host–guest complexation of cucurbit[6]uril and α,α′,δ,δ′-tetramethyl-cucurbit[6]uril with 2,2′-(decane-1,10-diyl)-diisoquinolinium has been investigated by ¹H NMR, UV and fluorescence spectroscopy in aqueous solution and by X-ray crystallography in solid state. Experimental data suggest that in the aqueous solution, both host molecules form [2]pseudorotaxanes with the host located over the decyl chain of the guest. In the solid state, neighbouring [2]pseudorotaxanes are linked by π?π and C–H?π interactions, eventually generating polypseudorotaxanes.     

Cucurbit[7]uril host-guest complexes with small polar organic guests in aqueous solution

The host-guest stability constants for the inclusion of a series of small neutral polar organic guests in cucurbit[7]uril (CB[7]) have been determined in aqueous solution by (1)H NMR titrations. The dependence of the stability constant on the nature of the guests indicates that hydrophobic and dipole-quadrupole interactions are responsible for the binding. The complexation-induced chemical shift changes in the guest proton resonances, coupled with energy-minimization calculations, suggest that the guests are located such that their dipole moment is aligned perpendicular with the quadrupole moment of the CB[7] host. The stability constants for acetone and acetophenone decrease in the presence of Na(+) or K(+) cations as a result of cation capping of the CB[7] portals.     

pH-Switched fluorescent pseudorotaxane assembly of cucurbit[7]uril with bispyridinium ethylene derivatives

¹H NMR spectra and fluorescence analysis revealed that the molecular shuttle and pseudorotaxane assembly of Q[7] with guest G²⁺ can be significantly switched via protonation and deprotonation of the terminal carboxylates of the guest.     

Cucurbit[7]uril Inclusion Complexes with Benzimidazole Derivatives: A Computational Study

Molecular dynamics (MD) simulations were carried out to study the host–guest complexation in aqueous solution between cucurbit[7]uril (CB7) and the neutral and protonated forms of benzimidazole derivatives. Complexation occurs via encapsulation of the hydrophobic part (benzene ring) of the guest within the CB7 hydrophobic cavity, and the interactions of the amine group(s) of the imidazole ring of the guest with the CB7 carbonyl portals. The molecular mechanics Poisson–Boltzmann surface area (MM-PBSA) method is used to estimate the host–guest Gibbs energy of binding. The results indicate that CB7 binds the protonated form more strongly than the neutral one, and that the dominant contribution to the Gibbs energy of complexation for the neutral and protonated guests is associated, respectively, with the host–guest van der Waals and electrostatic interactions. Quantum chemical calculations using dispersion-corrected density functional theory (DFT) are used to calculate the binding affinities and to predict the pK_a values of the free and complexed guests. The calculated pK_a values for the free guests reveal excellent agreement with the experimental values, while for the complexed guests, general trends are obtained.     

Complexation of ferrocene derivatives by the cucurbit[7]uril host: a comparative study of the cucurbituril and cyclodextrin host families

The formation of inclusion complexes between cucurbit[7]uril (CB[7]) and ferrocene and its derivatives has been investigated. The X-ray crystal structure of the 1:1 inclusion complex between ferrocene and CB[7] revealed that the guest molecule resides in the host cavity with two different orientations. Inclusion of a set of five water-soluble ferrocene derivatives in CB[7] was investigated by 1H NMR spectroscopy and calorimetric and voltammetric techniques. Our data indicate that all neutral and cationic guests form highly stable inclusion complexes with CB[7], with binding constants in the 10(9)-10(10) M(-)(1) and 10(12)-10(13) M(-1) ranges, respectively. However, the anionic ferrocenecarboxylate, the only negatively charged guest among those surveyed, was not bound by CB[7] at all. These results are in sharp contrast to the known binding behavior of the same guests to beta-cyclodextrin (beta-CD), since all the guests form stable inclusion complexes with beta-CD, with binding constants in the range 10(3)-10(4) M(-1). The electrostatic surface potentials of CB[6], CB[7], and CB[8] and their size-equivalent CDs were calculated and compared. The CD portals and cavities exhibit low surface potential values, whereas the regions around the carbonyl oxygens in CBs are significantly negative, which explains the strong affinity of CBs for positively charged guests and also provides a rationalization for the rejection of anionic guests. Taken together, our data suggest that cucurbiturils may form very stable complexes. However, the host-guest interactions are very sensitive to some structural features, such as a negatively charged carboxylate group attached to the ferrocene residue, which may completely disrupt the stability of the complexes.     

