Thuggacins, macrolide antibiotics active against Mycobacterium tuberculosis: isolation from myxobacteria, structure elucidation, conformation analysis and biosynthesis

Two novel antibiotics, thuggacin A (1) and B (2), were isolated from the myxobacterium Sorangium cellulosum. 1 and 2 are unique thiazole-containing macrolides with side chains on both sides of the lactone group. Upon standing in solution, thuggacin A (1) rearranges by acyl migration of the lactone group to give a mixture with thuggacins B (2) and C (3). NOEs and vicinal coupling constants within the lactone ring provided distinct data for the generation of a structure model by PM3 calculations, which allowed an analysis of the conformation in solution and the relative configuration of six asymmetric centres. A minor sorangium metabolite was identified as 13-methyl-thuggacin A (4). Furthermore, two natural thuggacin variants, 5 and 6, were found in another myxobacterium, Chondromyces crocatus. In these variants, one side chain is replaced by a methyl group and a hydroxy group is repositioned to give a primary alcohol at the former methyl site, in an alpha position with respect to the thiazole ring. 1 proved to be active against clinical isolates and reference strains of Mycobacterium tuberculosis. Preliminary studies on the mechanism of action indicate inhibition of the cellular electron-transport chain.     

Synthesis,Profiling, and Bioactive Conformation of trans‐Cyclopropyl Epothilones

A series of new 3‐deoxy‐C(12),C(13)‐trans‐cyclopropyl‐epothilones have been prepared, bearing benzothiazole, quinoline, thiazol‐5‐ylvinyl, or isoxazol‐3‐ylvinyl side chains. For analogs with fused aromatic side chains, macrocyclic ring‐closure was based on ring‐closing olefin metathesis (RCM) of a precursor incorporating the fully elaborated heavy atom framework of the target structure (including the side chain moiety), while side chain attachment for the thiazole and isoxazole‐containing 16‐desmethyl analogs was performed only after establishment of the macrolactone core. Two approaches were elaborated for a macrocyclic aldehyde as the common precursor for the latter analogs that involved ring‐closure either by RCM or by macrolactonization. Benzothiazole‐ and quinoline‐based analogs were found to be highly potent antiproliferative agents; the two analogs with a thiazol‐5‐ylvinyl or an isoxazol‐3‐ylvinyl side chain likewise showed good antiproliferative activity but were significantly less potent than the parent epothilone A. Surprisingly, the desaturation of the C(10)?C(11) bond in these analogs was associated with a virtually complete loss in antiproliferative activity, which likely reflects a requirement for a ca. 60 ° C(10)?C(11) torsion angle in the tubulin‐bound conformation of 12,13‐trans‐epothilones.     

Stereoselective synthesis of the C1–C12 fragment of the thuggacins

A concise asymmetric synthesis of the C1–C12 fragment of the antibacterial natural product thuggacins has been achieved. The stereochemistry of this fragment was established efficiently via stereoselective reduction and Evans-aldol condensation. Hanztsch’s method and a Horner–Wadsworth–Emmnons reaction were employed for thiazole formation and the construction of the E-α,β-unsaturated double bond.     

Total Synthesis of (−)‐Zampanolide and Structure–Activity Relationship Studies on (−)‐Dactylolide Derivatives

A new total synthesis of the marine macrolide (?)‐zampanolide ( 1 ) and the structurally and stereochemically related non‐natural levorotatory enantiomer of (+)‐dactylolide ( 2 ), that is, ent‐ 2 , has been developed. The synthesis features a high‐yielding, selective intramolecular Horner–Wadsworth–Emmons (HWE) reaction to close the 20‐membered macrolactone ring of 1 and ent‐ 2 . The β‐keto phosphonate/aldehyde precursor for the ring‐closure reaction was obtained by esterification of a ω‐diethylphosphono carboxylic acid fragment and a secondary alcohol fragment incorporating the THP ring that is embedded in the macrocyclic core structure of 1 and ent‐ 2 . THP ring formation was accomplished through a segment coupling Prins‐type cyclization. Employing the same overall strategy, 13‐desmethylene‐ent‐ 2 as well as the monocyclic desTHP derivatives of 1 and ent‐ 2 were prepared. Synthetic 1 inhibited human cancer cell growth in vitro with nM IC₅₀ values, while ent‐ 2 , which lacks the diene‐containing hemiaminal‐linked side chain of 1 , is 25‐ to 260‐fold less active. 13‐Desmethylene‐ent‐ 2 as well as the reduced versions of ent‐ 2 and 13‐desmethylene‐ent‐ 2 all showed similar cellular activity as ent‐ 2 itself. The same activity level was attained by the monocyclic desTHP derivative of 1 . Oxidation of the aldehyde functionality of ent‐ 2 gave a carboxylic acid that was converted into the corresponding N‐hexyl amide. The latter showed only μM antiproliferative activity, thus being several hundred‐fold less potent than 1 .     

