Evolution of Nucleic‐Acid‐Based Constitutional Dynamic Networks Revealing Adaptive and Emergent Functions

The evolution of networks is a fundamental unresolved issue in developing the area of systems chemistry. We introduce a versatile rewiring mechanism that leads to the emergence of nucleic‐acid‐based constitutional dynamic networks (CDNs). A two‐component constituent AA′ functionalized with a Mg²⁺‐ion‐dependent DNAzyme activator unit forms a complex with an intact hairpin H_BB′ composed of B and B′ sequences. Cleavage of H_BB′ leads to the two‐component constituent BB′, and its rewiring with AA′ yields CDN X composed of the equilibrated constituents AA′, AB′, BA′, and BB′. In analogy, subjecting AA′ to an intact hairpin H_CC′ leads to the formation of CDN Y consisting of AA′, AC′, CA′, and CC′. Subjecting AA′ to the mixture of H_BB′ and H_CC′ evolves the [3×3] CDN Z, composed of nine constituents, thus demonstrating hierarchical adaptive properties. Furthermore, the DNAzyme units associated with the constituents are applied to tailor emerging catalytic functions from the different CDNs.     

The α‐L‐Threofuranosyl‐(3′→2′)‐oligonucleotide System (‘TNA'): Synthesis and Pairing Properties

Our studies of α‐L ‐Threofuranosyl‐(3′→2′)‐oligonucleotides (‘TNA') are part of a systematic experimental inquiry into the base‐pairing properties of potentially natural nucleic acid alternatives taken from RNA's close structural neighborhood. TNA is an efficient Watson‐Crick base‐pairing system and has the capability of informational cross‐pairing with both RNA and DNA. This property, together with the system's constitutional and (presumed) generational simplicity, warrants special scrutiny of TNA in the context of the search for chemical clues to RNA's origin.     

Triazine‐Cored Lanthanide‐Based Metal–Organic Frameworks Featuring Unique Water Chains and Strong Characteristic Emissions

A new triazine‐cored tricarboxylic acid, N,N′,N“‐1,3,5‐triazine‐2,4,6‐triyltris(cis‐4‐aminocyclohexane‐carboxylic acid) (H₃L), has been prepared by replacing the chlorine atoms of cyanuric chloride with cis‐4‐aminocyclohexane‐carboxylic acid, which has been used for the construction of a series of triazine‐cored lanthanide‐based metal–organic frameworks (MOFs). All these MOFs were structurally authenticated, revealing that they are isostructural and exist as two‐dimensional (2D) coordination networks with the general formula [Ln(L)(H₂O)₂]?5.5 H₂O (Ln= 1?Gd , 2?Tb , 3?Eu ). A unique one‐dimensional water chain, composed of primary tetrameric cyclic rings and dodecameric cyclic rings, has been found entrapped in the lattice. Moreover, all these compounds display bright characteristic photoluminescence. Particularly, for 1 , apart from the strong blue emission peak (Φ_f=20.6 %) corresponding to the intraligand transition under near‐UV excitation, the characteristic emissions of Gd³⁺ cation (Φ_f=5.0 %) were unexpectedly observed upon excitation at 273 nm.     

Microsynthesis and mass spectral study of Chemical Weapons Convention related 2‐alkyl‐1,3,6,2‐dioxathiaphosphocane‐2‐oxides

Chemical Weapons Convention (CWC)‐related compounds where the phosphorus atom is part of a ring have very limited representation in mass spectral libraries and the open literature. Here we report electron ionization (EI), chemical ionization (CI) and electrospray ionization tandem mass spectrometry (ESI‐MSⁿ) spectra and retention indices for 2‐alkyl‐1,3,6,2‐dioxathiaphosphocane‐2‐oxides (alkyl C₁ to C₃) which are new cyclic chemicals covered under the CWC. The EI mass spectra show a pattern of ion fragmentation that is similar to that of other cyclic phosphonates in that loss of the alkylphosphonic acid as a neutral loss is more important than the presence of the protonated alkylphosphonic acid. In contrast to other cyclic phosphonates, the 2‐alkyl‐1,3,6,2‐dioxathiaphosphocane‐2‐oxides show almost no protonated alkylphosphonic acid and as a result the spectra do not carry the same distinctive signature of the phosphorus–carbon bond that is required for the chemical to be covered under the CWC. Copyright © 2008 John Wiley & Sons, Ltd.     

