Rheo-attenuated total reflectance infrared spectroscopy: a new tool to study biopolymers

Whilst rheology is the reference technique to study the mechanical properties of unspun silk, we know little of the structure and the dynamics that generate them. By coupling infrared spectroscopy and shearing forces to study silk fibroin conversion, we are introducing a novel tool to address this gap in our knowledge. Here the silk conversion process has been studied dynamically using polarized attenuated total reflectance Fourier transform infrared spectroscopy whilst applying shear, thus revealing silk protein conformation and molecular orientation in situ. Our results show that the silk conversion process starts with a pre-alignment of the proteins followed by a rapid growth of the β-sheet formation and then a subsequent deceleration of the growth. We propose that this tool will provide further insight into not only silk but any biopolymer solution, opening a new window into biological materials.     

Strategies for two-dimensional growth of organic molecular films

After a brief summary of the thermodynamic background on which strategies for driving molecular film growth can be pointed out, we present some recent results on the growth of oligothiophene thin films by organic molecular beam deposition, as obtained studying the film morphology by atomic force microscopy and monitoring the film growth in situ and in real-time by reflectance anisotropy spectroscopy. Three-dimensional and two-dimensional nucleation and growth are obtained by properly tuning the process conditions, such as, in particular, the substrate type and temperature, the molecular flux, and the substrate surface quality. Finally, the tuning of these parameters is used for reaching the condition of a stable layer-by-layer epitaxial growth at room temperature, fully equivalent to that well assessed for inorganics.     

Aggregation of methyl orange probed by electrical impedance spectroscopy

We present results of an electrical impedance spectroscopy investigation of the evolution of the aggregation of methyl orange (MO) in pure aqueous solutions as the concentration of the dye is varied. By applying the constant phase element (CPE) approximation to model the electrical response of the MO solutions, we have verified that the formation of dimers and oligomers can be recognized by specific signatures in the loss and capacitive components of the dielectric response of the system. We interpret these well-defined changes in the dielectric properties of the solutions as a result of molecular rearrangements caused by the aggregation process that alter the current circulation pathways and the electric dipole distribution. The fact that these specific changes in the dielectric behavior coincide with critical concentrations where dimer and oligomer formation in pure aqueous MO solutions are known to occur suggests that electrical impedance spectroscopy can be a competitive technique for the investigation of aggregation behavior in dyes and surfactants.     

Spontaneously formed trans-anethol/water/alcohol emulsions: mechanism of formation and stability

We studied the spontaneous emulsification and droplet growth mechanism in trans-anethol/water/ethanol solutions, also known as the beverage ouzo, using dynamic light scattering spectroscopy. This simple ternary mixture is a generic example of a system that forms microemulsions spontaneously when brought into the two-phase region. The volume fraction of the dispersed phase was found to profoundly affect the growth rates of the droplets, which is a new finding that has not been predicted by the Lifshitz-Slyozov-Wagner theory. Time-dependent measurements show that the droplet growth is governed by Ostwald ripening (OR), and no coalescence was observed. Furthermore, the OR rates increase with increasing oil concentration at low alcohol content. We attribute this behavior to enhanced droplet-droplet interactions. At high ethanol concentrations, we found that the measured rates decreased as the oil concentration increased. The OR growth mechanism completely correlates with changes in droplet size. The kinetics of droplet growth shows that the ripening has a saturation limit at a droplet radius of about 1.5 mum. Thus, formed emulsions remain stable for months.     

Surface induced hydrogen-bonded macrocluster formation of methanol on silica surfaces

Recently, we have succeeded in identifying the structure of the adsorption layer of ethanol on a silica surface in cyclohexane to be a hydrogen-bonded linear aggregate (polymer), which we call a surface molecular macrocluster. In this work, we studied the effect of the miscibility of liquids on the formation of the surface molecular macroclusters for confirming that this is a surface induced phenomenon. We investigated the interaction and the structure of methanol adsorbed on a silica surface in methanol-cyclohexane binary liquids by a combination of colloidal probe atomic force microscopy, adsorption excess isotherm measurement, and FTIR spectroscopy using the attenuated total reflection (ATR) mode, and compared the results with those of the ethanol-cyclohexane and 1-propanol-cyclohexane binary liquids. The former system is immiscible at methanol concentrations of ca. 8-90 mol %, and the latter two are miscible at any composition. At 0.03 mol % methanol, which is far from the critical concentration for the phase separation, the contact of the methanol macrocluster layers formed on the silica surface brought about the attraction from a distance of 42 +/- 5 nm which was similar to that observed in ethanol-cyclohexane. At a methanol concentration of 9.0 mol %, above bulk phase separation, completely different force profiles were observed. These results demonstrated that the molecular macrocluster formation was different from the wetting induced by the bulk.     