Theoretical Study on Second‐order Nonlinear Optical Properties of Substituted Thiazole Derivatives

On the basis of ZINDO program, we have designed a program to calculate the nonlinear second‐order polarizability β_yk and β_μ according to the SOS expression. The second‐order nonlinear optical properties of 4‐nitro‐4′‐dimethylamino‐stilbene and a series of its thiazole derivatives were studied. The calculated results were that: When replacing a benzene ring in 4‐nitro‐4′‐dimethylamino‐stilbene by a thiazole ring, the influence on β values depends on the position of thiazole ring. When the thiazole ring connects with nitro group (acceptor), the β values increase significantly compared with corresponding stilbene derivatives. The β values of 2‐(p‐donor‐β‐styryl)‐5‐nitro‐thiazole derivatives (2–7) are larger than those of 2‐(p‐nitro‐β‐styryl)‐5‐donor‐thiazole derivatives (8–13) and 2‐(p‐donor‐phenyl)‐azo‐5‐nitro‐thiazole derivatives (14–19). The 2‐(p‐donor‐β‐styryl)‐5‐nitro‐thiazole derivatives (2–7) are good candidates as chromophores duo to their high nonlinearities and potential good thermal stability.     

Efficient and Selective Formation of Macrocyclic Disubstituted Z Alkenes by Ring‐Closing Metathesis (RCM) Reactions Catalyzed by Mo‐ or W‐Based Monoaryloxide Pyrrolide (MAP) Complexes: Applications to Total Syntheses of Epilachnene,Yuzu Lactone,Ambrettolide, Epothilone C,and Nakadomarin A

The first broadly applicable set of protocols for efficient Z‐selective formation of macrocyclic disubstituted alkenes through catalytic ring‐closing metathesis (RCM) is described. Cyclizations are performed with 1.2–7.5 mol % of a Mo‐ or W‐based monoaryloxide pyrrolide (MAP) complex at 22 °C and proceed to complete conversion typically within two hours. Utility is demonstrated by synthesis of representative macrocyclic alkenes, such as natural products yuzu lactone (13‐membered ring: 73 % Z) epilachnene (15‐membered ring: 91 % Z), ambrettolide (17‐membered ring: 91 % Z), an advanced precursor to epothilones C and A (16‐membered ring: up to 97 % Z), and nakadomarin A (15‐membered ring: up to 97 % Z). We show that catalytic Z‐selective cyclizations can be performed efficiently on gram‐scale with complex molecule starting materials and catalysts that can be handled in air. We elucidate several critical principles of the catalytic protocol: 1) The complementary nature of the Mo catalysts, which deliver high activity but can be more prone towards engendering post‐RCM stereoisomerization, versus W variants, which furnish lower activity but are less inclined to cause loss of kinetic Z selectivity. 2) Reaction time is critical to retaining kinetic Z selectivity not only with MAP species but with the widely used Mo bis(hexafluoro‐tert‐butoxide) complex as well. 3) Polycyclic structures can be accessed without significant isomerization at the existing Z alkenes within the molecule.     

