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1.
化学位移估算研究ATP构象随溶液pH值的变化   总被引:2,自引:0,他引:2  
利用Johnson和Bovey的理论和方法计算了不同扭曲角χ(O4′-C1′-N9-C4)的ATP(5′-三磷酸腺苷)分子中糖环质子H1′和H2′由于环流效应引起的化学位移.H1′的化学位移与扭曲角χ有较强的依赖关系,反映了ATP在溶液中细微的构象变化.将计算结果与实验结果比较,证明在本文讨论的pH值范围(1~10)内,Mg2+加入后,ATP的扭曲角χ在230~360°范围内变化.随溶液的pH值减小,ATP分子的构象由trans 构象通过-gauche构象转变为cis构象. 从而证明在酸性条件下, ATP倾向于以cis构象存在,而在碱性条件下trans构象更为稳定,从另一方面支持了在酸性条件下N1参与配位而在碱性条件下N7参与配位的结论.在讨论中也考虑了由pH变化所引起的环流强度的变化.  相似文献   

2.
合成了1,3-丙二胺邻苯二酚钼钨手性八面体配合物(NH3CH2CH2CH2NH2)2[M0o.4W0.6(C6H402)2],并对其进行了单晶结构解析,研究了其与ATP作用的液相NMR谱.该晶体属正交晶系。空间群为Pcan.晶胞参数口=O.7501(2)nm,6=2.3994(7)nm,c=1.2178(4)nm,Z=4.[Moo.4wDl602(C6H402)2]。一的配位几何构型为手性八面体,晶体为外消旋体.配位阴离子中MoW中心金属离子除了与两个端基0配位形成cis-M=0键外,同时还分别与两个邻苯二酚配位基团的的氧原子配位,形成4个M-Ob(M=Mo,W)键,构成两个五元环.利用^1HNMR,^13C NMR,^31PNMR以及^1H-^15N HMBC对标题配合物及其与ATP在D2O溶剂中的作用进行了研究,发现标题配合物的MoW中心金属离子在纯D2O溶剂中被还原成 5价,但与ATP混合后转化为 6价,且与原配位基邻苯二酚发生解离.解离后的[MOz]^2 最大可能与腺嘌呤上的氨基N原子配位。而此配位可能是其抗癌抗肿瘤活性的主要作用机理之一。  相似文献   

3.
建立了无损伤性^31P-NMR研究细胞内代谢物的实验方法,并对人早幼粒白血病细胞HL-60的^31P-NMR谱中含磷小分子代谢物的谱峰进行了分析;通过测量HL-60的^31P-NMR谱中ATP的仅磷和β磷的化学位移差值,得出HL-60细胞内Mg^2 与ATP结合的复合物MgATP和整个ATP量的比值,计算得到HL-60细胞内游离Mg^2 浓度为0.264mmol/L。与其它分析方法相比,^31P-NMR测定细胞内游离Mg^2 浓度具有对细胞样品无损伤的优点。  相似文献   

4.
吴养洁  宋毛平  杨立  陈继红 《化学学报》1994,52(11):1133-1139
本文合成了一系列共13种芳基-8-喹啉氧基汞化合物,其中12种为新化合物, 经IR,^1H NMR和元素分析鉴定了其组成与结构,紫外光谱研究表明分子中存在有N→Hg分子内配位.提出了溶剂效应对紫外光谱性质和N→Hg分子内配位影响的机理. 核磁共振氢谱表明取代基仅影响汞-苯环质子的化学位移,说明共轭效应未通过分子内配位贯穿于整个分子.^1^9^9Hg化学位移值与Hammett-Brown常数σ^+间存在有良好的线性关系  相似文献   

5.
肿瘤坏死因子α和γ-干扰素对白血病细胞作用的31PNMR分析   总被引:3,自引:0,他引:3  
用^31P核磁共振观察了肿瘤坏死因子α(TNF-α)和γ-干扰素(IFN-γ)联合对人淋巴瘤白血病细胞系Molt-4作用后含磷化合物的变化;Molt-4细胞系的^31P谱主要由三磷酸腺苷(ATP)、无机磷(Pi)、磷酸单酯等的共振峰组成;^31P谱显示γ-干扰素、肿瘤坏死因子α及γ-干扰素和肿瘤坏死因子α联合对Molt-4细胞作用后,三磷酸腺式苷的β位磷的共振峰与无机磷的峰高比值(hATP/hPi)不同程度地降低;同时根据Pi的化学位移对Molt-4细胞胞内pH的变化进行了监测。  相似文献   

