2‐Amino‐5‐nitro‐4,6‐dipiperidinopyrimidinium hydrogen­sulfate monohydrate: hydrogen‐bonded sheets containing highly distorted cations

In the title compound, C₁₄H₂₃N₆O₂⁺·HSO₄⁻·H₂O, the pyrimidinium ring of the cation adopts a twist‐boat conformation, induced by steric clashes between adjacent ring substituents; the anions and the water mol­ecules are linked by three O—H⃛O hydrogen bonds [H⃛O = 1.70–1.78 Å, O⃛O = 2.548 (2)–2.761 (2) Å and O—H⃛O = 161–168°] into chains of edge‐fused R(12) rings, which are linked into sheets by the cations, via three N—H⃛O hydrogen bonds [H⃛O = 1.96–2.17 Å, N⃛O = 2.820 (2)–2.935 (2) Å and N—H⃛O = 145–173°].     

6‐Amino‐3‐methyl‐5‐nitro­so­pyrimi­dine‐2,4(1H,3H)‐dione forms a three‐dimensional hydrogen‐bonded framework structure

Molecules of the title compound, C₅H₆N₄O₃, are linked into a single three‐dimensional framework by a two‐centre N—H⃛O hydrogen bond [H⃛O = 1.92 Å, N⃛O = 2.785 (2) Å and N—H⃛O = 168°], a two‐centre N—H⃛H hydrogen bond [H⃛N = 2.19 Å, N⃛N = 3.017 (2) Å and N—H⃛N = 157°] and the intermolecular component of an effectively planar three‐centre N—H⃛(O)₂ hydrogen bond [H⃛O = 2.03 and 2.31 Å, N⃛O = 2.645 (2) and 2.957 (2) Å, N—H⃛O = 126 and 130°, and O⃛H⃛O = 101°].     

(R)‐1‐Phenyl­ethyl­ammonium 6‐amino‐5‐nitro­pyrimidine‐2,4(1H,3H)‐dionate (R)‐1‐phenyl­ethyl­amine hemisolvate: hydrogen‐bonded sheets of ions with pendent solvent mol­ecules

In the title compound, 2C₈H₁₂N⁺·2C₄H₃N₄O₄⁻·C₈H₁₁N, the anions are linked by paired N—H⋯N hydrogen bonds [H⋯N = 2.07 and 2.11 Å, N⋯N = 2.942 (3) and 2.978 (3) Å and N—H⋯N = 173 and 170°] and by paired N—H⋯O hydrogen bonds [H⋯O = 1.98 and 2.05 Å, N⋯O = 2.855 (3) and 2.917 (3) Å, and N—H⋯O = 173 and 167°] into chains of rings. These chains are linked into sheets by further N—H⋯O hydrogen bonds in which all of the donors are provided by the cations [H⋯O = 1.83–2.17 Å, N⋯O = 2.747 (3)–2.965 (3) Å and N—H⋯O = 141–168°]. The neutral amine molecule is pendent from the sheet and is linked to it by a single N—H⋯N hydrogen bond [H⋯N = 2.00 Å, N⋯N = 2.901 (3) Å and N—H⋯N = 175°].     

meso‐5,5,7,12,12,14‐Hexa­methyl‐4,11‐di­aza‐1,8‐diazo­nia­cyclo­tetra­decane (S)‐malate(2–) methanol disolvate: a chain of rings generated by two pairs of N—H⃛O hydrogen bonds

The title compound is a methanol‐solvated salt, C₁₆H₃₈N₄²⁺·C₄H₄O₅²⁻·2CH₃OH, in which the ionic components are linked into chains by two pairs of N—H⃛O hydrogen bonds [H⃛O = 1.78–2.21 Å, N⃛O = 2.702 (14)–3.094 (8) Å and N—H⃛O = 160–179°]. The methanol mol­ecules are pendent from the chain and are linked to it by O—H⃛O hydrogen bonds [H⃛O = 1.86 and 1.89 Å, O⃛O = 2.691 (9) and 2.708 (16) Å, and O—H⃛O = 168 and 165°].     