A foldamer at the liquid/graphite interface: the effect of interfacial interactions, solvent, concentration, and temperature

The unfolding process and self-assembly of a foldable oligomer (foldamer 1) at the liquid/graphite interface were investigated by scanning tunnelling microscopy. At the level of molecular conformation, we identified several molecular conformations (A(z), B, C, D, E) that represent intermediate states during unfolding, which may help to elucidate the unfolding process at the liquid/graphite interface. Adsorption at the interface traps the intermediate states of the unfolding process, and STM has proved to be a powerful technique for investigating folding and unfolding of a foldamer at the molecular level, which are not accessible by other methods. The STM observations also revealed that varying the solvent and/or concentration results in different self-assemblies of foldamer 1 as a result of variations in molecular conformations. The solvent and concentration effects were attributed to the changes in existing states (extended or folded) of foldamers in solution, which in turn affect the distribution of adsorbed molecular conformations at the interface. This mechanism is quite different from other systems in which solvent and concentration effects were also observed.     

Ultrafast dynamics of a solution in spatially restricted environments studied by photothermal spectroscopies

The ultrafast dynamics of a solution in spatially restricted environments was studied by using the ultrafast transient lens (UTL) method. The UTL method is used to monitor the molecular dynamics of a solution by means of a change in the refractive index, which is advantageous for investigating the molecular dynamics of restricted systems. We investigated the photoisomerization of azobenzene derivatives in cyclodextrin nanocavities and revealed how the confinement affects the photoisomerization dynamics and yields. We also studied the relaxation dynamics of photo-excited auramine O (AuO) in a water/aerosol-OT/n-heptane reversed micelle. Both the perturbed properties of the included water and the interactions between AuO and the interface of the reversed micelle strongly appeared to affect the relaxation dynamics. At the same time, we observed a change in the refractive index suggesting a structural change of the micelles in the picosecond region that could not be detected by transient absorption spectroscopy. In addition, we developed the total internal reflection UTL (TIR-UTL) method to monitor the ultrafast molecular dynamics at the liquid interface. The relaxation dynamics of photoexcited AuO at the silica/water interface were observed with subpicosecond time resolution, and it was revealed that the interaction with the interface strongly inhibited the relaxation process. These results demonstrated the advantages of the UTL method for investigating the molecular dynamics of a solution in spatially restricted environments.     

Relaxation dynamics in tert-butylpyridine/tristyrene mixture investigated by broadband dielectric spectroscopy

We investigated, by means of dielectric spectroscopy, the relaxation dynamics of glass forming binary mixtures composed by the quite rigid polar molecules tert-butylpyridine dissolved in the apolar solvent tristyrene. By changing the relative concentration of the components we observed a transition from a relaxation scenario with a structural process and an excess wing to that with a structural process and a well resolved secondary process. Another relaxation process, slower than the latter, was observed, well below Tg. Our detailed analysis evidenced that the secondary relaxation with shorter relaxation time can be identified as the Johari-Goldstein relaxation for all the mixtures, whereas the new relaxation process was attributed to a different type of motion of tert-butylpyridine needing a larger amount of free volume for the molecular rotation.     

Aggregates of polymer-substituted fullerenes

We analyzed the self-organized supermolecular architectures observed in solutions of singly polymer-substituted fullerenes by light-scattering and fluorescence spectroscopy, as well as the surface pattern obtained from spraying the solution by atomic force microscopy. We found that the concentration dependence on aggregate size and fluorescence intensity can be explained quantitatively using a scaling argument, assuming that the aggregates in solution are self-emulsified micelles. Our results indicate that the core of the structure is unreacted fullerenes. Based on our scaling arguments, we predict that there is a critical molecular weight that allows for a narrow distribution of the self-assembled structures in solution.     

