Synthesis and in vitro evaluation of taxol oxetane ring D precursors

A series of potential taxoid substrates was prepared in radiolabeled form to probe in vitro for the oxirane formation step and subsequent ring expansion step to the oxetane (ring D) presumably involved in the biosynthesis of the anticancer agent Taxol. None of the taxoid test substrates underwent transformation in cell-free systems from Taxus suggesting that these surrogates bore substitution patterns inappropriate for recognition or catalysis by the target enzymes, or that taxoid oxiranes and oxetanes arise by independent biosynthetic pathways.     

Association of Radical Chemistry with LanD Flavoprotein Activity for C-Terminal Macrocyclization of a Ribosomal Peptide by Formation of an Unsaturated Thioether Residue

LanD flavoproteins catalyze oxidative decarboxylation of the C-terminal Cys residue of a peptide to produce an enethiol. This enethiol is highly reactive and can be coupled with an upstream dehydroamino acid through Michael addition to form S-[2-aminovinyl](3-methyl)cysteine, an unsaturated thioether residue known to be characteristic of an array of C-terminally macrocyclized, ribosomally synthesized and posttranslationally modified peptides (RiPPs). Based on a two-stage bioinformatics mining of posttranslational modifications (PTMs) related to C-terminal Cys processing, we report herein that LanD activity can couple with radical S-adenosylmethionine chemistry to provide a new unsaturated thioether residue, S-[2-aminovinyl]-3-carbamoylcysteine, by conjugating the resultant enethiol with Cβ of the Asn residue in the C-terminal NxxC motif of a peptide for macrocyclization. This study furthers our understanding of the variety of PTMs involved in creating the structure diversity of macrocyclic RiPPs.     

A domino three-component condensation of ortho-haloacetophenones with urea or amines: a novel one-pot synthesis of halogen-substituted quinolines

Halogen-substituted quinolines have been synthesized in good yields by the condensation and cyclization of two molecules of ortho-haloacetophenones with urea or primary amines. The formation of halogen-substituted quinolines takes place through the unexpected catalyst-free cleavage of C(sp²)-X (X=Cl, Br), α-C(sp³)-H bonds and formation of C-C, C-N bonds in a selective manner. The attractive features of the present synthetic method for halogen-substituted quinolines include catalyst-free, one-pot process, easy availability of starting materials, and introduction of halogen on the quinoline ring for further transformation.     

Lewis acid induced [4+3] cycloadditions of 2-silyloxyacroleins. Insights on the mechanism from a DFT analysis

The mechanism for the Lewis acid induced [4+3] cycloadditions of 2-(trimethylsilyloxy)acrolein with furan has been examined here through DFT calculations at B3LYP/6-31G* level. The mechanism is a three-step process initialized by the nucleophilic attack of furan to the β-conjugated position of acrolein yielding a zwitterionic intermediate. The key step on the formation of the seven-membered ring is the electrophilic attack of the furan residue to the carbonyl carbon in this intermediate. The endo selectivity experimentally observed is reproduced by the calculations.     

The thermodynamic studies of the molecular interactions of methyltin(IV) tribromide with free base meso-tetraarylporphyrins

The thermodynamic parameters for the interactions of MeSnBr₃ with para- and meta-substituted meso-tetraphenylporphyrins (H₂T(4-X)PP; X=OCH₃, CH₃, H, Cl, NO₂ and H₂T(3-X)PP; X=CH₃, Cl) have been studied. The formation constants have been elucidated by using spectrophotometric titration and computer squad program data refinement. The adducts of composition 2:1 and 1:1 of MeSnBr₃ to H₂T(4-X)PP with stability constants K₁ and K₂ coexist in solution, but meta-substituted porphyrins form adducts of the composition 1:1 of MeSnBr₃ to H₂T(3-X)PP with stability constant K₁. Formation constants decrease with decreasing electron donation of para-substituted porphyrins as follow: H₂T(4-CH₃O)PP>H₂T(4-CH₃)PP>H₂TPP>H₂T(4-Cl)PP>H₂T(4-NO₂)PP. Despite the electron donation of the methyl group, H₂T(3-Cl)PP forms more stable adducts than H₂T(3-CH₃)PP with MeSnBr₃.     

