Detection of non-typical porphyrin isomers in human urines by ion-pair reversed-phase high-performance liquid chromatography

An improved ion-pair reversed-phase high-performance liquid chromatographic system has been developed for the separation of uroporphyrin isomers I, II and III, whereas the isomers III and IV could not be resolved. Application of this method to the analysis of urines from porphyric patients indicated the presence of small amounts of the non-typical uroporphyrin isomer II. The questionable presence of the isomer IV was confirmed by acid-catalyzed decarboxylation to the corresponding coproporphyrin isomers, which were completely separated by a modified ion-pair method at elevated column temperatures. These procedures enabled the detection of small fractions of the atypical isomers II (1-3%) and IV (8-15%) besides the normal isomers I and III in urines of patients suffering from attacks of acute intermittent porphyria. Because such urines contain large amounts of porphobilinogen, the nonenzymatic self-condensation of porphobilinogen to uroporphyrinogens was studied under mild reaction conditions. In these experiments quite similar isomeric compositions were observed as compared to those in urines of patients with acute intermittent porphyria. Thus the non-typical uroporphyrin isomers II and IV present in human urines originate from a simple non-enzymatic condensation of porphobilinogen.     

The unusual thermochromic NIR luminescence of Cu(I) clusters: tuned by Cu-Cu interactions and packing modes

Two hexanuclear Cu(I) clusters [Cu(I)(3)(4-ptt)(3)](2)·3DMF·3H(2)O (1) and [Cu(I)(4-ptt)](6)·8DMF·7H(2)O (2) (4-Hptt = 5-(pyridin-4-yl)-1H-1,2,4-triazole-3-thiol, DMF = N,N-dimethylformamide), were synthesized and characterized. Compounds 1 and 2 with similar coordination environments are isomers, but their detailed structures are different due to the reaction temperature tuning effect. Both 1 and 2 extend from monomers to 3D supramolecules with the help of hydrogen bonding between the triazole and pyridine from the 4-ptt ligands. The Cu(6)S(6) units of 1 pack in a polydirectional array, while the Cu(6)S(6) units in 2 extend in one direction and link the planes of adjacent ligands to enhance the delocalization of π electrons. Their varied Cu-Cu interactions and individual packing modes cause differences in luminescent and thermostable behaviors. Compound 1 exhibits an unusually long wavelength at about 900 nm and a higher thermal stability; while the emission of 2 splits into two bands (high-energy and low-energy emission bands) as the temperature decreases. Therefore, the emissions of 1 originate from a (3)CC transition, and those of 2 are from a mixture of (3)CC and MLCT.     

The screening of Chinese crude drugs for Ca2+ antagonist activity: identification of active principles from the aerial part of Pogostemon cablin and the fruits of Prunus mume

Hot aqueous extracts of 134 Chinese crude drugs were subjected to screening for inhibitory activity on K+ contracture of guinea pig taenia coli, and significant activity was observed in 17 crude drugs. Chemical investigations of two crude drugs, Kakko and Ubai, which originate from Pogostemon cablin and Prunus mume, respectively, were undertaken, and patchouli alcohol (I) and 5-(hydroxymethyl)-2-furaldehyde (II) were identified as their active principles, respectively.     

Accurate potential energy curve for B2. Ab initio elucidation of the experimentally elusive ground state rotation-vibration spectrum

The electron-deficient diatomic boron molecule has long puzzled scientists. As yet, the complete set of bound vibrational energy levels is far from being known, experimentally as well as theoretically. In the present ab initio study, all rotational-vibrational levels of the X (3)Σ(g)(-) ground state are determined up to the dissociation limit with near-spectroscopic accuracy (<10 cm(-1)). Two complete sets of bound vibrational levels for the (11)B(2) and (11)B-(10)B isotopomers, containing 38 and 37 levels, respectively, are reported. The results are based on a highly accurate potential energy curve, which also includes relativistic effects. The calculated set of all vibrational levels of the (11)B(2) isotopomer is compared with the few results derived from experiment [Bredohl, H.; Dubois, I.; and Nzohabonayo, P. J. Mol. Spectrosc. 1982, 93, 281; Bredohl, H.; Dubois, I.; and Melen, F. J. Mol. Spectrosc. 1987, 121, 128]. Theory agrees with experiment within 4.5 cm(-1) on average for the four vibrational level spacings that are so far known empirically. In addition, the present theoretical analysis suggests, however, that the transitions from higher electronic states to the ground state vibrational levels v = 12-15 deserve to be reanalyzed. Whereas previous experimental investigators considered them to originate from the v' = 0 vibrational level of the upper state (2)(3)Σ(u)(-), the present results make it likely that these transitions originate from a different upper state, namely the v' = 16 or the v' = 17 vibrational level of the (1)(3)Σ(u)(-) state. The ground state dissociation energy D(0) is predicted to be 23164 cm(-1).     