The Role of the Prod1 Membrane Anchor in Newt Limb Regeneration

Prod1 is a protein that regulates limb regeneration in salamanders by determining the direction of limb growth. Prod1 is attached to the membrane by a glycosylphosphatidylinositol (GPI) anchor, but the role of membrane anchoring in the limb regeneration process is poorly understood. In this study, we investigated the functional role of the anchoring of Prod1 to the membrane by using its synthetic mimics in combination with solid‐state NMR spectroscopy and fluorescent microscopy techniques. Anchoring did not affect the three‐dimensional structure of Prod1 but did induce aggregation by aligning the molecules and drastically reducing the molecular motion on the two‐dimensional membrane surface. Interestingly, aggregated Prod1 interacted with Prod1 molecules tethered on the surface of opposing membranes, inducing membrane adhesion. Our results strongly suggest that anchoring of the salamander‐specific protein Prod1 assists cell adhesion in the limb regeneration process.     

Dynamic heterogeneity in the glass-like monoclinic phases of CBr(n)Cl(4-n), n = 0,1,2

Glassy dynamics of rigid molecules is still a matter of controversy: the physics behind the relaxation process at time scales faster than that ruled by the viscosity, the so called Johari-Goldstein process, is not known. In this work we unravel the mechanism of such a process by using a simple molecular model in which the centers of mass of the molecules are forming an ordered lattice, and molecular reorientation is performed by jumps between equilibrium orientations. We have studied the dynamics of simple quasi-tetrahedral molecules CBr(n)Cl(4-n), n = 0, 1, 2, in their monoclinic phases by means of dielectric spectroscopy and nuclear quadrupole resonance: the first technique allows to measure in a broad time scale but it is insensitive to molecular particularities, while the second has a restricted time window but senses the movement of each chlorine atom separately. The dynamic picture emerging from these techniques is that the secondary relaxation process is related to the different molecular surroundings around each nonequivalent atom of the molecule. Dynamical heterogeneities thus seem to be the cause of the secondary relaxation in this simple model of glass.     

光谱和分子模拟法研究乙硫异烟胺与木瓜蛋白酶的分子作用机制

利用荧光光谱、紫外光谱和分子模拟方法研究了乙硫异烟胺(TH1314)与木瓜蛋白酶之间的相互作用, 求得了不同温度下的结合常数K. 研究结果表明, 静态猝灭是导致乙硫异烟胺对木瓜蛋白酶荧光猝灭的主要原因. 通过计算热力学参数, 可知乙硫异烟胺与木瓜蛋白酶相互作用的吉布斯自由能表现为较大的负值, 并结合作用过程的焓变和熵变推断出乙硫异烟胺与木瓜蛋白酶之间的作用力是以疏水和氢键作用为主. 同时, 利用紫外光谱和同步荧光光谱定性讨论了乙硫异烟胺对木瓜蛋白酶构象的影响. 分子模拟研究表明, 乙硫异烟胺与木瓜蛋白酶的相互作用不仅存在疏水作用, 而且有氢键作用, 这与光谱及热力学研究结果是一致的.     

Secondary nucleation and growth of ZnO

Recently we discovered that under certain conditions new crystal growth (branch) can be induced on specific crystalline planes of the same material. This is a new phenomenon and is in sharp contrast to typical nucleation and growth in which a crystal will simply grow larger in preferred directions depending on the surface energy of the specific crystalline planes. Based on our observation, we developed a sequential nucleation and growth technique offering the power to assemble complex hierarchical crystals step-by-step. However, the key questions of when and how the secondary nucleation takes place have not been answered. Here we systematically study secondary ZnO crystal growth using organic diamine additives with a range of chain lengths and concentration. We found that ZnO branches form for a narrow diamine concentration range with a critical lower and upper critical nucleation concentration limit, which increases by about a factor of 5 for each additional carbon in the diaminoalkane chain. Our results suggest that the narrow window for secondary growth is dictated by the solubility of the ZnO crystals, where the low critical nucleation concentration is determined by slight etching of the surface to produce new nucleation sites, and the upper critical concentration is determined by the supersaturation concentration. Kinetic measurements show that the induction time and growth rate increase with increasing diamine concentration and follow classical nucleation and growth theory. Observations of branch morphological evolution reveal the mechanisms guiding the tunable crystal size and morphology.     