(Cyclophan-Metall)-Komplexe: Synthese und Kristallstruktur von ([3.3]Paracyclophan)gallium(I)-tetrabromgallat(III)

Cyclophane-Metal Complexes: Synthesis and Crystal Structure of ([3.3]Paracyclophane)gallium(I) Tetrabromogallate(III) [3.3]Paracyclophane forms 1:1 complexes 2a and 2b with both Ga[GaCl₄] and Ga[GaBr₄]. The crystalline products obtained from toluene solution at room temperature are much less sensitive to air and moisture than most other arene complexes of Ga(I). Solubilities in standard organic solvents are very low, suggesting coordination polymers. The X-ray diffraction analysis of 2b confirms the presence of a two-dimensional network. Both aromatic rings of each cyclophane molecule are η⁶-coordinated from the outer side to Ga(I)-atoms. The position of these metal cations is 2.75 Å above the ring centres. The arene rings are parallel within each cyclophane, but tilted by 48.5° with respect to those of the neighbouring cyclophane. The coordination sphere of the Ga(I) centres is completed by two Br-atoms of two GaBr anions, which link the Ga(I) cations to give … Ga[GaBr₄] Ga[GaBr₄]Ga … strands. The double interconnection of the Ga(I)-atoms gives rise to a two-dimensional sheet structure, which is thus different from the structure of the previously described Ga[GaBr₄] complex of [2.2]paracyclophane, where a three-dimensional network was observed.     

Cyclophanes—13: Crystal and molecular structure of [2.2][2,5]furano(1,4)naphthalenophane

The crystal and molecular structure of [2.2](2,5)furano(1,4)naphthalenophane (1) was determined by X-ray crystallography. The molecule exists in the anti-conformation and the study represents the first instance in which the structural features of a naphthalenoid ring within a cyclophane were determined. Crystals of cyclophane 1 are orthorhombic, space group Pbca, with a = 7.859(2). b = 11.482(3) and c = 28.818(8) Å. While the nonbridged portion of the naphthalenoid ring is planar, the portion which is bridged to the furanoid ring through its 1 and 4 C atoms is puckered and boat-shaped. These C atoms are positioned 14° out of the plane of the other four C atoms of this ring. The furanoid ring is essentially planar but is not parallel to the naphthalenoid ring. It is inclined 22° to the least squares plane of the bridged portion of the naphthalenoid ring. This angle of inclination staggers the atoms of the furanoid and bridged naphthalenoid ring and positions the 3 and 4 C atoms, the 2 and 5 C atoms and the 0 atom of the furanoid ring 3.4. 2.9 and 2.6 Å. respectively, from the least squares plane of the bridged portion of the naphthalenoid ring. While the internal angles around the bridging C atoms α- to the naphthalenoid ring are 109°, those α- to the furanoid ring are 113°. In addition unusually large bond angles ($\text{\$}\text{?}$137°) at the 2 and 5 C atoms of the furanoid ring, external to the ring, are also observed. The distortions are considered with respect to the strain within the cyclophane macrocycle and are compared with other similar systems.     

Synthesis and charge transfer interactions of cyclobis(4,4′-azopyridinium-p-phenylene)

A new tetracationic cyclophane, cyclobis(4,4′-azopyridinium-p-phenylene) (2.4PF₆), was synthesized via template-directed synthesis and characterized by MS and NMR spectroscopy. For the preparation of π-electron-deficient 2.4PF₆, the use of π-electron-rich templates such as 1,4-bis[2-(2-hydroxyethoxy)ethoxy]-benzene (4) and 1,5-bis[2-(2-hydroxyethoxy)ethoxy]naphthalene (5) enhanced the cyclophane formation in 17 and 19% yields, respectively. ¹H NMR spectra of the reaction mixture revealed that the cyclophane precursor 1.2PF₆ formed supramolecular assembling complexes with hydroquinone derivatives 4 and 5 before the ring formation. The intermolecular charge transfer interaction and the stability constants (K_a) of complexes generated between the electron-acceptor 2.4PF₆ and electron-donors 1,4-dimethoxybenzene 3, 4, and 5 were evaluated using UV-vis. spectroscopy and spectroscopic titration. The absorption bands attributable to CT interactions were centred at 580 nm for 3, 635 nm for 4, and 646 nm for 5, with stability constants of 17 ± 2, 2100 ± 200, and 2400 ± 300, respectively.     

Identification of the peptide epimerase MslH responsible for d-amino acid introduction at the C-terminus of ribosomal peptides

A lasso peptide MS-271 is a ribosomally synthesized and post-translationally modified peptide (RiPP) consisting of 21 amino acids with a d-tryptophan (Trp) at its C terminus. The presence of d-amino acids is rare in RiPPs and few mechanisms of d-amino acid introduction have been characterized. Here, we report the identification of MslH, previously annotated as a hypothetical protein, as a novel epimerase involved in the post-translational epimerization of the C-terminal Trp residue of the precursor peptide MslA. MslH is the first epimerase that catalyzes epimerization at the C_α center adjacent to a carboxylic acid in a cofactor-independent manner. We also demonstrate that MslH exhibits broad substrate specificity toward the N-terminal region of the core peptide, showing that MslH-type epimerases offer opportunities in peptide bioengineering.