Photochromic metal complexes of N-methyl-4,4'-bipyridinium: mechanism and influence of halogen atoms

Photochromism of N-methyl-4,4'-bipyridinium (MQ(+)) salts and their metal complexes has never been reported. A series of MQ(+) coordinated halozinc complexes [(MQ)ZnX(3)] (X = Cl (1), Br (2), I (3)) and [(MQ)ZnCl(1.53)I(1.47)](2)(MQ)ZnCl(1.68)I(1.32) (4), with better physicochemical stability than halide salts of the MQ(+) cation, have been found to exhibit different photochromic behaviors. Compounds 1-3 are isostructural, but only 1 and 2 show photochromism. Introduction of partial Cl atoms to nonphotochromic compound 3 yields compound 4, which also displays photochromism. The photochromic response of 1, 2, and 4 indicates the presence of their long-lived charge separation states, which originate from X → MQ(+) electron transfer according to ESR and XPS measurements. Studies on the influence of different coordinated halogen atoms demonstrate that the Cl atom may be a more suitable electron donor than Br and I atoms to design redox photochromic metal complexes.     

Productions of I, I*, and C2H5 in the A-band photodissociation of ethyl iodide in the wavelength range from 245 to 283 nm by using ion-imaging detection

Photodissociation dynamics of ethyl iodide in the A band has been investigated at several wavelengths between 245 and 283 nm using resonance-enhanced multiphoton ionization technique combined with velocity map ion-imaging detection. The ion images of I, I(*), and C(2)H(5) fragments are analyzed to yield corresponding speed and angular distributions. Two photodissociation channels are found: I(5p (2)P(3/2))+C(2)H(5) (hotter internal states) and I(*)(5p (2)P(1/2))+C(2)H(5) (colder). In addition, a competitive ionization dissociation channel, C(2)H(5)I(+)+h nu-->C(2)H(5)+I(+), appears at the wavelengths <266 nm. The I/I(*) branching of the dissociation channels may be obtained directly from the C(2)H(5) (+) images, yielding the quantum yield of I(*) about 0.63-0.76, comparable to the case of CH(3)I. Anisotropy parameters (beta) determined for the I(*) channel remain at 1.9+/-0.1 over the wavelength range studied, indicating that the I(*) production should originate from the (3)Q(0) state. In contrast, the beta(I) values become smaller above 266 nm, comprising two components, direct excitation of (3)Q(1) and nonadiabatic transition between the (3)Q(0) and (1)Q(1) states. The curve crossing probabilities are determined to be 0.24-0.36, increasing with the wavelength. A heavier branched ethyl group does not significantly enhance the I(5p (2)P(3/2)) production from the nonadiabatic contribution, as compared to the case of CH(3)I.     

Tale of a twist: magnetic and optical switching in copper(II) semiquinone complexes

An intermediate (C) that is observed in both phenol hydroxylation and catechol oxidation with the side-on peroxide species [Cu(2)O(2)(DBED)(2)](2+) (DBED = N(1),N(2)-di-tert-butylethane-1,2-diamine) is identified as a copper(II) semiquinone species ([1](+)) through independent synthesis and characterization. The reaction of the redox-active 3,5-di-tert-butylquinone ligand with [(DBED)Cu(I)(MeCN)](+) yields a copper(II) semiquinone [1](+) complex with a singlet ground state and an intense purple chromophore (ε(580) ~ 3500 M(-1) cm(-1)). All other copper(II) semiquinone complexes characterized to date are paramagnetic and weakly colored (ε(800) ~ 500 M(-1) cm(-1)). Antiferromagnetic coupling between the Cu(II) center and the semiquinone radical in [1](+) is characterized by paramagnetic (1)H NMR and SQUID magnetometry. Comparative X-ray crystal structures along with density functional theory calculations correlate the geometric structures of copper(II) semiquinone complexes with their magnetic and optical properties. The unique observable properties of [1](+) originate from an increase in the overlap of the Cu 3d and semiquinone π orbitals resulting from a large rhombic distortion in the structure with a twist of 51°, attributable to the large isotropic demands of the tert-butyl substituents of the DBED ligand. Independent characterization of [1](+) allows the spectroscopic yields of intermediate C to be quantified in this intriguing hydroxylation reaction.     