Quantitative determination of competitive molecular adsorption on gold nanoparticles using attenuated total reflectance-Fourier transform infrared spectroscopy

Surface-sensitive quantitative studies of competitive molecular adsorption on nanoparticles were conducted using a modified attenuated total reflectance-Fourier transform infrared (ATR-FTIR) spectroscopy method. Adsorption isotherms for thiolated poly(ethylene glycol) (SH-PEG) on gold nanoparticles (AuNPs) as a function of molecular mass (1, 5, and 20 kDa) were characterized. We find that surface density of SH-PEG on AuNPs is inversely proportional to the molecular mass (M(m)). Equilibrium binding constants for SH-PEG, obtained using the Langmuir adsorption model, show the binding affinity for SH-PEG is proportional to M(m). Simultaneous competitive adsorption between mercaptopropionic acid (MPA) and 5 kDa SH-PEG (SH-PEG5K) was investigated, and we find that MPA concentration is the dominant factor influencing the surface density of both SH-PEG5K and MPA, whereas the concentration of SH-PEG5K affects only SH-PEG5K surface density. Electrospray differential mobility analysis (ES-DMA) was employed as an orthogonal characterization technique. ES-DMA results are consistent with the results obtained by ATR-FTIR, confirming our conclusions about the adsorption process in this system. Ligand displacement competitive adsorption, where the displacing molecular species is added after completion of the ligand surface binding, was also interrogated by ATR-FTIR. Results indicate that for SH-PEG increasing M(m) yields greater stability on AuNPs when measured against displacement by bovine serum albumin (BSA) as a model serum protein. In addition, the binding affinity of BSA to AuNPs is inhibited for SH-PEG conjugated AuNPs, an effect that is enhanced at higher SH-PEG M(m) values.     

Destruction of hydrogen bonds of poly(N-isopropylacrylamide) aqueous solution by trimethylamine N-oxide

Trimethylamine N-oxide (TMAO) is a compatible or protective osmolyte that stabilizes the protein native structure through non-bonding mechanism between TMAO and hydration surface of protein. However, we have shown here first time the direct binding mechanism for naturally occurring osmolyte TMAO with hydration structure of poly(N-isopropylacrylamide) (PNIPAM), an isomer of polyleucine, and subsequent aggregation of PNIPAM. The influence of TMAO on lower critical solution temperature (LCST) of PNIPAM was investigated as a function of TMAO concentration at different temperatures by fluorescence spectroscopy, viscosity (η), multi angle dynamic light scattering, zeta potential, and Fourier transform infrared (FTIR) spectroscopy measurements. To address some of the basis for further analysis of FTIR spectra of PNIPAM, we have also measured FTIR spectra for the monomer of N-isopropylacrylamide (NIPAM) in deuterium oxide (D(2)O) as a function of TMAO concentration. Our experimental results purportedly elucidate that the LCST values decrease with increasing TMAO concentration, which is mainly contributing to the direct hydrogen bonding of TMAO with the water molecules that are bound to the amide (-CONH) functional groups of the PNIPAM. We believed that the present work may act as a ladder to reach the heights of understanding of molecular mechanism between TMAO and macromolecule.     

Poly(vinyl methyl ether) hydrogels at temperatures below the freezing point of water—molecular interactions and states of water

Water interacting with a polymer reveals a number of properties very different to bulk water. These interactions lead to the redistribution of hydrogen bonds in water. It results in modification of thermodynamic properties of water and the molecular dynamics of water. That kind of water is particularly well observable at temperatures below the freezing point of water, when the bulk water crystallizes. In this work, we determine the amount of water bound to the polymer and of the so-called pre-melting water in poly(vinyl methyl ether) hydrogels with the use of Raman spectroscopy, dielectric spectroscopy, and calorimetry. This analysis allows us to compare various physical properties of the bulk and the pre-melting water. We also postulate the molecular mechanism responsible for the pre-melting of part of water in poly(vinyl methyl ether) hydrogels. We suggest that above ?60 °C, the first segmental motions of the polymer chain are activated, which trigger the process of the pre-melting.     

Relaxation processes in mixtures of liquid crystals and polymers near phase boundaries and during phase separation