meso‐5,5,7,12,12,14‐Hexamethyl‐1,4‐diaza‐8,11‐diazoniacyclotetradecane bis(2‐naphthoate) ethanol disolvate: centrosymmetric five‐component aggregates linked into sheets by C—H⃛π(arene) hydrogen bonding

The title compound is an ethanol‐solvated salt, C₁₆H₃₈N₄²⁺·2C₁₁H₇O₂⁻·2C₂H₆O, in which the cation lies across a centre of inversion in P2₁/c. The ions are linked by N—H⃛O hydrogen bonds [H⃛O = 1.70 and 2.30 Å, N⃛O = 2.624 (2) and 3.136 (2) Å, and N—H⃛O = 178 and 151°], and the ethanol mol­ecule is linked to the anion by an O—H⃛O hydrogen bond [H⃛O = 1.90 Å, O⃛O = 2.728 (2) Å and O—H⃛O = 171°], to form a centrosymmetric five‐component aggregate. C—H⃛O hydrogen bonds and aromatic π–π‐stacking interactions are absent, but the aggregates are linked into sheets by a single C—H⃛π(arene) hydrogen bond.     

4‐Amino‐2,6‐di­methoxy­pyrimidine: hydrogen‐bonded sheets of R22(8) and R66(28) rings,reinforced by an aromatic π–π‐stacking interaction

Molecules of the title compound, C₆H₉N₃O₂, are linked by an N—H⃛O hydrogen bond [H⃛O = 2.29 Å, N⃛O = 3.169 (2) Å and N—H⃛O = 173°] and an N—H⃛N hydrogen bond [H⃛N = 2.12 Å, N⃛N = 2.999 (2) Å and N—H⃛N = 175°] into sheets containing centrosymmetric R(8) and R(28) rings; the sheets are reinforced by a single aromatic π–π‐stacking interaction.     

6‐Amino‐2‐(3,4‐di­methoxy­benzyl­amino)‐3‐methyl‐5‐nitro­so­pyrimidin‐4(3H)‐one: hydrogen‐bonded sheets form interdigitated bilayers

Molecules of the title compound, C₁₄H₁₇N₅O₄, exhibit a highly polarized molecular–electronic structure. The mol­ecules are linked into sheets by two N—H⋯O hydrogen bonds [H⋯O = 2.03 and 2.02 Å, N⋯O = 2.836 (2) and 2.887 (2) Å, and N—H⋯O = 153 and 168°], augmented by a single C—H⋯O hydrogen bond [H⋯O = 2.47 Å, C⋯O = 3.403 (2) Å and C—H⋯O = 166°]. Pairs of sheets, related by inversion, form bilayers with interdigitated di­methoxy­benzyl substituents, weakly linked by a further C—H⋯O interaction [H⋯O = 2.50 Å, C⋯O = 3.350 (2) Å and C—H⋯O = 146°].     

6,6′‐Di­methoxy‐2,2′‐[(1R,2R)‐cyclo­hexane‐1,2‐diyl­bis­(nitrilo­methyl­idyne)]­diphenol: three C—H⃛O hydrogen bonds generate a three‐dimensional framework

Molecules of the title compound, alternatively called (R,R)‐N,N′‐bis(3‐methoxysalicylidene)‐trans‐cyclohexane‐1,2‐diamine, C₂₂H₂₆N₂O₄, contain two intramolecular O—H⃛N hydrogen bonds and adopt a conformation with approximate twofold rotational symmetry. The mol­ecules are linked by three C—H⃛O hydrogen bonds [H⃛O = 2.45–2.55 Å, C⃛O = 3.329 (2)–3.398 (2) Å and C—H⃛O = 142–172°] into a continuous framework.     