Lipase‐Catalyzed Transformation of Unnatural‐Type Poly(3‐hydroxybutanoate) into Reactive Cyclic Oligomer

Unnatural‐type syndiotactic and atactic poly[(R,S)‐3‐hydroxybutanoate]s [P(3HB)s] were enzymatically transformed into a reactive cyclic 3HB oligomer of molecular weight ca. 500 in an organic solvent, such as toluene, using immobilized lipase from Candida antarctica at 40°C for 24 h. It was confirmed that similar results were obtained for both syndiotactic and atactic P(3HB)s. On the other hand, the acidic degradation of these polymers using a protonic acid, such as p‐toluenesulfonic acid, exclusively produced the linear 3HB oligomer instead of the cyclic oligomer. The formation of the cyclic oligomer was regarded as the characteristic feature of the lipase‐catalyzed degradation in organic media. The cyclic oligomer obtained readily reacted with alcohol as a nucleophile, and using lipase, to produce the alkyl ester of the 3HB oligomer.     

O‐2′,3′‐Ketal‐Nucleolipids of the Cytostatic 5‐Fluorouridine: Synthesis,Lipophilicity, and Acidic Stability

The synthesis of a series of cyclic and acyclic O‐2′,3′‐ketal derivatives of the cancerostatic 5‐fluorouridine ( 2a ) is described. The novel compounds were characterized by ¹H‐ and ¹³C‐NMR, and UV spectroscopy, as well as by elemental analyses. The lipophilicity values (log P, retention times in RP‐18 HPLC) of the cyclic ketals were determined and related to the ring tensions as well as the acid stability of the spiro‐linked ketal rings.     

Poly(methacrylic acid)‐grafted clay–thermoplastic elastomer composites with water‐induced shape‐memory effects

Composites with excellent water‐induced shape‐memory effects (SMEs) were successfully synthesized by first using clay as the SME‐activating phase and thermoplastic polyurethane (TPU) as the matrix. Naturally abundant clay was grafted with poly(methacrylic acid) (PMAA) to improve particle interactions, which allowed for the formation of strong percolation networks in the composites, determined by swelling tests and dynamic mechanical analysis in combination with theoretical modeling. This led to significant improvements of the polymer modulus and high water absorptions, causing reversible modulus changes of up to 30 times from the wet to the dry condition. The results from cyclic wetting‐drying‐stretching tests showed the TPU–clay composite containing 10.4 vol % PMAA‐grafted clay exhibited the best SMEs among the composites investigated, with the shape fixity and shape recovery ratios being 82% and 91%, respectively. Besides SMEs, these new polymer–clay composites were also pH‐sensitive and mechanically adaptive upon exposure to water. © 2013 Wiley Periodicals, Inc. J. Polym. Sci., Part B: Polym. Phys. 2013 , 51, 1513–1522     

New trans/cis tetrahydroisoquinolines. 1. trans‐2‐benzyl‐3‐(l‐methyl‐1h‐pyrrol‐2‐yl)‐4‐substituted‐1,2,3,4‐tetrahydroisoquinolin‐1‐ones and corresponding tetrahydroisoquinolines

The reaction of homophthalic anhydride and N‐(1‐methyl‐1H‐pyrrol‐2‐yl‐methylidene)‐benzylamine in boiling benzene afforded as a main product the expected substituted trans‐1,2,3,4‐tetrahydroisoquinoline‐4‐carboxylic acid 5 . The carboxylic group of 5 was transformed in four steps into cyclic amino‐methyl groups yielding numerous new tetrahydroisoquinolinones 11a‐j incorporating a given fragment of pharmacological interest. Reduction of 11a‐j was studied.     

High‐Tg Thiol‐Click Thermoset Networks via the Thiol‐Maleimide Michael Addition

Thiol‐click reactions lead to polymeric materials with a wide range of interesting mechanical, electrical, and optical properties. However, this reaction mechanism typically results in bulk materials with a low glass transition temperature (T_g) due to rotational flexibility around the thioether linkages found in networks such as thiol‐ene, thiol‐epoxy, and thiol‐acrylate systems. This report explores the thiol‐maleimide reaction utilized for the first time as a solvent‐free reaction system to synthesize high‐T_g thermosetting networks. Through thermomechanical characterization via dynamic mechanical analysis, the homogeneity and T_gs of thiol‐maleimide networks are compared to similarly structured thiol‐ene and thiol‐epoxy networks. While preliminary data show more heterogeneous networks for thiol‐maleimide systems, bulk materials exhibit T_gs 80 °C higher than other thiol‐click systems explored herein. Finally, hollow tubes are synthesized using each thiol‐click reaction mechanism and employed in low‐ and high‐temperature environments, demonstrating the ability to withstand a compressive radial 100 N deformation at 100 °C wherein other thiol‐click systems fail mechanically.

