基于纳米金胶标记DNA探针的电化学DNA传感器研究

以纳米金胶为标记物,将其标记于人工合成的5-端巯基修饰的寡聚核苷酸片段上,制成了具有电化学活性的金胶标记DNA电化学探针;在一定条件下,使其与固定在玻碳电极表面的靶序列进行杂交反应,利用ssDNA与其互补链杂交的高度序列选择性和极强的分子识别能力,以及纳米金胶的电化学活性,实现对特定序列DNA片段的电化学检测以及对DNA碱基突变的识别.     

非固定化水相中直接DNA分子电化学识别

DNA分子固定技术和杂交信号转换技术是传统电化学DNA传感器的两大关键因素.特别是DNA分子在电极表面的固定直接影响到检测灵敏度,选择性和重现性,往往需要选择复杂的化学反应过程将DNA识别分子共价键和到电极表面,以此提高DNA识别层的稳定性和可重复行;以及设计特殊的空间手臂分子链接到DNA识别分子上,以此提高它在电极界面的的空间自由度,进而提高与水相中互补DNA的杂交效率.     

电化学石英晶体微天平研究界面电场对DNA杂交的影响

采用电化学石英晶体微天平, 现场监测不同界面电场下完全匹配的靶标DNA和不完全匹配的靶标DNA分别与寡聚核苷酸探针分子杂交的过程. 结果表明, 电极表面荷正电时DNA表观杂交效率比电极表面荷负电时高, 但假阳性比较显著; 而电极表面荷负电时能有效地抑制错配杂交. 探讨了引入界面电场后探针分子取向和微观作用力对DNA杂交的影响.     

基于主客体识别技术构建的DNA电化学传感识别灯塔

传统的电化学DNA生物传感技术通常包括以下3个步骤,即电极表面探针DNA的固定、固液两相间DNA的杂交反应和电化学信号的读出,由于探针和目标序列的杂交过程发生在两相间,所以降低了杂交效率.在此,我们基于主客体识别和分子信标技术,设计了一种新型的电化学DNA传感器,可实现DNA在均一水相中的杂交反应,然后杂交体被捕获到电极表面进行电化学检测,具有高的灵敏度和选择性.     

DNA修饰电极的研究(ⅠΧ)——DNA探针在金基底上的固定、表征及其表面分子杂交

采用巯基化合物自组装 /共价键合反应的逐层固定方法将双链 DNA固定到金表面得到 DNA修饰电极 ,并对该电极表面进行了电化学和 X射线光电子能谱表征 .研究了电极表面固定化 DNA的表面分子杂交 .对开发电化学基因诊断芯片和基因传感器具有一定意义     

用于DNA杂交检测的丝网印刷型生物传感器的研究

将单链DNA(ssDNA)固定到丝网印刷碳电极上构成电化学DNA传感器,采用电化学指示剂,建立DNA杂交的检测方法.Co(phen)33+电化学指示剂通过钴盐与配体邻菲罗啉络合制备,采用等离子发射光谱法(ICP-AES)和核磁共振法(NMR)表征功能基团,采用循环伏安法(CV)分析指示剂的电化学特性,并以此为基础研究ssDNA在电极表面的固定及DNA杂交过程.本研究探讨了直接吸附、静电吸附与键合等3种ssD-NA在电极表面的固定方法,结果表明,静电吸附法和键合法具有较高的ssDNA固定量,采用静电吸附法固定探针的电极杂交目标DNA后,Co(phen)33+易于嵌入双链DNA (dsDNA)中,CV峰电流(ip)信号随目标DNA浓度增加.本研究采用静电吸附ssDNA的电极检测DNA杂交,实验表明,当探针固定液中ssDNA浓度为5 mg/L时,目标DNA浓度在6.65×10- 8～4.26× 10-6mol/L范围内,Co(phen)33+在dsDNA修饰电极上ip值与DNA浓度呈良好的线性关系,R2为0.9819.本研究为建立新的微生物分子分型手段提供了初步依据.     

基于纳米金探针和基因芯片的DNA检测新方法

运用荧光纳米金探针和基因芯片杂交建立一种新的DNA检测方法. 荧光纳米金探针表面标记有两种DNA探针: 一种为带有Cy5荧光分子的信号探针BP1, 起信号放大作用; 另一种为与靶DNA一部分互补的检测探针P532, 两种探针比例为5∶1. 当靶DNA存在时, 芯片上捕捉探针(与靶DNA的另一部分互补)通过碱基互补配对结合靶DNA, 将靶DNA固定于芯片上; 荧光纳米金探针通过检测探针与靶DNA及芯片结合, 在芯片上形成“三明治”复合结构, 最后通过检测信号探针上荧光分子的信号强度来确定靶DNA的量. 新方法检测灵敏度高, 可以检测浓度为1 pmol/L的靶DNA, 操作简单, 检测时间短. 通过改进纳米金探针的标记和优化杂交条件, 可进一步提高核酸检测的灵敏度, 这将在核酸检测方面具有重要的应用价值.     