Evidence of conformational equilibrium of 1-ethyl-3-methylimidazolium in its ionic liquid salts: Raman spectroscopic study and quantum chemical calculations

Raman spectra of liquid 1-ethyl-3-methylimidazolium (EMI+) salts, EMI(+)BF4-, EMI(+)PF6-, EMI(+)CF3SO3-, and EMI(+)N(CF3SO2)2-, were measured over the frequency range 200-1600 cm(-1). In the range 200-500 cm(-1), we found five bands originating from the EMI+ ion at 241, 297, 387, 430, and 448 cm(-1). However, the 448 cm(-1) band could hardly be reproduced by theoretical calculations in terms of a given EMI+ conformer, implying that the band originates from another conformer. This is expected because the EMI+ involves an ethyl group bound to the N atom of the imidazolium ring, and the ethyl group can rotate along the C-N bond to yield conformers. The torsion energy for the rotation was then theoretically calculated. Two local minima with an energy difference of ca. 2 kJ mol(-1) were found, suggesting that two conformers are present in equilibrium. Full geometry optimizations followed by normal frequency analyses indicate that the two conformers are those with planar and nonplanar ethyl groups against the imidazolium ring plane, and the nonplanar conformer is favorable. It elucidates that bands at 241, 297, 387, and 430 cm(-1) mainly originate from the nonplanar conformer, whereas the 448 cm(-1) band does originate from the planar conformer. Indeed, the enthalpy for conformational change from nonplanar to planar EMI+ experimentally obtained by analyzing band intensities of the conformers at varying temperatures is practically the same as that evaluated by theoretical calculations. We thus conclude that the EMI+ ion exists as either a nonplanar or planar conformer in equilibrium in its liquid salts.     

Electronic excitations and lattice dynamics of coordinatively "unsaturated" complex transition metal compounds

Single crystal polarized Raman and infrared spectra of the series Na(5)[MO(2)][X] with M = Co(I), Ni(I), and Cu(I) and X = S(2-) and CO(3)(2-), are reported. All phonon modes are assigned to the lattice eigenmodes based on the group theory analysis and first principles lattice dynamics calculations. The energies of the fundamental symmetric and asymmetric vibrations of the [MO(2)](3-) complex are discussed on the basis of their electronic structure and variation in M-O interatomic distances. Electronic Raman scattering and luminescence are observed for the magnetic members of the series (Co(I), d(8), and Ni(I), d(9)). Ligand field theory is employed to account for the electronic effects which originate from states split by spin-orbit coupling.     

Out of fuzzy chemistry: from prebiotic chemistry to metabolic networks

The origin of life on Earth was a chemical affair. So how did primitive biochemical systems originate from geochemical and cosmochemical processes on the young planet? Contemporary research into the origins of life subscribes to the Darwinian principle of material causes operating in an evolutionary context, as advocated by A. I. Oparin and J. B. S. Haldane in the 1920s. In its simplest form (e.g., a bacterial cell) extant biological complexity relies on the functional integration of metabolic networks and replicative genomes inside a lipid boundary. Different research programmes have explored the prebiotic plausibility of each of these autocatalytic subsystems and combinations thereof: self-maintained networks of small molecules, template chemistry, and self-reproductive vesicles. This tutorial review focuses on the debates surrounding the origin of metabolism and offers a brief overview of current studies on the evolution of metabolic networks. I suggest that a leitmotif in the origin and evolution of metabolism is the role played by catalysers' substrate ambiguity and multifunctionality.     