The biosynthesis of d-tryptophan containing lasso peptide MS-271 involves the epimerization of a ribosomal peptide MslA catalyzed by a novel class of metal- and cofactor-independent peptide epimerase MslH.     

Preparation,Structural Properties and Thermal Isomerization of Hex‐3‐ene‐1,5‐diyne Bridged [2.2]Paracyclophanes

The [2.2]paracyclophane moiety is used as a spacer to connect the ends of a hex‐3‐ene‐1,5‐diyne unit, a π‐system that on thermolysis usually cycloaromatizes to a benzene ring (Bergman cyclization). For the preparation of the pseudo‐geminally‐bridged system 9 , the diacetylene 3 was chain‐extended to the diol 16 , which after conversion to the pseudo‐geminal dibromide 17 was ring‐closed by treatment with LiHMDS/HMPA to the [2.2]paracyclophane enediyne 9 . Whereas the McMurry coupling of the pseudo‐ortho bisaldehyde 24 resulted in the formation of the hexadienyne‐bridged cyclophane 27 , the pseudo‐ortho‐bridged hydrocarbon 11 was obtained by preparing first the diol 28 from 24 , converting the latter into the dioxolane 29 , which in the last step furnished the olefin 11 by treatment with Tf₂O/EtN(iPr)₂. The authentic Bergman product 10 of the pseudo‐gem‐bridged hexenediyne 9 was synthesized by a conventional sequence starting from the ethynyl formyl substrate 18 . Since the pseudo‐ortho‐enediyne‐bridged hydrocarbon 11 is thermally labile, its benzannelated derivate 34 was prepared. No classical Bergman cyclization reactions could be observed for any of the [2.2]paracyclophane‐bridged hexenediynes prepared here. In the pseudo‐gem‐series the fulvenes 14 and 15 were the only products that could be identified under thermal conditions (McMurry coupling); the benzannelated substrate 34 gave the benzofulvene‐bridged cyclophane 36 on photolysis. Bergman cyclizations yielding fulvene derivatives are extremely rare. The mechanism of the cyclization of 9 and 34 is discussed, using compliance constants. The structure assignments of the hydrocarbons synthesized in this study are based on spectroscopic studies as well as X‐ray structural analyses for 9 , 10 , 11 , 27 , and 34 .     

Genome-Guided Discovery of the First Myxobacterial Biarylitide Myxarylin Reveals Distinct C–N Biaryl Crosslinking in RiPP Biosynthesis

Ribosomally synthesized and post-translationally modified peptides (RiPPs) are a structurally diverse group of natural products. They feature a wide range of intriguing post-translational modifications, as exemplified by the biarylitides. These are a family of cyclic tripeptides found in Planomonospora, carrying a biaryl linkage between two aromatic amino acids. Recent genomic analyses revealed that the minimal biosynthetic prerequisite of biarylitide biosynthesis consists of only one ribosomally synthesized pentapeptide precursor as the substrate and a modifying cytochrome-P450-dependent enzyme. In silico analyses revealed that minimal biarylitide RiPP clusters are widespread among natural product producers across phylogenetic borders, including myxobacteria. We report here the genome-guided discovery of the first myxobacterial biarylitide MeYLH, termed Myxarylin, from Pyxidicoccus fallax An d48. Myxarylin was found to be an N-methylated tripeptide that surprisingly exhibits a C–N biaryl crosslink. In contrast to Myxarylin, previously isolated biarylitides are N-acetylated tripeptides that feature a C–C biaryl crosslink. Furthermore, the formation of Myxarylin was confirmed by the heterologous expression of the identified biosynthetic genes in Myxococcus xanthus DK1622. These findings expand the structural and biosynthetic scope of biarylitide-type RiPPs and emphasize the distinct biochemistry found in the myxobacterial realm.     