功能化纳米金增强的DNA电化学检测和序列分析

用冠以大量二茂铁的纳米金微粒 /抗生蛋白链菌素结合物为标记物 ,将其标记于生物素修饰的寡聚核苷酸片段上 ,制成了具有电化学活性和纳米金放大作用的DNA电化学生物传感器 .首先采用巯基DNA和巯基烷烃混合自组装膜制备了金修饰电极 ,将探针DNA分子固定在了电极表面 ,运用杂交原则结合靶点分子在电极表面形成了双螺旋的DNA链 ,然后借助抗生蛋白链菌素和生物素之间的强亲和作用 ,引入了功能化的纳米金 .通过伏安法测定了修饰在纳米金上的二茂铁的氧化还原电流 ,可以识别和测定溶液中互补的靶点DNA ,17 mer靶点DNA的浓度在 0 .0 0 1～ 10nmol/L范围内有线性关系 ,检测限可达 0 .75× 10 -12 mol/L .     

基于金纳米粒子的QCM实时检测DNA错配的研究

利用石英晶体微天平（QCM）技术,用双硫醇分子作为连接剂,将金纳米粒子固定于金电极表面,以人类p53基因片断为DNA探针,研究了其在QCM金电极表面的固定、杂交和错配,重点探讨了金纳米粒子修饰的DNA错配碱基个数和错配位点对杂交的影响。在实验条件下,金纳米粒子在QCM金电极表面的修饰使其灵敏度得到了明显提高;而且,错配碱基个数和错配碱基位点的差异都对杂交产生了不同程度的影响。     

新型超支状液晶核酸传感器用于p53突变基因的检测

基于核酸杂交链式反应影响液晶取向的原理, 构建了一种新型的超支状液晶核酸传感器用于检测p53突变基因. 本文突破传统构建超支状分子的方式, 采用杂交链式反应方法, 以目标序列p53突变基因作为引发剂, 3种不同的发卡探针Hairpin A, Hairpin B和Hairpin C为单体, 在温和的条件下, 通过改变单体的浓度和反应时间自发杂交组装形成尺寸和分子量可控的超支状DNA(branched-like DNA, bDNA). 借助捕获探针将该超支状DNA连接到液晶传感基底表面, 观察液晶分子取向改变前后的光学信号, 实现了p53基因含249密码子突变序列的快速检测. 本方法有望为核酸诊断的发展提供一种新的方法和思路.     

用盐酸阿霉素作为嵌入剂石墨电极伏安法识别测定DNA片段的研究

用盐酸阿霉素作为嵌入剂石墨电极伏安法识别测定ＤＮＡ片段的研究方禹之,刘盛辉,何品刚（华东师范大学化学系,上海,２０００６２）关键词ＤＮＡ,嵌入剂,盐酸阿霉素,伏安法核酸分子杂交技术是近年来发展起来的检测ＤＮＡ分子的一种重要手段,目前主要采用的放射性同...     

碳纳米管修饰金电极检测特定序列DNA

利用化学偶联法将末端修饰氨基的寡聚核苷酸固定在表面修饰有羧基化碳纳米管(CNTs-COOH)的金电极表面, 制备新型核酸探针, 可以特异性结合目标单链寡聚核苷酸. 以阿霉素作为嵌合指示剂, 利用示差脉冲法测定杂交的结果. 经过实验条件的优化, 测定DNA浓度在1.0×10^－6～1.0×10^－9 mol/L呈良好的线性关系. 检测限为: 2.54×10^－10 mol/L. 碳纳米管特有的纳米结构对检测结果的放大作用, 提高了该传感器的检测限和灵敏度.     