Diketopyrrolopyrrole-containing quinoidal small molecules for high-performance, air-stable, and solution-processable n-channel organic field-effect transistors

We report the synthesis, characterization, and application of a novel series of diketopyrrolopyrrole (DPP)-containing quinoidal small molecules as highly efficient n-type organic semiconductors in thin film transistors (TFTs). The first two representatives of these species exhibit maximum electron mobility up to 0.55 cm(2) V(-1) s(-1) with current on/current off (I(on)/I(off)) values of 10(6) for 1 by vapor evaporation, and 0.35 cm(2) V(-1) s(-1) with I(on)/I(off) values of 10(5)-10(6) for 2 by solution process in air, which is the first demonstration of DPP-based small molecules offering only electron transport characteristics in TFT devices. The results indicate that incorporation of a DPP moiety to construct quinoidal architecture is an effective approach to enhance the charge-transport capability.     

Chiroptical properties of an optically pure dicopper(I) trefoil knot and its enantioselectivity in luminescence quenching reactions

Chiroptical spectroscopy is used to investigate the properties of an optically pure dinuclear copper(I) trefoil knot. For the metal-to-ligand charge tranfer (MLCT) transition in the visible region (520 nm), the electric and magnetic transition dipole moments are determined from absorption and circular dichroism spectra: 2.8 Debye and 0.5 Bohr magneton (muB). Circular polarization in the luminescence (CPL) of the knot is determined and this allows the electric and magnetic transition dipole moments in emission to be calculated: 0.02 Debye and 0.003 muB. The large difference between the moments in absorption and emission shows that the emission observed does not originate directly from the 1MLCT state. Given the low probability for radiative decay we assign the long-lived emitting excited state to a 3MLCT state. The copper(I) trefoil knot is found to quench the emission from TbIII and EuIII(dpa)3(3)-(dpa = pyridine-2,6-dicarboxylate) with a bimolecular rate constant of 3.2 and 3.3 x 10(7)M(-1)S(-1), respectively, at room temperature in water-acetonitrile (1:1 by volume). Experimental results indicate that the (lambda)-knot preferentially quenches the lambda enantiomer of the lanthanide complex with an enantioselectivity (ratio of quenching rate constants for lambda and lambda: kqlambda/kqdelta) of 1.012+/-0.002 for EuIII and 1.0180+/-0.003 for TbIII.     

Preparation and characterization of electrospun PLGA/gelatin nanofibers as a potential drug delivery system

The time-dependent adsorption behavior of β-Lactoglobulin (β-Lg) on ATR crystal (ZnSe) surface was studied by two-dimensional (2D) correlation ATR/FTIR spectroscopy. More bands were resolved by 2D correlation spectroscopy compared to the results from second derivative (SD) and Fourier self-deconvolution (FSD) analyses, but some of the new bands resolved may originate from bandwidth changes, wavenumber shifts, etc. The integrated/overall sequential order of the intensity changes of the four sub-bands in amide I region obtained from 2D correlation spectroscopy was not consistent with the experimental observation. Adsorption-induced conformational changes did not occur until 10 min of adsorption of β-Lg molecules on the ZnSe crystal surface. The relative contents of the low-wavenumber component of the antiparallel β-strands (1627cm(-1)) and random segments with α-helix (1651cm(-1)) changed prior to β-turns (1666cm(-1)) and the high-wavenumber component of the antiparallel β-strands (1684cm(-1)). More specifically, from about 10 to 15min of adsorption, the loss content of the low-wavenumber component of the antiparallel β-strands (1627cm(-1)) was simultaneously transformed into random segments (1651cm(-1)). After 20 min of adsorption, the content of β-turns (1666cm(-1)) started to decrease, and the loss of β-turns (1666cm(-1)) was also transformed into antiparallel β-strands (high-wavenumber component at 1684cm(-1)) in a cooperative way as the β-Lg molecules become more extended.     

Can the light scattering depolarization ratio of small particles be greater than 1/3?