Photoluminescent and Liquid‐Crystalline Properties of Donor–Acceptor‐Type 2,5‐Diarylthiazoles

The synthesis of donor–acceptor‐type 2,5‐diarylthiazoles that bear electron‐donating N,N‐dialkylamine and electron‐withdrawing cyano groups at the 2‐ and 5‐position, respectively, were carried out with transition‐metal‐catalyzed C? H arylation reactions developed by us. The compounds were synthesized by the C? H arylation of unsubstituted thiazole at the 2‐position with a palladium/copper catalyst in the presence of tetrabutylammonium fluoride (TBAF) as an activator. Further C? H arylation of the 2‐arylated thiazole at the 5‐position was carried out by the palladium‐catalyzed reaction in the presence of silver(I) fluoride to afford the donor–acceptor‐type 2,5‐diarylthiazoles with N,N‐dialkylamine groups of different chain lengths. The UV/Vis absorption, photoluminescence, and electrochemical behavior were similar regardless of chain length, whereas liquid‐crystalline behavior and thermal characteristics were found to be dependent on the alkyl‐chain length. The compounds with N,N‐diethylamine or N‐butyl‐N‐methyl groups showed a stable liquid‐crystalline phase over a wide temperature range as well as higher stability to thermal decomposition.     

Total Synthesis and Functional Evaluation of Fourteen Derivatives of Lysocin E: Importance of Cationic,Hydrophobic, and Aromatic Moieties for Antibacterial Activity

Lysocin E ( 1 ) is a structurally complex 37‐membered depsipeptide comprising 12 amino‐acid residues with an N‐methylated amide and an ester linkage. Compound 1 binds to menaquinone (MK) in the bacterial membrane to exert its potent bactericidal activity. To decipher the biologically important functionalities within this unique antibiotic, we performed a comprehensive structure‐activity relationship (SAR) study by systematically changing the side‐chain structures of l ‐Thr‐1, d ‐Arg‐2, N‐Me‐d ‐Phe‐5, d ‐Arg‐7, l ‐Glu‐8, and d ‐Trp‐10. First, we achieved total synthesis of the 14 new side‐chain analogues of 1 by employing a solid‐phase strategy. We then evaluated the MK‐dependent liposomal disruption and antimicrobial activity against Staphylococcus aureus by 1 and its analogues. Correlating data between the liposome and bacteria experiments revealed that membrane lysis was mainly responsible for the antibacterial functions. Altering the cationic guanidine moiety of d ‐Arg‐2/7 to a neutral amide, and the C7‐acyl group of l ‐Thr‐1 to the C2 or C11 counterpart decreased the antimicrobial activities four‐ or eight‐fold. More drastically, chemical mutation of d ‐Trp‐10 to d ‐Ala‐10 totally abolished the bioactivities. These important findings led us to propose the biological roles of the side‐chain functionalities.     

New 9,10‐Secosteroids from Biotransformations of Hyodeoxycholic Acid with Rhodococcus spp.

The biotransformations of hyodeoxycholic acid with various Rhodococcus spp. are reported. Some strains (i.e., Rhodococcus zopfii, Rhodococcus ruber, and Rhodococcus aetherivorans) are able to partially degrade the side chain at C(17) to afford 6α‐hydroxy‐3‐oxo‐23,24‐dinor‐5β‐cholan‐22‐oic acid ( 2 ; 23%) and 6α‐hydroxy‐3‐oxo‐23,24‐dinorchol‐1,4‐dien‐22‐oic acid ( 3 ; 23–30%), together with two new 9,10‐secosteroids 4 and 5 (10–45%), still bearing the partial side chain at C(17) and adopting an intramolecular hemiacetal form. In addition, the 9,10‐secosteroid 5 showed an unprecedented C(4)‐hydroxylation. The new secosteroids were fully characterized by MS, IR, NMR, and 2D‐NMR analyses.     

Synthesis and UCST‐type phase behavior of polypeptide with alkyl side‐chains in alcohol or ethanol/water solvent mixtures