The importance of methylation in the binding of (ferrocenylmethyl)tempammonium guests by cucurbit[n]uril (n=7, 8) hosts

The extent of methylation of the central nitrogen in (ferrocenylmethyl)tempammonium guests determines the main binding site for complexation by the cucurbit[8]uril host.     

六～八元瓜环与三种N-苄基取代笼状客体的相互作用

合成了3种具有对不同瓜环选择性各异的双探针N-苄基取代笼状客体, 它们分别是N-苄基六次甲基四胺盐酸盐(1), N-苄基喹啉环啶盐酸盐(2), N-苄基-1,4-二氮杂双环[2.2.1]辛烷盐酸盐(3), 利用¹H NMR和MS等方法对这些客体进行了表征. ¹H NMR显示, 六元瓜环仅对这些客体的苄基探针部分具有选择性作用, 形成作用比为1∶1的不对称包结配合物; 七元瓜环对客体1和3的苄基探针部分具有选择性作用, 形成作用比为1∶1的不对称包结配合物, 而对客体2的笼状奎宁环啶基部分具有选择性作用, 也形成作用比为1∶1的包结配合物; 八元瓜环也仅对这些客体的苄基探针部分具有选择性作用, 形成作用比为1∶2的对称包结配合物.     

The cucurbit[n]uril family: prime components for self-sorting systems

We determined the values of Ka for a wide range of host-guest complexes of cucurbit[n]uril (CB[n]), where n = 6-8, using 1H NMR competition experiments referenced to absolute binding constants measured by UV/vis titration. We find that the larger homologues--CB[7] and CB[8]--individually maintain the size, shape, and functional group selectivity that typifies the recognition behavior of CB[6]. The cavity of CB[7] is found to effectively host trimethylsilyl groups. Remarkably, the values of Ka for the interaction of CB[7] with adamantane derivatives 22-24 exceeds 10(12) M(-1)! The high levels of selectivity observed for each CB[n] individually is also observed for the CB[n] family collectively. That is, the selectivities of CB[6], CB[7], and CB[8] toward a common guest can be remarkably large. For example, guests 1, 3, and 11 prefer CB[8] relative to CB[7] by factors greater than 10(7), 10(6), and 3000, respectively. Conversely, guests 23 and 24 prefer CB[7] relative to CB[8] by factors greater than 5100 and 990, respectively. The high levels of selectivity observed individually and collectively for the CB[n] family renders them prime components for the preparation of functional biomimetic self-sorting systems.     

Cucurbit[7]uril host-guest complexes of the histamine H2-receptor antagonist ranitidine

The macrocyclic host cucurbit[7]uril forms very stable complexes with the diprotonated (K(CB[7])(1) = 1.8 x 10(8) dm(3) mol(-1)), monoprotonated (K(CB[7])(2) = 1.0 x 10(7) dm(3) mol(-1)), and neutral (K(CB[7])(3) = 1.2 x 10(3) dm(3) mol(-1)) forms of the histamine H(2)-receptor antagonist ranitidine in aqueous solution. The complexation behaviour was investigated using (1)H NMR and UV-visible spectroscopy as a function of pH and the pK(a) values of the guest were observed to increase (DeltapK(a1) = 1.5 and DeltapK(a2) = 1.6) upon host-guest complex formation. The energy-minimized structures of the host-guest complexes with the cationic guests were determined and provide agreement with the NMR results indicating the location of the CB[7] over the central portion of the guest. The inclusion of the monoprotonated form of ranitidine slows the normally rapid (E)-(Z) exchange process and generates a preference for the (Z) isomer. The formation of the CB[7] host-guest complex greatly increases the thermal stability of ranitidine in acidic aqueous solution at 50 degrees C, but has no effect on its photochemical reactivity.     