Tandem pseudopericyclic reactions: [1,5]-X sigmatropic shift/6pi-electrocyclic ring closure converting N-(2-X-carbonyl)phenyl ketenimines into 2-X-quinolin-4(3H)-ones

N-(2-X-Carbonyl)phenyl ketenimines undergo, under mild thermal conditions, [1,5]-migration of the X group from the carbonyl carbon to the electron-deficient central carbon atom of the ketenimine fragment, followed by a 6pi-electrocyclic ring closure of the resulting ketene to provide 2-X-substituted quinolin-4(3H)-ones in a sequential one-pot manner. The X groups tested are electron-donor groups, such as alkylthio, arylthio, arylseleno, aryloxy, and amino. When involving alkylthio, arylthio, and arylseleno groups, the complete transformation takes place in refluxing toluene, whereas for aryloxy and amino groups the starting ketenimines must be heated at 230 degrees C in a sealed tube in the absence of solvent. The mechanism for the conversion of these ketenimines into quinolin-4(3H)-ones has been studied by ab initio and DFT calculations, using as model compounds N-(2-X-carbonyl)vinyl ketenimines bearing different X groups (X = F, Cl, OH, SH, NH(2), and PH(2)) converting into 4(3H)-pyridones. This computational study afforded two general reaction pathways for the first step of the sequence, the [1,5]-X shift, depending on the nature of X. When X is F, Cl, OH, or SH, the migration occurs in a concerted mode, whereas when X is NH(2) or PH(2), it involves a two-step sequence. The order of migratory aptitudes of the X substituents at the acyl group is predicted to be PH(2) > Cl > SH > NH(2) > F> OH. The second step of the full transformation, the 6pi-electrocyclic ring closure, is calculated to be concerted and with low energy barriers in all the cases. We have included in the calculations an alternative mode of cyclization of the N-(2-X-carbonyl)vinyl ketenimines, the 6pi-electrocyclic ring closure leading to 1,3-oxazines that involves its 1-oxo-5-aza-1,3,5-hexatrienic system. Additionally, the pseudopericyclic topology of the transition states for some of the [1,5]-X migrations (X = F, Cl, OH, SH), for the 6pi-electrocyclization of the ketene intermediates to the 4(3H)-pyridones, and for the 6pi-electrocyclization of the starting ketenimines into 1,3-oxazines could be established on the basis of their geometries, natural bond orbital analyses, and magnetic properties. The calculations predict that the 4(3H)-pyridones are the thermodynamically controlled products and that the 1,3-oxazines should be the kinetically controlled ones.     

Kinetic control in the formation of meso-dithia[3.3]-paracyclophane S,S′-dioxide

meso-(R,S)-Dithia[3.3]-paracyclophane S,S′-dioxide is formed with complete stereoselection by the thermolysis of 3,3′-[1,4-phenylene-bis(methylenesulfinyl)]-dipropanoate—that generates in situ two transient sulfenic acid functions—in the presence of p-diethynylbenzene. By employing an improved procedure that we have recently optimized, the title compound has been prepared in a 70% yield as a single diastereoisomer. A density functional B3LYP/6-311+G(d,p) study demonstrates that the final syn-addition cyclization step takes place under kinetic control, through a five-membered transition state that defines the stereochemistry of the resulting cyclophane.     

Photochemical formation of [4.4.4](1,3,5)cyclophanes from 1,3,5-tris(3-phenylpropenoyl)benzenes

Irradiation of 1,3,5-tris(3-phenylpropenoyl)benzene (1a) yields in solution a dimer 2a by a threefold head-to-head/anti [2π+2π]cycloaddition. The stereochemistry of this [4.4.4](1,3,5)cyclophane was determined by ¹H and ¹³C NMR studies including NOE measurements and a calculation of the AA′MM′ spin pattern of the methine protons. In contrast to the solution photochemistry, which is presumably controlled by the arrangement of an excimer, the irradiation in the crystalline state leads by a topochemical control to a dimer 3a, which contains a single four-membered ring.     

Photocycloaddition of chalcones to yield cyclobutyl ditopic cyclophanes

The intramolecular photocycloaddition of chalcones to give cyclobutanes has proved to be a fast and convenient method to shrink a cyclophane ring to a tricyclic system, in order to prepare potential ditopic receptors. X-Ray results confirm the previously indicated structure for the cyclobutanes 2a (n=1, m=1), in which the cyclization occurs by a head-to-head syn ring closure. NMR results indicate that the same process occurs for the cyclobutanes 2b (n=2, m=2) and 2c (n=1, m=3).     