A series of thermoresponsive polypeptides bearing 1‐butyl, 1‐hexyl, or 1‐dodecyl side‐chains (i.e., 6a ‐ 6c ) were synthesized by copper‐mediated 1,3‐dipolar cycloaddition with high grafting efficiency (>95%) between side‐chain “clickable” polypeptide, namely poly(γ‐4‐(propargoxycarbonyl)benzyl‐_L‐glutamate) ( 5 ) and 1‐azidoalkanes. 5 with different degree of polymerization (DP = 48–86) were prepared from triethylamine initiated ring‐opening polymerization of γ‐4‐(propargoxycarbonyl)benzyl‐_L‐glutamic acid based N‐carboxyanhydride ( 4 ). ¹H NMR, FTIR, and GPC results revealed the successful preparation of the resulting polypeptides. 6a ‐ 6c showed reversible UCST‐type phase behaviors in methanol, ethanol, and ethanol/water solvent mixtures depending on the polymer main‐chain length, alkyl side‐chain length, weight percentage of ethanol (f_w) in the binary solvent, and so forth. FTIR analysis revealed the presence of the van der Waals interaction between the alkyl pendants of polypeptides and alkyl groups of alcoholic solvents. Variable‐temperature UV‐vis spectroscopy revealed that the UCST‐type phase transition temperature (T_pt) increased as polymer main‐chain length or concentration increased. In ethanol/water solvent mixtures, polypeptide with short alkyl pendant (i.e., 1‐butyl group) and short main‐chain length (DP = 41) showed the widest f_w range and T_pts in the range of 61.0–71.1 °C. © 2016 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2016 , 54, 3425–3435     

Cationic ring‐opening polymerization of novel 1,3‐dehydroadamantanes with various alkyl substituents: Synthesis of thermally stable poly(1,3‐adamantane)s

Cationic ring‐opening polymerizations of 5‐alkyl‐ or 5,7‐dialkyl‐1,3‐dehydroadamantanes, such as 5‐hexyl‐ ( 4 ), 5‐octyl‐ ( 5 ), 5‐butyl‐7‐isobutyl‐ ( 6 ), 5‐ethyl‐7‐hexyl‐ ( 7 ), and 5‐butyl‐7‐hexyl‐1,3‐dehydroadamantane ( 8 ), were carried out with super Brønsted acids, such as trifluoromethanesulfonic acid or trifluoromethanesulfonimide in CH₂Cl₂ or n‐heptane. The ring‐opening polymerizations of inverted carbon–carbon bonds in 4–8 proceeded to afford corresponding poly(1,3‐adamantane)s in good to quantitative yields. Poly( 4–8 )s possessing alkyl substituents were soluble in 1,2‐dichlorobenzene, although a nonsubstituted poly(1,3‐adamantane) was not soluble in any organic solvent. In particular, poly( 8 ) exhibited the highest molecular weight at around 7500 g mol^?1 and showed excellent solubility in common organic solvents, such as THF, CHCl₃, benzene, and hexane. The resulting poly( 4–8 )s containing adamantane‐1,3‐diyl linkages showed good thermal stability, and 10% weight loss temperatures (T₁₀) were observed over 400 °C. © 2013 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2013 , 51, 4111–4124     

High performance polymer field‐effect transistors based on polythiophene derivative with conjugated side chain

Poly(3‐[2‐(5‐hexyl‐2‐thienyl) ethenyl]‐2,2′‐bithiophene) ( P2 , see Scheme 1 ) with conjugated thienylvinyl side chain was synthesized by copolymerization of the thiophene units with and without conjugated side chain with Pd‐catalyzed Stille coupling method. For comparison, P1 with the hexyl side chain instead of conjugated side chain was also synthesized. P2 film shows broad absorption in the visible region with absorption edge at about 700 nm. The solution‐processed polymer field‐effect transistors were fabricated and characterized with bottom gate/top contact geometry. The organic field‐effect transistors (OFET) based on P2 showed an average hole mobility of about 0.034 cm²/Vs (the highest value reached 0.061 cm²/Vs) upon annealing at about 180 °C for 30 min, with a threshold voltage of ?1.15 V and an on/off ratio of 10⁴ with n‐octadecyltrichlorosilane (OTS) modified SiO₂ substrate. In comparison, the OFET based on P1 displayed a hole mobility of 8.9 × 10^–4 cm²/Vs and an on/off ratio of 10⁴ with OTS modified SiO₂ substrate. The results indicate that the polythiophene derivative with conjugated thienylvinyl side chain is a promising polymer for the application in polymer field‐effect transistors. © 2009 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 47: 5304–5312, 2009     