Interaction between cucurbit[6]uril and bispyridinecarboxamide

The interaction between cucurbit[6]uril and N,N′-(m-bispyridinecarboxamide)-1,n-alkane (m = 2, 3, 4; n = 4, 6, 8) has been investigated by ¹H-NMR, ESI-MS and single crystal X-ray diffraction method. The results show that cucurbit[6]uril can form pseudorotaxanes with N,N′-(m-bispyridinecarboxamide)-1,6-hexane (m = 2, 3, 4) easily. When the alkyl chain length increases (n = 8), the binding mode is identical, but the binding ability of the host towards guest decreases. In both two cases cucurbit[6]uril shows no selectivity towards positional isomers. However, in the case of n = 4, the binding mode is different, having relations with positional substitution of the guest. Only N,N′-(m-bispyridinecarboxamide)-1,4-butane (m = 2) can form pseudorotaxane with cucurbit[6]uril, while the other two (m = 3, m = 4) form external complex with cucurbit[6]uril. The possible reason for the difference has been discussed.     

Efficient Room‐Temperature Phosphorescence of a Solid‐State Supramolecule Enhanced by Cucurbit[6]uril

Efficient emission of purely organic room‐temperature phosphorescence (RTP) is of great significant for potential application in optoelectronics and photobiology. Herein, we report an uncommon phosphorescent effect of organic single molecule enhanced by resulting supramolecular assembly of host–guest complexation. The chromophore bromophenyl‐methyl‐pyridinium (PY) with different counterions as guests display various phosphorescence quantum yields from 0.4 % to 24.1 %. Single crystal X‐ray diffraction results indicate that the chromophore with iodide counterion (PYI) exhibits the highest efficiency maybe due to the halogen‐bond interactions. Significantly, the nanosupramolecular assembly of PY chloride complexation with the cucurbit[6]uril gives a greatly enhanced phosphorescent quantum yield up to 81.2 % in ambient. Such great enhancement is because of the strict encapsulation of cucurbit[6]uril, which prevents the nonradiative relaxation and promotes intersystem crossing (ISC). This supramolecular assembly concept with counterions effect provides a novel approach for the improvement of RTP.     

Inclusion of Carboxyl Function Inside of Cucurbiturils and its Use in Molecular Switches

We have prepared organic guest molecules in which two pyridinium rings are connected through an aromatic/aliphatic bridge bearing a carboxyl group. The supramolecular interactions between these guests and macrocyclic hosts cucurbit[7]uril ( CB7 ) and cucurbit[8]uril ( CB8 ) has been studied. We have demonstrated that the binding modes of the complexes depend on the type of central bridge present in the guest molecules and the size of the macrocycle. We have also showed that the binding mode between cucurbiturils and guests with aromatic bridges is pH independent. On the other hand, a guest containing an aliphatic bridge and CB7 formed a pseudorotaxane, which behaved as a pH‐driven molecular switch.     

反式七元瓜环与N,N'-二苄基-4,4'-联吡啶氯化物的络合行为研究

利用核磁共振技术、 紫外-可见吸收光谱、 荧光发射光谱、 等温量热滴定及基质辅助激光解吸电离飞行时间质谱(MALDI-TOF MS)等方法研究了N,N'-二苄基-4,4'-联吡啶氯化物(G1, 客体分子)与反式七元瓜环(iQ[7], 主体分子)的相互作用及形成的主客体包结配合物的结构特征. 结果表明, 客体分子两端的苄基部分分别进入iQ[7]的空腔, 而4,4'-联吡啶则一部分被iQ[7]的空腔所包结, 另一部分处于iQ[7]的端口, 形成包结比为2:1的哑铃型主客体超分子组装体.