     

Hydrogen bonding in cyclic imides and amide carboxylic acid derivatives from the facile reaction of cis‐cyclohexane‐1,2‐carboxylic anhydride with o‐ and p‐anisidine and m‐ and p‐aminobenzoic acids

The structures of the open‐chain amide carboxylic acid rac‐cis‐2‐[(2‐methoxyphenyl)carbamoyl]cyclohexane‐1‐carboxylic acid, C₁₅H₁₉NO₄, (I), and the cyclic imides rac‐cis‐2‐(4‐methoxyphenyl)‐3a,4,5,6,7,7a‐hexahydroisoindole‐1,3‐dione, C₁₅H₁₇NO₃, (II), chiral cis‐3‐(1,3‐dioxo‐3a,4,5,6,7,7a‐hexahydroisoindol‐2‐yl)benzoic acid, C₁₅H₁₅NO₄, (III), and rac‐cis‐4‐(1,3‐dioxo‐3a,4,5,6,7,7a‐hexahydroisoindol‐2‐yl)benzoic acid monohydrate, C₁₅H₁₅NO₄·H₂O, (IV), are reported. In the amide acid (I), the phenylcarbamoyl group is essentially planar [maximum deviation from the least‐squares plane = 0.060 (1) Å for the amide O atom] and the molecules form discrete centrosymmetric dimers through intermolecular cyclic carboxy–carboxy O—H...O hydrogen‐bonding interactions [graph‐set notation R₂²(8)]. The cyclic imides (II)–(IV) are conformationally similar, with comparable benzene ring rotations about the imide N—C_ar bond [dihedral angles between the benzene and isoindole rings = 51.55 (7)° in (II), 59.22 (12)° in (III) and 51.99 (14)° in (IV)]. Unlike (II), in which only weak intermolecular C—H...O_imide hydrogen bonding is present, the crystal packing of imides (III) and (IV) shows strong intermolecular carboxylic acid O—H...O hydrogen‐bonding associations. With (III), these involve imide O‐atom acceptors, giving one‐dimensional zigzag chains [graph‐set C(9)], while with the monohydrate (IV), the hydrogen bond involves the partially disordered water molecule which also bridges molecules through both imide and carboxy O‐atom acceptors in a cyclic R₄⁴(12) association, giving a two‐dimensional sheet structure. The structures reported here expand the structural database for compounds of this series formed from the facile reaction of cis‐cyclohexane‐1,2‐dicarboxylic anhydride with substituted anilines, in which there is a much larger incidence of cyclic imides compared to amide carboxylic acids.     

Polytetrahydrofuran amphiphilic networks. IV. Swelling behavior of poly(acrylic acid)‐l‐polytetrahydrofuran and poly(methacrylic acid)‐l‐polytetrahydrofuran networks

Poly(acrylic acid)‐l‐polytetrahydrofuran (PAA‐l‐PTHF) and poly(methacrylic acid)‐l‐polytetrahydrofuran (PMAA‐l‐PTHF) networks were synthesized by the free‐radical copolymerization of hydrophobic polytetrahydrofuran diacrylates with hydrophilic acrylic acid and methacrylic acid. Their swelling behavior was studied. Both PAA‐l‐PTHF and PMAA‐l‐PTHF networks had four solubility parameters, which indicated that they exhibited not only the properties of both hydrophobic and hydrophilic segments but also the combined properties of these two segments. The swell of these two series of networks was composition‐dependent in organic solvents and water. The relationship between the equilibrium swelling ratio (SR_e) in nonpolar solvents and the composition of the networks [the weight fraction of the PTHF segment (PTHF%)] may be expressed with a linear equation: SR_e = A × PTHF% + B. A and B are parameters that relate to the interaction of hydrophilic and hydrophobic segments with nonpolar solvents and to the properties of the networks, respectively. Because of the presence of a ? COOH group, these two network series were pH‐sensitive when the content of hydrophilic segments was higher. The pH sensitivity of networks could be controlled not only by the composition of the networks but also by the hydrophobic degree of the hydrophilic segments. © 2001 John Wiley & Sons, Inc. J Polym Sci Part B: Polym Phys 39: 1784–1790, 2001     