A ring-closing metathesis (RCM)-based approach to mycolactones A/B

The total synthesis of the mycobacterial toxins mycolactones A/B ( 1 a / b ) has been accomplished based on a strategy built around the construction of the mycolactone core through ring‐closing metathesis. By employing the Grubbs second‐generation catalyst, the 12‐membered core macrocycle of mycolactones, with a functionalized C2 handle attached to C11, was obtained in 60–80 % yield. The C‐linked upper side chain (comprising C12–C20) was completed by a highly efficient modified Suzuki coupling between C13 and C14, while the attachment of the C5‐O‐linked polyunsaturated acyl side chain was achieved by Yamaguchi esterification. Surprisingly, a diene containing a simple isopropyl group attached to C11 could not be induced to undergo ring‐closing metathesis. By employing fluorescence microscopy and flow cytometry techniques, the synthetic mycolactones A/B ( 1 a / b ) were demonstrated to display similar apoptosis‐inducing and cytopathic effects as mycolactones A/B extracted from Mycobacterium ulcerans. In contrast, a simplified analogue with truncated upper and lower side chains was found to be inactive.     

Synthesis and characterization of 4‐arm star side‐chain liquid crystalline polymers containing azobenzene with different terminal substituents via ATRP

4‐Arm star side‐chain liquid crystalline (LC) polymers containing azobenzene with different terminal substituents were synthesized by atom transfer radical polymerization (ATRP). Tetrafunctional initiator prepared by the esterification between pentaerythritol and 2‐bromoisobutyryl bromide was utilized to initiate the polymerization of 6‐[4‐(4‐methoxyphenylazo)phenoxy]hexyl methacrylate (MMAzo) and 6‐[4‐(4‐ethoxyphenylazo)phenoxy]hexyl methacrylate (EMAzo), respectively. The 4‐arm star side‐chain LC polymer with p‐methoxyazobenzene moieties exhibits a smectic and a nematic phase, while that with p‐ethoxyazobenzene moieties shows only a nematic phase, which derives of different terminal substituents. The star polymers have similar LC behavior to the corresponding linear homopolymers, whereas transition temperatures decrease slightly. Both star polymers show photoresponsive isomerization under the irradiation with UV–vis light. © 2007 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 45: 3342–3348, 2007     

Synthesis,cytotoxicity and anti‐metastatic properties of new pyridyl–thiazole arene ruthenium(II) complexes

A series of novel ruthenium(II)–cymene complexes ( 1 – 8 ) containing substituted pyridyl–thiazole ligands, [Ru(η⁶‐p‐cymene)(L)Cl]Cl (L = N,N‐chelating derivatives), have been synthesized and characterized using elemental analysis, infrared, ¹H NMR and ¹³C NMR spectroscopies and mass spectrometry. All these complexes not only display marked cytotoxicity in vitro against three different human cancer cell lines (HeLa, A549 and MDA‐MB‐231), but also exhibit promising anti‐metastatic activity at sub‐cytotoxic concentrations. Cell cycle analysis shows that the ruthenium(II) complex‐induced growth inhibition was mainly caused by S‐phase cell cycle arrest. Further protein level analysis suggests that compound 5 may exert antitumor activity via a p53‐independent mechanism.     

Halide salts of antimigraine agents eletriptan and naratriptan

Molecules of eletriptan hydrobromide monohydrate (systematic name: (1S,2R)‐1‐methyl‐2‐{5‐[2‐(phenylsulfonyl)ethyl]‐1H‐indol‐3‐ylmethyl}pyrrolidinium bromide monohydrate), C₂₂H₂₇N₂O₂S⁺·Br⁻·H₂O, (I), and naratriptan hydrochloride (systematic name: 1‐methyl‐4‐{5‐[2‐(methylsulfamoyl)ethyl]‐1H‐indol‐3‐yl}piperidinium chloride), C₁₇H₂₆N₃O₂S⁺·Cl⁻, (II), adopt conformations similar to other triptans. The C‐2 and C‐5 substituents of the indole ring, both of which are in a region of conformational flexibility, are found to be oriented on either side of the indole ring plane in (I), whilst they are on the same side in (II). The N atom in the C‐2 side chain is protonated in both structures and is involved in the hydrogen‐bonding networks. In (I), the water molecules create helical hydrogen‐bonded chains along the c axis. In (II), the hydrogen bonding of the chloride ions results in macrocyclic R₄²(20) and R₄²(24) ring motifs that form sheets in the bc plane. This structural analysis provides an insight into the molecular structure–activity relationships within this class of compound, which is of use for drug development.     