According to the theory of light scattering by small randomly oriented particles, the depolarized ratio of the scattered intensities, I(vh)/I(vv), cannot exceed 1/3. Here we show that this conclusion does not hold for nonspherical plasmon resonant metal particles. Our analysis is based on the Rayleigh approximation and the exact T-matrix method as applied to spheroids and circular cylinders with semispherical ends. For small particles, the condition I(vh)/I(vv) >1/3 can be satisfied within the upper left quadrant of the complex relative dielectric permeability Real(eps) < -2 (rods) and within the upper unit semicircle centered at Real(eps) = -1 (disks). For gold nanorods with the axis ratio exceeding 2, the maximal theoretical values I(vh)/I(vv) lie between 1/3 and 3/4 at wavelengths of 550-650 nm. The extinction and static light scattering spectra (450-850 nm, at 90 degrees degrees) as well as the depolarized ratio of He-Ne laser light scattering were measured with gold nanospheres (the average diameters of 21, 29, and 46 nm) and nanorods (the longitudinal plasmon resonance peak positions at 655, 692, and 900 nm). The measured depolarization ratios of nanospheres (0.07-0.16) and nanorods (0.3-0.48) are in good agreement with theoretical calculations based on estimations of the average particle size and shape.     

Alkynylgold(I) C3-Chiral Concave Complexes: Aggregation and Luminescence

Chiral gold(I) acetylide trinuclear complexes 1 – 3 based on the cyclotribenzylene platform and terminal PR₃ ligands (R=Ph, Et, and Cy, respectively), were characterized and their light emission studied. They exhibited long-lived blue phosphorescence in CHCl₃ and a weak fluorescence in the UV. In MeOH/CHCl₃ mixtures of >1:1 volume ratio, 1 and 2 exhibited a new emission band at ca. 540 nm that developed at the expense of the UV emission. DLS studies demonstrated the presence of molecular aggregates of Ø 30–80 nm. The green emission observed in MeOH-rich solvent mixtures was therefore induced by aggregation, and could originate from Au⋅⋅⋅Au interactions. The AIE spectrum of 3 was observed only in solutions containing 99 % of MeOH, and correlated with its solid state emission. The AIE profiles of the enantiomers of 1 differed from that of rac- 1 , suggesting that the latter is a true racemate.     

Generation current of charged micelles in nonaqueous liquids: measurements and simulations

Electrically charged species in nonaqueous media still hold many questions. Recent studies and applications show the need for a better understanding of the origin and nature of these charged species. Transient current measurements have been used to study the conductivity of nonaqueous liquid containing charged inverse micelles. At small time scales (1-100 ms) drift and diffusion of charged species are the main contributions to the measured current. At larger timescales (above 1 s) a nonzero quasi steady-state current at high voltages (above 0.5 V) remains. This indicates that besides drift and diffusion an additional process occurs. The dependence of the quasi steady-state current on the applied voltage, micelle concentration, and device thickness has been investigated. Experimental results have been compared to simulations and analytical calculations. It is concluded that the quasi steady-state current results from a bulk disproportionation reaction between neutral micelles that generates charged micelles. And therefore this technique allows for direct quantification of the reaction kinetics from which the charged species originate.     

Gas-phase ligand loss and ligand substitution reactions of platinum(II) complexes of tridentate nitrogen donor ligands

The source of protons associated with the ligand loss channel of HX((n - 1)+) from [Pt(II)(dien)X](n+) (X = Cl, Br and I for n = 1 and X = NC(5)H(5) for n = 2) in the gas phase was investigated by deuterium-labelling studies. The results of these studies indicate that these protons originate from both the amino groups and the carbon backbone of the dien ligand. In some instances (e.g. X = Br and I), the protons lost from the carbon backbone can be even more abundant than the protons lost from the amino groups. The gas-phase substitution reactions of coordinatively saturated [Pt(II)(L(3))L(a)](2+) complexes (L(3) = tpy or dien) were also examined using ion-molecule reactions. The outcome of the ion-molecule reactions depends on both the ancillary ligand (L(3)) as well as the leaving group (L(a)). [Pt(II)(tpy)L(a)](2+) complexes undergo substitution reactions, with a faster rate when L(a) is a good leaving group, while the [Pt(II)(dien)L(a)](2+) complex undergoes a proton transfer reaction.     