We present experimental studies of the relaxation of concentration fluctuations in a semidilute solution of polystyrene (PS) (30% by weight) in 4-cyano-4'-n-octyl-biphenyl (8CB) (70% by weight) using the photon correlation spectroscopy (PCS). In the homogeneous phase there are two modes of relaxation. The slow one (typical time scale is taus = 0.001 s) is due to the diffusion of polymer chains (of molecular mass 65,000) in the LC matrix (of molecular mass 290), while the fast one has the time scale of the order of tauf approximately 0.00001 s. The amplitude of the fast mode is much weaker than the one for the slow mode. Moreover it does not depend on the scattering wave vector, q. The value of the diffusion coefficient, Dc = 1/(tausq2) for the slow mode decreases with temperature according to the Arhenius law until we reach the coexistence curve. Its value close to the coexistence is Dc = 4 x 10(5) nm2/s and the activation energy in the homogeneous mixture is Ec=127 kJ/mol. If we gradually undercool the mixture below the coexistence into the metastable two-phase region without inducing the phase separation we find unexpectedly that Dc does not change with temperature even 4 degrees below the coexistence curve. The characteristic time of the fast mode does not depend on the scattering wave vector indicating that it is related to the transient gel structure. We have shown that it is possible to measure the short time relaxation of concentration fluctuations during the phase separation in the mixture. At low temperature close to the isotropic-nematic phase transition we have observed that the relaxation is well separated in time from the typical time of the domain growth. This relaxation mode is characterized by the large diffusion coefficient D = 2 x 10(8) nm2/s. The mode probably comes from the coupling between the orientational dynamics of liquid crystals and the transient gel structure of polymers.     

The effect of the molecular weight of chitosan nanoparticles and its application on drug delivery

Nanoparticulate drug delivery systems offer several advantages over conventional forms of dosing, with polymer nanoparticles prepared from biomaterials being good candidates for use in drug delivery. We selected fluorouracil (5FU) as a model drug because it has been suggested that chitosan might prevent the side effects induced by 5FU. We have exploited the complexation between oppositely charged macromolecules to develop a safe and efficient method of preparation of chitosan bead formulations for use as drug delivery systems. In this study, we examined the effect that the molecular weight of chitosan had on the resulting nanoparticles' properties; the initial concentration of chitosan was held constant, but its molecular weight was decreased through the action of NaNO₂. FTIR spectroscopy suggested that no structural change occurred during the depolymerization process. The diameters of the nanoparticles—determined using dynamic light scattering and TEM techniques—decreased as the value of the viscosity of molecular weight (Mv) of chitosan decreased. In addition, we prepared fluorouracil-loaded chitosan nanoparticles and characterized them using NMR spectroscopy. The encapsulation efficiency increased as the value of Mv of chitosan decreased. The particles produced using 55-kDa chitosan had a mean diameter of 70.6 nm and a 66% drug loading.     

Probing the Roughness of Porphyrin Thin Films with X-ray Photoelectron Spectroscopy

Thin-film growth of molecular systems is of interest for many applications, such as for instance organic electronics. In this study, we demonstrate how X-ray photoelectron spectroscopy (XPS) can be used to study the growth behavior of such molecular systems. In XPS, coverages are often calculated assuming a uniform thickness across a surface. This results in an error for rough films, and the magnitude of this error depends on the kinetic energy of the photoelectrons analyzed. We have used this kinetic-energy dependency to estimate the roughnesses of thin porphyrin films grown on rutile TiO₂(110). We used two different molecules: cobalt (II) monocarboxyphenyl-10,15,20-triphenylporphyrin (CoMCTPP), with carboxylic-acid anchor groups, and cobalt (II) tetraphenylporphyrin (CoTPP), without anchor groups. We find CoMCTPP to grow as rough films at room temperature across the studied coverage range, whereas for CoTPP the first two layers remain smooth and even; depositing additional CoTPP results in rough films. Although, XPS is not a common technique for measuring roughness, it is fast and provides information of both roughness and thickness in one measurement.     

Flow-induced crystallization regimes and rheology of isotactic polypropylene

We investigated the effect of flow in combination with molecular architecture on crystallization for linear and branched polypropylenes by means of dynamical mechanical spectroscopy. Compared to the linear polymer, the branched one exhibits much slower relaxation after deformation, causing higher levels of molecular orientation and molecular stretch for the same flow conditions. Different regimes of flow-induced crystallization are observed as a function of an increased level of molecular orientation and stretch. These regime changes cause the structure development in the material to vary from 3-dimensional spherulitical growth to nearly 1-dimensional fiber-like growth. Intermediate behavior is observed when the flow is strong (for the linear polymer) or weak enough (for the branched polymer), or in time when the effect of flow is exhausting. It is important to note that dynamical mechanical measurements can be used to probe different aspects of the (flow induced) crystallization process, such as a relative level of crystallinity and timescales of the evolution, but do not give absolute values. A correlation is found with the level of crystallinity obtained from real-time WAXS measurements and the kinetics of linear viscoelastic properties, but this correlation is not unique and depends on the pre-shear conditions applied.