From poly(N‐isopropylacrylamide)‐block‐poly(ethylene oxide)‐block‐poly(N‐isopropylacrylamide) triblock copolymer to poly(N‐isopropylacrylamide)‐block‐poly(ethylene oxide) hydrogels: Synthesis and rapid deswelling and reswelling behavior of hydrogels

Poly(N‐isopropylacrylamide)‐block‐poly(ethylene oxide)‐block‐poly(N‐isopropylacrylamide) (PNIPAAm‐b‐PEO‐b‐PNIPAAm) triblock copolymer was synthesized via the reversible addition‐fragmentation chain transfer/macromolecular design via the interchange of xanthate (RAFT/MADIX) process with xanthate‐terminated poly(ethylene oxide) (PEO) as the macromolecular chain transfer agent. The successful synthesis of the ABA triblock copolymer inspired the preparation of poly(N‐isopropylacrylamide)‐block‐poly(ethylene oxide) (PNIPAAm‐b‐PEO) copolymer networks with N,N′‐methylenebisacrylamide as the crosslinking agent with the similar approach. With the RAFT/MADIX process, PEO chains were successfully blocked into poly(N‐isopropylacrylamide) (PNIPAAm) networks. The unique architecture of PNIPAAm‐b‐PEO networks allows investigating the effect of the blocked PEO chains on the deswelling and reswelling behavior of PNIPAAm hydrogels. It was found that with the inclusion of PEO chains into the PNIPAAm networks as midblocks, the swelling ratios of the hydrogels were significantly enhanced. Furthermore, the PNIPAAm‐b‐PEO hydrogels displayed faster response to the external temperature changes than the control PNIPAAm hydrogel. The accelerated deswelling and reswelling behaviors have been interpreted based on the formation of PEO microdomains in the PNIPAAm networks, which could act as the hydrophilic tunnels to facilitate the diffusion of water molecules in the PNIPAAm networks. © 2012 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2012     

Gas‐phase fragmentation study of a novel series of synthetic 2‐oxo‐2H‐benzopyrano[2,3‐d]pyrimidine derivatives using electrospray ionization tandem mass spectroscopy measured with a quadrupole orthogonal time‐of‐flight hybrid instrument

The fragmentation patterns of a series of six novel synthesized benzopyranopyrimidine derivatives 1–6, possessing the same 2‐oxo‐2H‐benzopyrano[2,3‐d]pyrimidine backbone structure, were investigated by electrospray ionization mass spectrometry (ESI‐MS) and tandem mass spectrometry (MS/MS) techniques using a quadrupole orthogonal time‐of‐flight (QqToF)‐hybrid instrument. The series of six pure benzopyranopyrimidine compounds contained three constitutional isobaric isomers (compounds 4–6). A simple methodology, based on the use of ESI (positive ion mode) and increasing the declustering potential in the atmospheric pressure/vacuum interface resulting in collision‐induced dissociation (CID), was used to enhance the formation of the product ions. In general, the novel synthetic benzopyranopyrimidine derivatives 1–6 afforded exact accurate masses for the protonated molecules. This led to the confirmation of both molecular masses and chemical structures of the studied compounds. The breakdown routes of the protonated molecules were rationalized by conducting low‐energy CID‐MS/MS analyses. It was shown that the MS/MS fragmentation routes for the protonated molecules 1 and 2 were similar, and that the MS/MS fragmentations of the constitutional isobaric protonated molecules 5 and 6 were identical. It was also shown that the gas‐phase CID fragmentations of 5 and 6 were different from that of their constitutional isomer 4. Finally, the ESI‐MS and CID‐MS/MS analyses of the protonated molecules that were obtained from the monodeuterated benzopyranopyrimidine derivatives 1–6 confirmed the values obtained for the exact masses, the precise structural assignments of all product ions and all the pathways described in the proposed CID fragmentations. Copyright © 2008 John Wiley & Sons, Ltd.     

Facile and Selective Synthesis of 4‐Methyl‐ and 4‐Phenylthiosemicarbazide (=N‐Methyl‐ and N‐Phenylhydrazinecarbothioamide) Derivatives of Benzil (=1,2‐Diphenylethane‐1,2‐dione)

A selective synthesis of 4‐methylthiosemicarbazide (=N‐methylhydrazinecarbothioamide; 4a ) derivatives by reaction with benzil (=1,2‐diphenylethane‐1,2‐dione; 3 ) is described. The reaction conditions determined the condensation product formed. The most important factor was the acid used: in the presence of conc. HCl solution, the open‐chain 2 : 1 compound 1a was exclusively obtained, whereas in the presence of 2M HCl, the cyclic 1 : 1 condensation product 2a was formed. The alcohol used, the presence of H₂O, and the time of heating were additional crucial factors. The new cyclic compound 2a with a MeO group was exclusively formed when working under high‐dilution conditions. The reaction with the 4‐phenyl derivative 4b gave new cyclic compounds as the major products under all conditions used (Scheme).     