4,4′‐Tri­methyl­enedipyridinium bis­[carboxy­methyl­phos­pho­nate(1–)]: a three‐dimensional framework structure built from O—H⃛O,N—H⃛O and C—H⃛O hydrogen bonds

In the title compound, C₁₃H₁₆N₂²⁺·2C₂H₄O₅P⁻, the cation lies across a twofold rotation axis in space group Fdd2. The anions are linked into molecular ladders by two O—H⃛O hydrogen bonds [H⃛O = 1.73 and 1.77 Å, O⃛O = 2.538 (2) and 2.598 (3) Å, and O—H⃛O = 160 and 170°], these ladders are linked into sheets by a single type of N—H⃛O hydrogen bond [H⃛O = 1.75 Å, N⃛O = 2.624 (3) Å and N—H⃛O = 171°] and the sheets are linked into a three‐dimensional framework by a single type of C—H⃛O hydrogen bond [H⃛O = 2.48 Å, C⃛O = 3.419 (4) Å and C—H⃛O = 167°].     

2‐Amino­benzimidazolium O‐ethyl malonate: eight independent N—H⋯O hydrogen bonds generate sheets

The title compound, C₇H₈N₃⁺·C₅H₇O₄⁻, crystallizes with Z′ = 2 in space group P2₁/c; eight independent N—H⋯O hydrogen bonds [H⋯O = 1.75–1.88 Å, N⋯O = 2.699 (2)–2.829 (2) Å and N—H⋯O = 147–179°] link the four inde­pendent ions into sheets.     

7‐Carboxyl­ato‐8‐hydroxy‐2‐methyl­quinolinium monohydrate and 7‐carboxy‐8‐hydroxy‐2‐methyl­quinolinium chloride monohydrate at 100 K

Both 7‐carboxyl­ato‐8‐hydroxy‐2‐methyl­quinolinium monohydrate, C₁₁H₉NO₃·H₂O, (I), and 7‐carboxy‐8‐hydroxy‐2‐methyl­quinolinium chloride monohydrate, C₁₁H₁₀NO₃⁺·Cl⁻·H₂O, (II), crystallize in the centrosymmetric P space group. Both compounds display an intramolecular O—H⋯O hydrogen bond involving the hydroxy group; this hydrogen bond is stronger in (I) due to its zwitterionic character [O⋯O = 2.4449 (11) Å in (I) and 2.5881 (12) Å in (II)]. In both crystal structures, the HN⁺ group participates in the stabilization of the structure via intermolecular hydrogen bonds with water mol­ecules [N⋯O = 2.7450 (12) Å in (I) and 2.8025 (14) Å in (II)]. In compound (II), a hydrogen‐bond network connects the Cl⁻ anion to the carboxylic acid group [Cl⋯O = 2.9641 (11) Å] and to two water mol­ecules [Cl⋯O = 3.1485 (10) and 3.2744 (10) Å].     

4‐Iodo‐N‐(2‐nitro­phenyl­sulfanyl)­aniline: π‐stacked sheets generated by a combination of N—H⃛O and C—H⃛O hydrogen bonds

Molecules of the title compound, C₁₂H₉IN₂O₂S, are linked by one N—H⃛O hydrogen bond [H⃛O = 2.16 Å, N⃛O = 2.935 (4) Å and N—H⃛O 147°] and two C—H⃛O hydrogen bonds [H⃛O both 2.49 Å, C⃛O = 3.231 (5) and 3.220 (5) Å, and C—H⃛O = 135 and 134°] into sheets which themselves are weakly linked by an aromatic π–π‐stacking interaction between iodinated rings in centrosymmetrically related mole­cules. There are no iodo–nitro interactions.     

Hydro­gen‐bond networks in tris(4‐hydroxy­phenyl)­methane and its 1:1 molecular complex with 4,4′‐bi­pyridine

In tris(4‐hydroxy­phenyl)­methane (or 4,4′,4′′‐methane­triyl­tri­phenol), C₁₉H₁₆O₃, mol­ecules are connected by O—H⃛O hydrogen bonds [O⃛O = 2.662 (2) and 2.648 (2) Å] into two‐dimensional square networks that are twofold interpenetrated. In tris(4‐hydroxy­phenyl)­methane–4,4′‐bi­pyridine (1/1), C₁₉H₁₆O₃·C₁₀H₈N₂, trisphenol mol­ecules form rectangular networks via O—H⃛O [O⃛O = 2.694 (3) Å] and C—H⃛O [C⃛O = 3.384 (3) Å] hydrogen bonds. Bi­pyridine mol­ecules hydrogen bonded to phenol moieties [O⃛N = 2.622 (3) and 2.764 (3) Å] fill the voids to complete the structure.     