New tetramic acid derivatives from the deep-sea-derived fungus Cladosporium sp. SCSIO z0025

Eight new tetramic acid derivatives, cladosporiumins A–H (1–8) were isolated from a culture broth of Cladosporium sp. SCSIO z0025 derived from the deep-sea sediment collected from Okinawa Trough. Their structures were elucidated by extensive spectroscopic data analysis. Compounds 1–3 were unique 3-acyltetramic acids with a hexyl enic alcohol side chain and a six-membered lactone ring substituted at C-3 of the 2, 4-pyrrolidinedione skeleton. The absolute configurations of chiral carbons of the 2, 4-pyrrolidinedione unit in 1–4 and 7 were established by quantum chemical calculations of the electronic circular dichroism (ECD) spectra. And the absolute configurations of chiral carbons of the six-membered lactone ring in 1–3 were established by density functional theory calculation of their ¹³C NMR chemical shifts. In addition, all the compounds were tested for cytotoxic, antibacterial, anti-biofilm, and AchE inhibitory activities.     

Synthesis of Ethyl 8‐Aryl‐8‐hydroxy‐3‐oxo‐8H[1,2,4]oxadiazolo‐[3,4‐c][1,4]thiazine‐5‐carboxylates by Ring‐Expansion Rearrangement

The title compounds were prepared by the ring–ring interconversion of ethyl 5‐nitroso‐6‐arylimidazo[2,1‐b]thiazole‐3‐carboxylates with hydrochloric acid. The effect of electron‐withdrawing substituent in the thiazole ring on the general applicability of the ring–ring interconversion has been also evaluated.     

The preparation of 3,6‐bis(3‐hexylthien‐2‐yl)‐s‐tetrazine and its conjugated polymers

We demonstrated, for the first time, that 3,6‐bis(3‐hexylthien‐2‐yl)‐s‐tetrazine (TTz) with hexyl group at the 3‐position of thiophene rings can be prepared using a modified sulfur‐assisted Pinner synthesis. Although the hexyl group creates large steric hindrance to the tetrazine ring formation reaction, and the reaction under a traditional condition only produces trace amount of the target product, the yield of this reaction under a modified reaction condition using anhydrous hydrazine at 68 °C can reach 65%. Two new copolymers of the resulting TTz and hexyl‐ or 2‐ethylhexyl‐substituted cyclepentadithiophene have been prepared. The polymers show a broader light absorption in film than in solution attributing to the large distribution of effective conjugation length of polymer chain due to the existence of both cis‐ and trans‐orientations of the 3‐hexylthiophene units in the planar polymer chain in solid state. Although the polymers show a narrow band gap and a deep HOMO level, which are desirable for generating an efficient light absorption and a larger open circuit voltage (V_oc) of the resulting solar cell devices, the device performance is not as good as expected. It is attributed to the random distribution of the cis‐ and trans‐conformations along the polymer chain. © 2011 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2011.     

Total Synthesis of (−)‐Spiroleucettadine

One of a number of intriguing new alkaloids isolated from the Leucetta sp. sponge in 2004, spiroleucettadine displayed unique structural features on a restricted scaffold: a trans ‐fused 5,5‐bicyclic ring system together with an amino hemiketal moiety. Attempts to synthesize the initially proposed structure failed, raising questions as to its veracity, and structure revision ensued in 2008; no successful synthetic approach has been reported to date. Herein, we describe the enantiospecific total synthesis of (−)‐spiroleucettadine by a highly efficient biomimetic approach starting from l ‐tyrosine. One of two key hypervalent‐iodine‐mediated oxidation reactions forged the spirocyclic center, and the other enabled the installation of the methylamine side chain in the penultimate step. Our approach provides synthetic access to a new class of spiroannulated natural products and will enable future studies of the structure–biological‐activity relationships of these antibacterial compounds.