Reduction of the 1,2,5-thiadiazole ring of 3,6:12,15-di-1,4-benzo[6.6](3,4)-1,2,5-thiadiazolo- and 3,5:11,13-di-1,3-benzo-[6.6](3,4)-1,2,5-thiadiazolocyclophanes. Selective preparation of cis- and trans-[23]cyclophane-1,2-diacetoamide

The effect of the [2.2.2]cyclophane ring structure on the reduction of 1,2,5-thiadiazole ring incorporated in cyclophanes 1a-c and 2a-c was investigated. When reduced by sodium metal in ethanol followed by acetylation, para[2³]cyclophane 1 gave a mixture of the expected cis- and trans-diamides, 3 and 4 , in which 4 was the major product. On the other hand, reduction of 1 with lithium aluminum hydride proceeded in a cis-selective manner and gave 3 as a major product after a treatment of the reduced products with acetic anhydride. The reduction of metacyclophane 2 , which is less strained than 1 , proceeded exclusively in cis-fashion and a subsequent treatment of the reduction product with acetic anhydride gave only cis-diamide 6 .     

Fluorescent 2-(2′-hydroxybenzofuran)benzoxazole (HBBO) borate complexes: synthesis,optical properties,and theoretical calculations

The multi-step synthesis, structural and optical properties of original luminescent borate complexes derived from 2-(2′-hydroxybenzofuran)benzoxazole (HBBO) are reported. Functionalization at position 3 of the benzofuran ring was readily achieved through an electrophilic cyclization key step followed by a Sonogashira cross-coupling reaction. The optical properties of the resulting boron difluoride dyes highlight different photophysical behaviors depending on the nature of the substitution at position 3 of the benzofuran core (^tBu-phenylacetylene or NⁿBu₂-phenylacetylene). The NⁿBu₂-phenylacetylene moiety favors a sizeable intramolecular charge transfer as evidenced by a strong solvatochromism; a feature further confirmed by ab initio calculations.     

Tricarbonylchromium complexes of [5]- and [6]metacyclophane: an experimental and theoretical study

Tricarbonylchromium complexes of [5]- and [6]metacyclophane were prepared and the interaction between the Cr(CO)₃ tripod and the cyclophane fragment was evaluated by both an experimental and a theoretical study. The tricarbonylchromium complex of [5]metacyclophane could only be obtained in solution and was characterized by its ¹H NMR spectrum. The tricarbonylchromium complex of [6]metacyclophane was isolated and an X-ray crystal structure was obtained, which reveals that no significant geometric changes occur upon coordination of the severely distorted aromatic ring. Computations on the tricarbonylchromium complexes of m-xylene, [5]- and [6]metacyclophane furthermore demonstrate that the corresponding complexation energy is remarkably unaffected by the degree of distortion of the aromatic ring. Theoretical analyses of the above model systems as well as complexes of planar and artificially deformed benzene with Cr(CO)₃ show that this is primarily the result of two counteracting effects: (i) a stabilization due to an increased back-donation from the metal center to the benzene and (ii) a destabilization due to the increasing strain in the aromatic ring.     

Hyperbranched polymers with aggregation-induced emission property for solution-processed white organic light-emitting diodes

In this work, a new series of hyperbranched polymers of PFTPE-Ir(piq)₃-X(X?=?1, 5, 10) were designed and synthesized, in which tris(1-phenylisoquinoline)iridium(Ш) (Ir(piq)₃) acts as red emission core and PFTPE acts as branches. The photophysical study reveals that these hyperbranched polymers exhibit aggregation-induced emission (AIE) characteristic, inducing in much higher photoluminescent quantum yield (Φ_Y) in neat film than that in dilute tetrahydrofuran (THF) solution. The white-light OLEDs using PFTPE-Ir(piq)₃-X as emission layer show rather weaker efficiency roll-off. Especially, the white-light OLED based on PFTPE-Ir(piq)₃-5 as emission layer shows a maximum luminance of 4686?cd/m², a maximum luminous efficiency of 2.43?cd/A, a maximum external quantum efficiency of 1.08% and the Commission Internationale de l’Eclairage coordinate of (0.26, 0.36).     

A Macrocycle Based on a Heptagon-Containing Hexa-peri-hexabenzocoronene

A cyclophane is reported incorporating two units of a heptagon-containing extended polycyclic aromatic hydrocarbon (PAH) analogue of the hexa-peri-hexabenzocoronene (HBC) moiety (hept-HBC). This cyclophane represents a new class of macrocyclic structures that incorporate for the first time seven-membered rings within extended PAH frameworks. The saddle curvature of the hept-HBC macrocycle units induced by the presence of the nonhexagonal ring along with the flexible alkyl linkers generate a cavity with shape complementarity and appropriate size to enable π interactions with fullerenes. Therefore, the cyclophane forms host–guest complexes with C₆₀ and C₇₀ with estimated binding constants of K_a=420±2 m ⁻¹ and K_a=(6.49±0.23)×10³ m ⁻¹, respectively. As a result, the macrocycle can selectively bind C₇₀ in the presence of an excess of a mixture of C₆₀ and C₇₀.