6.
合成和表征Na~2[Cu(L-Ala)~2(5'-GMP)].2H~2O、Na~2[Cu(L-Ala)~2(5'-IMP)].6H~2O、Na~2[Cu(L-His)(5'-GMP)Cl~2^2.2H~2O和Na~2[Cu(L-His)(5'-IMP)Cl~2].H~2O四个新的三元配合物, 其中两个L-Ala分子通过羧基O和α-氨基N与Cu(II)成反式配位, 一个L-His分子通过羧基O和咪唑环上的N与Cu(II)配位; 一个5'-GMP或5'-IMP分子嘌呤环上的N(7)与Cu(II)配位; 5'-GMP的磷酸根上可能存在强氢键, 而5'-IMP的磷酸根上不存在强氢键; 在含L-Ala三元配合物中, 5'-GMP的C(6)=0可能参与配位或形成强氢键, 而5'-IMP的C(6)=0不参与配位或形成配位或形成强氢键; 在含L-His三元配合物中, 5'-IMP的C(6)=0的表现则相反。  相似文献   

7.
Cu(II)-氨基酸-核苷酸三元配合物的合成和表征   总被引:4,自引:0,他引:4  
邵昌平  张凡  郭和夫 《化学学报》1993,51(10):973-977
合成和表征Na~2[Cu(L-Ala)~2(5'-GMP)].2H~2O、Na~2[Cu(L-Ala)~2(5'-IMP)].6H~2O、Na~2[Cu(L-His)(5'-GMP)Cl~2^2.2H~2O和Na~2[Cu(L-His)(5'-IMP)Cl~2].H~2O四个新的三元配合物, 其中两个L-Ala分子通过羧基O和α-氨基N与Cu(II)成反式配位, 一个L-His分子通过羧基O和咪唑环上的N与Cu(II)配位; 一个5'-GMP或5'-IMP分子嘌呤环上的N(7)与Cu(II)配位; 5'-GMP的磷酸根上可能存在强氢键, 而5'-IMP的磷酸根上不存在强氢键; 在含L-Ala三元配合物中, 5'-GMP的C(6)=0可能参与配位或形成强氢键, 而5'-IMP的C(6)=0不参与配位或形成配位或形成强氢键; 在含L-His三元配合物中, 5'-IMP的C(6)=0的表现则相反。  相似文献   

8.
测定了各pD值下BPHA[BPHA是N,N'-bis(2-aminoethyl)-1,3-propanediaminehexaaceticacid的简称,中文名称为二胺乙基丙二胺六乙酸]和Zn^2^+-BPHA的^1HNMR谱。BPHA两端羧甲基上亚甲基质子的化学位移δ~a和中间羧甲基上亚甲基质子的化学位移δ~b随pD值交替变化。Zn^2^+-BPHA的^1HNMR谱有3种情况:pD<6,对应Zn(II)-H~2BPHA^4^-,有一特征尖峰,显示自由-NH^+(CH~2COO^-)~2残基存在;pD=6-9,对应Zn(II)-HBPHA^5^-,该峰消失,显示4个胺基全部配位;pD>9,对应Zn(II)-BPHA^6^-,该峰再次出现,1个N(CH~2COO^-)~2脱离配位体系。在3种形态的配合物中,Zn-N键都是非活性的,Zn-O键在后两种形态配合物中是非活性的。  相似文献   

9.
测定了各pD值下BPHA[BPHA是N,N'-bis(2-aminoethyl)-1,3-propanediaminehexaaceticacid的简称,中文名称为二胺乙基丙二胺六乙酸]和Zn^2^+-BPHA的^1HNMR谱。BPHA两端羧甲基上亚甲基质子的化学位移δ~a和中间羧甲基上亚甲基质子的化学位移δ~b随pD值交替变化。Zn^2^+-BPHA的^1HNMR谱有3种情况:pD<6,对应Zn(II)-H~2BPHA^4^-,有一特征尖峰,显示自由-NH^+(CH~2COO^-)~2残基存在;pD=6-9,对应Zn(II)-HBPHA^5^-,该峰消失,显示4个胺基全部配位;pD>9,对应Zn(II)-BPHA^6^-,该峰再次出现,1个N(CH~2COO^-)~2脱离配位体系。在3种形态的配合物中,Zn-N键都是非活性的,Zn-O键在后两种形态配合物中是非活性的。  相似文献   