Water‐soluble polymers from acid‐functionalized norbornenes

Unprotected exo,exo‐5‐norbornene‐2,3‐dicarboxylic acid and exo,exo‐7‐oxa‐5‐norbornene‐2,3‐dicarboxylic acid were polymerized via ring‐opening metathesis polymerization. This reaction yielded polymers with molecular weights (M_n from GPC) ranging from 31 to 242 kg/mol and polydispersity indices between 1.05 and 1.12, using Grubbs' third generation catalyst. The water solubility as a function of pH value of the polymers was investigated by dynamic light scattering (DLS). DLS and acid‐base titration revealed that the oxanorbornene polymer was water soluble over a wider pH range than its norbornene analog. © 2009 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 47: 1266–1273, 2009     

Formation of linear and cyclic polyoxetanes in the cationic ring‐opening polymerization of 3‐allyloxymethyl‐3‐ethyloxetane and subsequent postpolymerization modification of poly(3‐allyloxymethyl‐3‐ethyloxetane)

The synthesis of 3‐allyloxymethyl‐3‐ethyloxetane (AllylEHO) and its polymerization with BF₃ × Et₂O is described in this study. Size exclusion chromatography (SEC) and membrane osmometry are used for the determination of molecular weights of the obtained products, ranging from M_n,SEC = 41,500‐131,500 g/mol. ¹H NMR spectroscopy, SEC, as well as MALDI‐TOF MS reveal the formation of cyclic tetramer beside low, but detectable concentrations of larger cyclic oligomers as by‐products during the polymerization process. These results help to understand mechanistically why attempts for a controlled homopolymerization of AllylEHO fail and why a controlled homopolymerization of oxetanes has not been described so far in the literature. Additionally, the high versatility of allyl‐functional polyoxetane for postpolymerization modification is proven by thiol–ene reactions with 3‐mercaptopropionic acid and N‐acetyl‐L ‐cysteine methyl ester. © 2012 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2013     

Chemie freier cyclischer vicinaler Tricarbonyl‐Verbindungen (‘1,2,3‐Trione') Teil 2. Redox‐Reaktionen von 1,2,3‐Trionen mit En‐1,2‐diolen (‘Reduktonen'), 2‐Alkoxy‐en‐1‐olen,En‐1,2‐diaminen und verwandten Spezies

Chemistry of Free Cyclic Vicinal Tricarbonyl Compounds (‘1,2,3‐Triones'). Part 2. Redox Reactions of 1,2,3‐Triones with Ene‐1,2‐diols (‘Reductones'), 2‐Alkoxy‐en‐1‐ols, Ene‐1,2‐diamines, and Related Species . Midstanding carbonyl groups of cyclic 1,2,3‐triones 4 possess outstanding electrophilic (electron‐pair accepting) as well as oxidizing (one‐electron accepting) properties. Their reactions with selected electron‐rich CC bonds as efficient nucleophiles (A_N reactions) and as efficient reducing agents (SET (single electron transfer) reactions) are studied. In a few cases, short‐lived charge‐transfer colors could be observed. Particularly, free didehydro‐5,6‐O‐isopropyliden‐L ‐ascorbic acid ( 4g ), its O,C‐adduct 8g to 5,6‐O‐isopropylidene‐L ‐ascorbic acid ( 1g ), and – via an independent pathway – the ostensible C,C‐dimer 10a of mono‐dehydrodimedone reductone were prepared. Intermediate radical anions 4 ^.− can be considered to be ideal representatives of dicapto‐dative radicals. Novel large‐scale syntheses of 3,4‐dihydroxyfuran‐2(5H)‐one ( 1e ) and of its vicinal trione 4e are presented.     