CHARACTERISATION OF TWO MONOCLONAL ANTIBODIES SPECIFIC FOR DIMERISED AND NON-DIMERISED ADJACENT THYMIDINES IN SINGLE STRANDED DNA*

Abstract— Hybrid cell lines (hybridomas) have been isolated from fusions between P3-NS1-1-Ag4-1 mouse myeloma cells and spleen cells from BALB/c mice hyperimmunised with UV-irradiated single-stranded DNA (UVssDNA) and UV-irradiated polydeoxythymidylic acid (UVpolydT). Monoclonal antibodies from two different hybridomas are characterised in the present report by competitive inhibition with different synthetic polynucleotides and oligonucleotides. The first antibody, designated αUVssDNA-1, recognises thymidine dimers in a polynucleotide or an oligonucleotide sequence at least four nucleotides long but not isolated thymidine dimers, suggesting that it recognises the conformational change associated with thymidine dimers. The second antibody, designated αssDNA-2, recognises unirradiated or UV-irradiated tracts of thymidine, but will not crossreact with tracts of other nucleotides (A, G, C, A.T, G.C, C.U, U). Inhibition of binding of αUVssDNA-1 to [³H]-UVssDNA by calf thymus UVssDNA is dependent on UV exposure and wavelength as expected from the antigenic determinant.     

Alkylation of inorganic oxo compounds and insights on preventing DNA damage

Metabolism of food- and tobacco-borne procarcinogens results in the exposure of DNA to toxic alkylating agents. These assaults can bring about DNA alkylation damage, mutations, and cancer. Dietary inorganic compounds such as selenium and vanadium are known to prevent cancer, possibly by reacting directly with alkylating agents, thereby preventing DNA damage. To understand potential interactions between oxo species and alkylating toxins, we reacted a series of alkylating agents with varied classes of oxo compounds (i.e., vanadates, selenate, phosphate, sulfate, acetate, nitrate, and nitrite). A new organic-soluble selenate, [(C6H5)4P]3(O3SeOCH2OSeO3)(HSeO4), was synthesized and characterized for these studies. Vanadates were found to convert ethylating agents into ethanol, whereas other anions formed esters upon alkylation. General trends show that oxo anions of the greatest charge density were the most reactive. These studies suggest that the design of new compounds for cancer prevention should incorporate reactive oxo groups with high anionic charge density.     

In situ evaluation of heavy metal-DNA interactions using an electrochemical DNA biosensor

Heavy metal ions, lead, cadmium and nickel, are well known carcinogens with natural different origins and their direct mode of action is still not fully understood. A dsDNA-electrochemical biosensor, employing differential pulse voltammetry, was used for the in situ evaluation of Pb2+, Cd2+ and Ni2+ interaction with dsDNA. The results confirm that Pb2+, Cd2+ and Ni2+ bind to dsDNA, and that this interaction leads to different modifications in the dsDNA structure. These modifications were electrochemically recognized as changes in the oxidation peaks of guanosine and adenosine bases. Using homopolynucleotides of guanine and adenine it has been proved that the interaction between Pb2+ and DNA causes oxidative damage and preferentially takes place at adenine-containing segments, with the formation of 2,8-dihydroxyadenine, the oxidation product of adenine residues and a biomarker of DNA oxidative damage. The Pb2+ bound to dsDNA can still undergo oxidation. The interaction of Cd2+ and Ni2+ causes conformational changes, destabilizing the double helix, which can enable the action of other oxidative agents on DNA.     

Tyrosine nitration site specificity identified by LC/MS in nitrite-modified collagen type IV

Non-enzymatic nitrite induced collagen cross-linking results in changes reminiscent of age-related damage and parallels the well-known model system, non-enzymatic glycation. We have recently observed that nitrite modification of basement membrane proteins can induce deleterious effects on overlying retinal pigment epithelial cells in studies relevant to age-related macular degeneration. The present work was undertaken in order to confirm 3-nitro-tyrosine (3-NT) as a product of the reaction and to identify the site specificity of nitration in collagen IV, a major component of basement membranes. Human collagen type IV was modified via incubation with 200 mM NaNO(2) (pH=7.38) for one week at 37(o)C. The modified protein was prepared in 2 different ways, including acid hydrolysis and trypsin digestion for site specificity determination. The samples were analyzed by LC/MS using a C(12) RP column. Site specificity was determined from tandem MS/MS data utilizing TurboSEQUEST software and the Swiss-Prot sequence database. 3-NT was detected in protein digests and acid hydrolysates of nitrite modified collagen IV. Positive identification with standard 3-NT was confirmed by identical R(t), lambda(max)=279 nm and 355 nm, and m/z=227. Analyses of tryptic digests identified four sites of tyrosine nitration, alpha1(IV)Y348, alpha1(IV)Y534, alpha2(IV)Y327, and alpha2(IV)Y1081. These sites are located in the triple-helical region of the protein and provide clues regarding potential sites for nitrite modification in collagen type IV.     