10.
本文在不同PH条件下研究了反铂与鸟苷的相互作用, 析出了不同结合方式的配合物, 并作了表征。用^1^3C和^1H NMR研究反铂与鸟苷不同方式的结合对G-C碱基对氢键的影响时发现, 反铂结合于鸟嘌呤N(7)对G-C配对能力有一定削弱, 但不能完全阻断G-C配对, 只有当反铂和鸟嘌呤的N(7)配位, 同时N(1)脱质子时才有可能完全中断G-C配位。  相似文献   

11.
The conformation of the complex of [ATP-Mg]2+ is studied by 1H, 15N and 31P NMR on ATP in the absence and presence of MgCl2 in a wide pH range from 1 to 10. 1H-15N HMBC experiments show a large change in the 15N chemical shift of N1 up to 10 ppm around pH 3.7, suggesting that there is a strong interaction between Mg2+ and N1 of ATP at this pH. 31P NMR indicates that at pH 3.7 the phosphate chain also binds Mg2+. 1H diffusion measurements imply that the [ATP-Mg]2+ complex involves only one ligand and one metal ion.  相似文献   

12.
Interaction of polyamines with nucleotides plays a key role in many biological processes. Here we use multiple NMR techniques to characterize interaction of spermidine with adenosine 5′‐triphosphate (ATP). Two‐dimensional 1H‐15N spectra obtained from gs‐HMBC experiments at varied pH show significant shift of N‐1 peak around pH 2.0–7.0 range, suggesting that spermidine binds to N‐1 site of ATP base. The binding facilitates N‐1 deprotonation, shifting its pKa from 4.3 to 3.4. By correlating 15N and 31P chemical shift data, it is clear that spermidine is capable of concurrently binding to ATP base and phosphate sites around pH 4.0–7.0. The self‐diffusion constants derived from 1H PFG‐diffusion measurements provide evidence that binding of spermidine to ATP is in 1:1 ratio, and pH variations do not induce significant nucleotide self‐association in our samples. 31P spectral analysis suggests that at neutral pH, Mg2+ ion competes with spermidine and shows stronger binding to ATP phosphates. From 31P kinetic measurements of myosin‐catalyzed ATP hydrolysis, it is found that binding of spermidine affects the stability and reactivity of ATP. These NMR results are important for advancing the studies on nucleotide–polyamine interaction and its impact on nucleotide structures and activities under varied conditions. Copyright © 2009 John Wiley & Sons, Ltd.  相似文献   

13.
The supramolecular interactions of Mg(ii) and N(alpha)-4-tosyl-l-arginine methyl ester hydrochloride (TAME) with ATP have been investigated using (1)H and (31)P NMR spectra. Furthermore, the hydrolysis of ATP catalyzed by Mg(ii) and TAME has been studied at 60 degrees C and pH 7 using (31)P NMR spectra. In the Mg(ii)-ATP-TAME ternary system, the binding interaction of Mg(2+) with ATP involves not only N1 and N7 in the adenine ring but also beta- and gamma-phosphate of ATP. The binding forces are mainly electrostatic interaction and cation (Mg(2+))-pi interaction. The guanidinium group and the aromatic ring of TAME interacts with ATP by beta and gamma phosphate and the adenine ring of ATP. The binding forces are mainly electrostatic interactions and pi-pi stacking. A significant difference between the binary and the ternary system indicates that TAME is essential to the stablization of the intermediate. Kinetic studies show that the hydrolysis rate constant of ATP is 2.16 x 10(-2) h(-1) at pH 7 in the Mg(ii)-TAME-ATP ternary system. The Mg(ii) ion and TAME can accelerate the ATP hydrolysis process. A possible mechanism has been proposed that the hydrolysis occurs through an addition-elimination, in which the phosphoramidate intermediate was observed at 3.21 ppm in the (31)P NMR of the ternary system. These results provide further information concerning the effect of the key amino acid residue and metal ions as cofactors of ATPase on ATP synthesis/hydrolysis at the molecular level.  相似文献   