Enzymatic synthesis of an indole diterpene by an oxidosqualene cyclase: mechanistic, biosynthetic, and phylogenetic implications

Petromindole (1) is an unusual indole diterpene that bears a triterpene-like carbon skeleton, suggesting biogenesis from 3-(omega-oxido-geranylgeranyl)indole (4). We found that lupeol synthase (LUP1) from Arabidopsis thaliana cyclizes 4 to 1. Chiral HPLC comparisons of racemic 1 (from biomimetic cyclization of N-pivaloyl-4) with the LUP1 product and authentic 1 established the absolute stereochemistry of petromindole (3S) as that of cyclic triterpenes. Quantum mechanical calculations and conformational analysis of intermediates in the cyclization of 4 to 1 indicated that petromindole biosynthesis differs fundamentally from that of other indole diterpenes. This analysis revealed that radarins also originate from cyclization of 4 but undergo a backbone rearrangement rather than annulation to indole. The combined results support our hypothesis that native fungal petromindole synthase evolved from a pentacyclic triterpene synthase distant from most other indole diterpene synthases.     

Calculated volume and energy profiles for water exchange on t2g6 rhodium(III) and iridium(III) hexaaquaions: conclusive evidence for an Ia mechanism

An I(a) mechanism was assigned for water exchange on the hexaaquaions Rh(OH(2))(6)(3+) and Ir(OH(2))(6)(3+) on the basis of negative Delta V(++) experimental values (-4.2 and -5.7 cm(3) mol(-1), respectively). The use of Delta V(++) as a mechanistic criterion was open to debate primarily because Delta V(++) could be affected by extension or compression of the nonparticipating ligand bond lengths on going to the transition state of an exchange process. In this paper, volume and energy profiles for two distinct water exchange mechanisms (D and I(a)) have been computed using quantum chemical calculations which include hydration effects. The activation energy for Ir(OH(2))(6)(3+) is 32.2 kJ mol(-1) in favor of the I(a) mechanism (127.9 kJ mol(-1)), as opposed to a D pathway; the value for the I(a) mechanism being close to Delta H(++) and Delta G(++) experimental values (130.5 kJ mol(-1) and 129.9 kJ mol(-1) at 298 K, respectively). Volumes of activation, computed using Connolly surfaces and for the I(a) pathway (DeltaV(++)(calc) = -3.9 and -3.5 cm(3) mol(-1), respectively, for Rh(3+) and Ir(3+)), are in agreement with the experimental values. Further, it is demonstrated for both mechanisms that the contribution to the volume of activation due to the changes in bond lengths between Ir(III) and the spectator water molecules is negligible: -1.8 for the D, and -0.9 cm(3) mol(-1) for I(a) mechanism. This finding clarifies the debate about the interpretation of Delta V(++) and unequivocally confirms the occurrence of an I(a) mechanism with retention of configuration and a small a character for both Rh(III) and Ir(III) hexaaquaions.     

Determination of sugar structures in solution from residual dipolar coupling constants: methodology and application to methyl beta-D-xylopyranoside

We have developed methodology for the determination of solution structures of small molecules from residual dipolar coupling constants measured in dilute liquid crystals. The power of the new technique is demonstrated by the determination of the structure of methyl beta-d-xylopyranoside (I) in solution. An oriented sample of I was prepared using a mixture of C(12)E(5) and hexanol in D(2)O. Thirty residual dipolar coupling constants, ranging from -6.44 to 4.99 Hz, were measured using intensity-based J-modulated NMR techniques. These include 15 D(HH), 4 (1)D(CH), and 11 (n)D(CH) coupling constants. The accuracy of the dipolar coupling constants is estimated to be < +/- 0.02 Hz. New constant-time HMBC NMR experiments were developed for the measurement of (n)D(CH) coupling constants, the use of which was crucial for the successful structure determination of I, as they allowed us to increase the number of fitted parameters. The structure of I was refined using a model in which the directly bonded interatom distances were fixed at their ab initio values, while 16 geometrical and 5 order parameters were optimized. These included 2 CCC and 6 CCH angles, and 2 CCCC and 6 CCCH dihedral angles. Vibrationally averaged dipolar coupling constants were used during the refinement. The refined solution structure of I is very similar to that obtained by ab initio calculations, with 11 bond and dihedral angles differing by 0.8 degrees or less and the remaining 5 parameters differing by up to 3.3 degrees . Comparison with the neutron diffraction structure showed larger differences attributable to crystal packing effects. Reducing the degree of order by using dilute liquid crystalline media in combination with precise measurement of small residual dipolar coupling constants, as shown here, is a way of overcoming the limitation of strongly orienting liquid crystals associated with the complexity of (1)H NMR spectra for molecules with more than 12 protons.