游离氨抑制协同过程控制实现渗滤液短程硝化

采用UASB-SBR生化系统处理高氮晚期渗滤液为研究对象,在获得稳定有机物和氮去除的前提下,考察了采用游离氨(FA)协同过程控制对实现渗滤液长期稳定短程硝化的可行性,建立实现与维持SBR系统内稳定短程硝化的途径及方法.试验结果表明:经过36d的运行,SBR系统的亚硝积累率始终稳定在90%以上,获得了稳定的短程硝化.游离氨和过程控制的协同作用是实现与维持SBR反应器稳定短程硝化的决定因素,以DO,ORP和pH作为渗滤液短程硝化反硝化的过程控制参数是可行的,在充分利用较高FA抑制亚硝酸盐氧化菌活性的前提下,过程控制能够准确判断硝化终点,避免过度曝气破坏短程硝化,从而为氨氧化菌(AOB)的生长创造有利条件,有效抑制亚硝酸盐氧化菌(NOB)的生长并逐渐从系统中淘洗出去,实现了硝化菌种群的优化,荧光原位杂交技术(FISH)检测也证明这一点.在此基础上,通过批次实验考察了微生物种群的反硝化动力学特性,符合Monod动力学方程,NO2--N基质最大比利用速率和半饱和常数分别为0.44gNO2--NgVSS-1d-1和15.8mgL-1.     

DNA and DNAzyme-mediated 2D colloidal assembly

DNA-mediated interactions present a significant opportunity for controlling colloidal self-assembly. Using microcontact printing to achieve spatial control of DNA-surface patterning and DNA-functionalized polystyrene colloids, we report that DNA hybridization can be utilized for sequence-specific reversible self-assembly of well-ordered 2D colloidal arrays. Two essential indicators of DNA-hybridization mediated assembly were confirmed: thermal reversibility and sequence specificity. The arrays melted at 50 degrees C and reassembled when introduced to fresh colloid suspension, and sequence specificity with <1% nonspecific binding was confirmed using fluorescent polystyrene colloids. The real-time assembly of the colloids onto the periodically patterned substrate was monitored by simple laser diffraction to obtain assembly kinetics. Maximum surface coverage of DNA-mediated assembly was determined to be 0.593 for DNA-functionalized 100 nm polystyrene colloids, and 90% of the assembly was complete after 6.25 h of hybridization in 50 mM NaCl Tris buffer. We also demonstrate that DNAzymes, catalytic DNA molecules, can be incorporated into the design, and in the presence of 10 microM Pb(2+), the hybridization-induced array assembly can be disrupted via DNAzyme activity.     

Electrochemical DNA Hybridization Detection Using DNA Cleavage

We report the new method for detection of DNA hybridization using enzymatic cleavage. The strategy is based on that S1 nuclease is able to specifically cleave only single strand DNA, but not double strand DNA. The capture probe DNA, thiolated single strand DNA labeled with electroactive ferrocene group, was immobilized on a gold electrode. After hybridization of target DNA of complementary and noncomplementary sequences, nonhybridized single strand DNA was cleaved using S1 nuclease. The difference of enzymatic cleavage on the modified gold electrode was characterized by cyclic voltammetry and differential pulse voltammetry. We successfully applied this method to the sequence‐selective discrimination between perfectly matched and mismatched target DNA including a single‐base mismatched target DNA. Our method does not require either hybridization indicators or other exogenous signaling molecules which most of the electrochemical hybridization detection systems require.     

Simultaneous direct electrochemiluminescence and catalytic voltammetry detection of DNA in ultrathin films

Direct electrochemiluminescence (ECL) involving DNA was demonstrated in 10 nm films of cationic polymer [Ru(bpy)(2)(PVP)(10)](2+) assembled layer-by-layer with DNA. A square wave voltammetric waveform oxidized the Ru(II) sites in the metallopolymer to Ru(III), and ECL was measured simultaneously with catalytic voltammetric peaks in a simple apparatus. Significant ECL generation occurred only when guanine bases were present on oligonucleotides in the films. This result along with knowledge of proposed ECL pathways suggests that guanine radicals initially formed by catalytic oxidation of guanines by Ru(III) react with the metallopolymer to produce electronically exited Ru(II) sites in the film. ECL and catalytic SWV peaks were sensitive to oligonucleotide hybridization and chemical DNA damage. Simultaneous linear growth of ECL and SWV peaks occurred after incubation with known DNA damage agent styrene oxide over 20 min. The estimated detection limit was 1 damaged DNA base in 1000. Control incubations of metallopolymer/ds-DNA films in buffer containing unreactive toluene resulted in no significant changes of the ECL or SWV peaks.