14.
The binding sites of Zn(2+), Cd(2+), and Hg(2+) in complexes with 2-(alpha-hydroxybenzyl)thiamine monophosphate chloride, (LH)(+)Cl(-), have been investigated in the solid state [2-(alpha-hydroxybenzyl)thiamin monophosphate chloride monoprotonated at the phosphate group and protonated at N(1)' is denoted as (LH)(+)Cl(-); therefore, the ligand monoprotonated at the phosphate group and deprotonated at N(1)' is L]. Complexes of formulae MLCl(2), M(LH)Cl(3), and (MCl(4))(2)(-)(LH)(2)(+) (M = Zn(2+), Cd(2+), and Hg(2+)) were isolated in aqueous and methanolic solutions, depending on pH. The crystal structure of the complex of formula HgL(2)Cl(2) was solved, together with that of the free ligand (LH)(+)Cl(-), by X-ray crystallography. HgL(2)Cl(2) crystallizes in C2/c, with a = 32.968(6) ?, b = 7.477(2) ?, c = 21.471(4) ?, beta = 118.19(1) degrees, V = 4665(2) ?(3), and Z = 4. (LH)(+)Cl(-) crystallizes in Cc, with a = 10.951(3) ?, b = 17.579(4) ?, c = 13.373(3) ?, beta = 105.36(2) degrees, V = 2482.4(10) ?(3), and Z = 4. Mercury(II) binds to the N(1') of the pyrimidine ring. Both ligands are in the S conformation [Phi(T) = -98.1(9) degrees and Phi(P) = 176.1(10) degrees for HgL(2)Cl(2) and Phi(T) = 104.1(5) degrees and Phi(P) = 171.9(6) degrees for (LH)(+)Cl(-)]. (31)P and (13)C NMR spectra, together with vibrational spectra (IR/Raman), are used to deduce the binding sites of the metal and the protonation states of the ligand at various pH values. It is found that solid-state (31)P NMR spectroscopy is particularly useful in characterizing these complexes as the (31)P shielding tensors are sensitive to the state of the phosphate group. On the other hand, the (31)P NMR spectra indicate that direct bonding between Zn(2+) and Cd(2+) to the phosphate can occur under certain preparation conditions. Solid-state (13)C NMR and vibrational (IR/Raman) spectroscopic results are also in agreement with the other techniques.  相似文献   

15.
The complexes of adriamycin–d‐(TGATCA)2 and 4′‐epiadriamycin–d‐(CGATCG)2 are studied by one‐ and two‐dimensional 31P nuclear magnetic resonance spectroscopy (NMR) at 500 MHz in the temperature range 275–328 K and as a function of drug to DNA ratio (0.0–2.0). The binding of drug to DNA is clearly evident in 31P? 31P exchange NOESY spectra that shows two sets of resonances in slow chemical exchange. The phosphate resonances at the intercalating steps, T1pG2/C1pG2 and C5pA6/C5pG6, shift downfield up to 1.7 ppm and that at the adjacent step shift downfield up to 0.7 ppm, whereas the central phosphate A3pT4 is relatively unaffected. The variations of chemical shift with drug to DNA ratio and temperature as well as linewidths are different in each of the two complexes. These observations reflect change in population of BI/BII conformation, stretching of backbone torsional angle ζ, and distortions in O? P? O bond angles that occur on binding of drug to DNA. To the best of our knowledge, there are no solution studies on 4′‐epiadriamycin, a better tolerated drug, and binding of daunomycin or its analogue to d‐(TGATCA)2 hexamer sequence. The studies report the use of 31P NMR as a tool to differentiate various complexes. The specific differences may well be the reasons that are responsible for different antitumor action of these drugs due to different binding ability and distortions in DNA. Copyright © 2009 John Wiley & Sons, Ltd.  相似文献   

16.
Nuclear magnetic resonance (NMR) 1H-15N heteronuclear multiple bond correlation (HMBC) experiments on natural abundant adenosine-5'-triphosphate (ATP) showed that zinc(II) induced large chemical shifts (> 10 ppm) for N1 at lower pH (2-5) while for N7 at higher pH (5-7), suggesting that the binding site of Zn2+ in the purine base of ATP is pH dependent. The size effect of zinc(II) in coordination is also discussed.  相似文献   