N‐(6‐Amino‐3,4‐di­hydro‐3‐methyl‐5‐nitro­so‐4‐oxopyrimidin‐2‐yl)‐(S)‐glutamic acid: a three‐dimensional framework structure built from O—H⃛O,N—H⃛O and O—H⃛N hydrogen bonds

The title compound, C₁₀H₁₃N₅O₆, exhibits a highly polarized molecular–electronic structure and the conformation is influenced by two intramolecular N—H⃛O hydrogen bonds. The mol­ecules are linked into a single framework by hydrogen bonds of types O—H⃛O [O—H = 1.22, H⃛O = 1.38, O⃛O = 2.558 (6) Å and O—H⃛O = 160°], N—H⃛O [H⃛O = 2.26, N⃛O = 2.866 (6) Å and N—H⃛O = 126°] and O—H⃛N [O—H = 1.26, H⃛N = 1.56, O⃛N = 2.811 (6) Å and O—H⃛N = 170°]. The substructure generated by the O—H⃛O and N—H⃛O hydrogen bonds takes the form of a double helix.     

Two bis­(ammonium) 1,5‐naphthalene­disulfonate salts

The title compounds, bis­(ammonium) naphthalene‐1,5‐di­sul­fon­ate, 2NH₄⁺·C₁₀H₆O₆S₂²⁻, and bis­[1‐(hydroxy­methyl)‐3,5,7‐tri­aza‐1‐azoniatri­cyclo­[3.3.1.1^3,7]­decane] 1,5‐naphthalene­di­sul­fon­ate, 2C₇H₁₅N₄O⁺·C₁₀H₆O₆S₂²⁻, were prepared from the acid‐promoted reaction of hexa­methyl­enetetr­amine. In both structures, the di­sulfonate anion is positioned on an inversion center, with each sulfonate group contributing to the supramolecular assemblies via hydrogen bonds. The ammonium cations are linked to sulfonate groups by four distinct N⁺—H⃛⁻O—S contacts [N⃛O = 2.846 (2)–2.898 (2) Å and N—H⃛O = 160 (2)–175 (2)°], whereas the 1‐(hydroxy­methyl)‐3,5,7‐tri­aza‐1‐azoniatri­cyclo­[3.3.1.1^3,7]­decane cations form one O—H⃛⁻O—S [O⃛O = 2.628 (2) Å and O—H⃛O = 176°] and three C—H⃛⁻O—S [C⃛O = 3.359 (2)–3.380 (2) Å and C—H⃛O = 148–155°] interactions to neighboring sulfonate groups.     

2‐(Hydro­xy­methyl)­pyridinium di­hydrogenphosphate

The title compound, C₆H₈NO⁺·H₂PO₄⁻, consists of 2‐(hy­droxy­methyl)­pyridinium and di­hydrogen­phosphate ions. The di­hydrogen­phosphate moieties are linked into chains by pairs of P—O—H⃛O—P hydrogen bonds. The 2‐(hydroxy­methyl)­pyridinium cations are connected to the di­hydrogen­phosphate units by O—H⃛O and N—H⃛O hydrogen bonds. Weak π–π interactions help to determine the interchain packing.     