Preparation of novel,high‐modulus,swollen‐ or jungle‐gym‐type polyimide gels end‐crosslinked with 1,3,5‐tris(4‐aminophenyl)benzene

A novel preparation approach for high‐performance polyimide gels that are swollen or have a jungle‐gym‐type structure is proposed. A new rigid and symmetric trifunctional amine, 1,3,5‐tris(4‐aminophenyl)benzene (TAPB), was synthesized as a crosslinker. Three different kinds of amic acid oligomers derived from pyromellitic dianhydride (PMDA), 4,4′‐oxydiphthalic anhydride (ODPA), p‐phenylenediamine (PDA), and 4,4′‐oxydianiline (ODA) were end‐crosslinked with TAPB at a high temperature to make polyimide networks with different structures. Transparent polyimide gels were obtained from the ODPA–ODA/TAPB series with high compression moduli of about 1 MPa at their equilibrium swollen states in N‐methylpyrrolidone. Microscopic phase separation occurred during the gelation–imidization process when polyimide networks were generated from PMDA–PDA/TAPB and PMDA–ODA/TAPB. After these opaque polyimide networks were dried, a jungle‐gym‐like structure was obtained for the PMDA–PDA/TAPB and PMDA–ODA/TAPB series; that is, there was a high void content inside the networks (up to 70%) and little volume shrinkage. These polyimide networks did not expand but absorbed the solvent and showed moduli as high as those of solids. Therefore, using the highly rigid crosslinker TAPB combined with the flexible monomers ODPA and ODA and the rigid monomers PMDA and PDA, we prepared swollen, high‐performance polyimide gels and jungle‐gym‐type polyimide networks, respectively. © 2002 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 40: 2501–2512, 2002     

Topological polymer chemistry by electrostatic self‐assembly

Recent developments in topological polymer chemistry are outlined. First, nonlinear polymer topologies are systematically classified on the basis of topological considerations of constitutional isomerism in a series of alkanes (C_nH_2n+2), monocycloalkanes (C_nH_2n), and polycycloalkanes (C_nH_2n?2, C_nH_2n?4, etc.). Various pairs of topological isomers are identified in randomly coiled, flexible polymer molecules with cyclic and branched structures. An electro‐ static self‐assembly and covalent fixation strategy has subsequently been developed for the efficient synthesis of a variety of topologically unique polymers, including monocyclic and polycyclic polymers, topological isomers, and topological block copolymers. In this process, new telechelics with moderately strained cyclic onium salt groups carrying multifunctional carboxylate counteranions have been designed as key polymeric precursors. Further extensions of topological polymer chem‐ istry have been achieved by the use of cyclic telechelics (kyklo‐telechelics) and cyclic macromonomers, obtainable also by means of the electrostatic self‐assembly and covalent fixation process. © 2003 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 41: 2905–2917, 2003     

Charge‐derivatized amino acids facilitate model studies on protein side‐chain modifications by matrix‐assisted laser desorption/ionization time‐of‐flight mass spectrometry

The α‐amino groups of histidine and lysine were derivatized with p‐carboxylbenzyltriphenylphosphonium to form the pseudo dipeptides, PHis and PLys, which can be sensitively detected by matrix‐assisted laser desorption/ionization time‐of‐flight mass spectrometry (MALDI‐TOFMS) due to the fixed positive charge of the phosphonium group. Detection limits of PHis and PLys by MALDI‐TOFMS were both 30 fmol with a signal‐to‐noise ratio of 5:1. These pseudo dipeptides were excellent surrogates for His‐ or Lys‐containing peptides in model reactions mimicking proteins with reactive electrophiles, prominently those generated by peroxidation of polyunsaturated fatty acids including 4‐hydroxy‐2(E)‐nonenal (HNE), 4‐oxo‐2(E)‐nonenal (ONE), 2(E)‐octenal, and 2(E)‐heptenal. An air‐saturated solution of linoleic acid (d₀:d₅ = 1:1) was incubated in the presence of Fe(II) and ascorbate with these two pseudo dipeptides, and the reaction products were characterized by MALDI‐TOFMS and liquid chromatography/electrospray ionization mass spectrometry (LC/ESI‐MS). By using PHis and PLys, the previously reported ONE‐derived His‐furan adduct was detected along with evidence for a cyclic α,β‐unsaturated ketone. A dimer formed from ONE was found to react with PHis through Michael addition. Alkenals were found to form two novel adducts with PLys. 2(E)‐Octenoic acid–His Michael adduct and N^ε‐pentanoyllysine were identified as potential protein side‐chain adducts modified by products of linoleic acid peroxidation. In addition, when PHis or PLys and AcHis or BocLys were exposed to the linoleic acid peroxidation, an epoxy‐keto‐ocatadecenoic acid mediated His–His cross‐link was detected, along with the observation of a His–ONE/9,12‐dioxo‐10‐dodecenoic acid–Lys derived pyrrole cross‐link. Copyright © 2009 John Wiley & Sons, Ltd.