17.
The interaction between divalent metal ions and nucleic acids is well known, yet knowledge about the strength of binding of labile metal ions at the various sites is very scarce. We have therefore studied the stabilities of complexes formed between the nucleic acid model d(pGpG) and the essential metal ions Mg2+ and Zn2+ as well as with the generally toxic ions Cd2+ and Pb2+ by potentiometric pH titrations; all four ions are of relevance in ribozyme chemistry. A comparison of the present results with earlier data obtained for M(pUpU)- complexes allows the conclusion that phosphate-bound Mg2+ and Cd2+ form macrochelates by interaction with N7, whereas the also phosphate-coordinated Pb2+ forms a 10-membered chelate with the neighboring phosphate diester bridge. Zn2+ forms both types of chelates with formation degrees of about 91% and 2.4% for Zn[d(pGpG)]cl/N7 and Zn[d(pGpG)]-cl/PO, respectively; the open form with Zn2+ bound only to the terminal phosphate group, Zn[d(pGpG)]-op, amounts to about 6.8 %. The various intramolecular equilibria have also been quantified for the other metal ions. Zn2+, Cu2+, and Cd2+ also form macrochelates in the monoprotonated M[H;d(pGpG)] species (the proton being at the terminal phosphate group), that is, the metal ion at N7 interacts to some extent with the P(O)2(OH)- group. Thus, this study demonstrates that the coordinating properties of the various metal ions toward a pGpG unit in a nucleic acid differ: Mg2+, Zn2+, and Cd2+ have a significant tendency to bridge the distance between N7 and the phosphate group of a (d)GMP unit, although to various extents, whereas Pb2+ (and possibly Ca2+) prefer a pure phosphate coordination.  相似文献   

18.
With a view on protein–nucleic acid interactions in the presence of metal ions we studied the “simple” mixed‐ligand model systems containing histamine (Ha), the metal ions Ni2+, Cu2+, or Zn2+ (M2+), and the nucleotides adenosine 5′‐triphosphate (ATP4?) or uridine 5′‐triphosphate (UTP4?), which will both be referred to as nucleoside 5′‐triphosphate (NTP4?) . The stability constants of the ternary M(NTP)(Ha)2? complexes were determined in aqueous solution by potentiometric pH titrations. We show for both ternary‐complex types, M(ATP)(Ha)2? and M(UTP)(Ha)2?, that intramolecular stacking between the nucleobase and the imidazole residue occurs and that the stacking intensity is approximately the same for a given M2+ in both types of complexes: The formation degree of the intramolecular stacks is estimated to be 20 to 50 %. Consequently, in protein–nucleic acid interactions imidazole–nucleobase stacks may well be of relevance. Furthermore, the well‐known formation of macrochelates in binary M2+ complexes of purine nucleotides, that is, the phosphate‐coordinated M2+ interacts with N7, is confirmed for the M(ATP)2? complexes. It is concluded that upon formation of the mixed‐ligand complexes the M2+? N7 bond is broken and the energy needed for this process corresponds to the stability differences determined for the M(UTP)(Ha)2? and M(ATP)(Ha)2? complexes. It is, therefore, possible to calculate from these stability differences of the ternary complexes the formation degrees of the binary macrochelates: The closed forms amount to (65±10) %, (75±8) %, and (31±14) % for Ni(ATP)2?, Cu(ATP)2?, and Zn(ATP)2?, respectively, and these percentages agree excellently with previous results obtained by different methods, confirming thus the internal validity of the data and the arguments used in the evaluation processes. Based on the overall results it is suggested that M(ATP)2? species, when bound to an enzyme, may exist in a closed macrochelated form only, if no enzyme groups coordinate directly to the metal ion.  相似文献   

19.
Phosphofructokinase-2 was purified to homogeneity from chicken livers by homogenization, polyethylene glycol fractionation and column chromatography on DEAE-Sephadex A-50 and Blue-Sepharose 4B. Some properties of the enzyme were as follows: (i) The saturation curve of the enzyme for fructose 6-phosphate showed hyperbolic and the Km of fructose 6-phosphate was affected by inorganic phosphate while Vmax was not; (ii) the binding of ATP to the enzyme was of negative cooperativity with a Hill coefficient of 0.56; (iii) the activity of the enzyme was completely lost in the presence of EDTA. The enzyme was activated by Mg2+ at low concentrations, but inhibited by Mg2+ at high concentrations; (iv) the enzyme was stable below 30 degrees C and easily lost its activity when the temperature was above 40 degrees C; (v) the activity of the enzyme was stable at the range of pH 7-9, increased at pH 9.0-9.5 and decreased when pH was over 9.5; (vi) the enzyme was sensitive to trypsin and ATP protected the enzyme against the proteolysis of trypsin.  相似文献   

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