Adducts of 1,1,1‐tris(4‐hydroxyphenyl)ethane with diamines: three‐dimensional hydrogen‐bonded frameworks formed with 1,6‐diaminohexane and 2,2′‐bipyridyl

The adduct 1,6‐di­amino­hexane–1,1,1‐tris(4‐hydroxy­phenyl)­ethane (1/2) is a salt {hexane‐1,6‐diyldiammonium–4‐[1,1‐bis(4‐hydroxyphenyl)ethyl]phenolate (1/2)}, C₆H₁₈N₂²⁺·2C₂₀H₁₇O₃^?, in which the cation lies across a centre of inversion in space group P. The anions are linked by two short O—H?O hydrogen bonds [H?O 1.74 and 1.76 Å, O?O 2.5702 (12) and 2.5855 (12) Å, and O—H?O 168 and 169°] into a chain containing two types of R(24) ring. Each cation is linked to four different anion chains by three N—H?O hydrogen bonds [H?O 1.76–2.06 Å, N?O 2.6749 (14)–2.9159 (14) Å and N—H?O 156–172°]. In the adduct 2,2′‐bipyridyl–1,1,1‐tris(4‐hydroxy­phenyl)­ethane (1/2), C₁₀H₈N₂·2C₂₀H₁₈O₃, the neutral di­amine lies across a centre of inversion in space group P2₁/n. The tris­(phenol) mol­ecules are linked by two O—H?O hydrogen bonds [H?O both 1.90 Å, O?O 2.7303 (14) and 2.7415 (15) Å, and O—H?O 173 and 176°] into sheets built from R(38) rings. Pairs of tris­(phenol) sheets are linked via the di­amine by means of a single O—H?N hydrogen bond [H?N 1.97 Å, O?N 2.7833 (16) Å and O—H?N 163°].     

Cocrystallization of adamantane‐1,3‐dicarboxylic acid and 4,4′‐bipyridine

The cocrystallization of adamantane‐1,3‐dicarboxylic acid (adc) and 4,4′‐bipyridine (4,4′‐bpy) yields a unique 1:1 cocrystal, C₁₂H₁₆O₄·C₁₀H₈N₂, in the C2/c space group, with half of each molecule in the asymmetric unit. The mid‐point of the central C—C bond of the 4,4′‐bpy molecule rests on a center of inversion, while the adc molecule straddles a twofold rotation axis that passes through two of the adamantyl C atoms. The constituents of this cocrystal are joined by hydrogen bonds, the stronger of which are O—H...N hydrogen bonds [O...N = 2.6801 (17) Å] and the weaker of which are C—H...O hydrogen bonds [C...O = 3.367 (2) Å]. Alternate adc and 4,4′‐bpy molecules engage in these hydrogen bonds to form zigzag chains. In turn, these chains are linked through π–π interactions along the c axis to generate two‐dimensional layers. These layers are neatly packed into a stable crystalline three‐dimensional form via weak C—H...O hydrogen bonds [C...O = 3.2744 (19) Å] and van der Waals attractions.     

2‐Benzyl­amino‐6‐benzyl­oxy­pyrimidin‐4(3H)‐one: hydrogen‐bonded chains of rings linked into sheets by a π–π‐stacking interaction

The title compound, C₁₈H₁₇N₃O₂, crystallizes with Z′ = 2 in space group P2₁/c, and the two independent mol­ecules are approximate, but not exact, mirror images. The molecular–electronic structure is strongly polarized, and the mol­ecules are linked by paired N—H⃛O hydrogen bonds [H⃛O = 2.00–2.23 Å, N⃛O = 2.798 (3)–2.992 (3) Å and N—H⃛O = 145–151°] into two independent C(4)C(6)[(6)] chains of rings, which are linked into sheets by a single aromatic π–π‐stacking interaction.     

2-[1-(Hydroxyimino)ethyl]-2,5,5-trimethylperhydropyrimidine–butane-2,3-dione monooxime (1/1)

The title compound, C₉H₁₉N₃O·C₄H₇NO₂, displays strong intramolecular O—H⃛N [O⃛N 2.6743 (13) Å] and N—H⃛N [N⃛N 2.6791 (15) Å] hydrogen bonds, and strong intermolecular O—H⃛N [O⃛N 2.7949 (15) Å] and N—H⃛O [N⃛O 3.0924 (16) Å] hydrogen bonds. This creates chains of per­hydro­pyrimidine mol­ecules, linked by hydrogen bonds. Each chain is linked to a partner chain, through hydrogen bonds to two butane-2,3-dione monooxime mol­ecules, in a structure reminiscent of a ladder.