A molecular dynamics study of epoxidized oligobutadienes with different microstructures

The thermal behavior of epoxidized oligobutadienes with cis and trans microstructures was studied and their comparative analysis was performed by means of molecular dynamics simulation. The extended conformation is retained in the epoxidized trans-isomer, whereas molecules with the cis arrangement of epoxide units acquire the random-coil conformation. The reasons behind the fact that the activity of the cis bond in cis-blocks is lower than in mixed or trans-blocks, although the oligomer with the cis microstructure has a higher reactivity, are discussed.     

Mechanistic study of trans⇆cis isomerization of the substituted azobenzene moiety bound on a liquid‐crystalline polymer

A mechanistic study of the trans?cis isomerization of the azobenzene moiety in a side‐chain liquid‐crystal polymer system was carried out with six liquid‐crystalline polymethacrylates in which different electron‐withdrawing substituents were attached to the para‐positions of the azobenzene chromophores. Compared to the non‐nitro‐substituted azo polymers, the nitro‐substituted azo polymers exhibited two quite different behaviors: an extraordinarily high reaction rate of the thermal cis–trans isomerization and an unexpected composition of cis–trans isomers obtained from the photochemical trans–cis isomerization process. A potential energy profile for the isomerization process was established on basis of the structures of the proposed transition states and was employed to elucidate the reaction mechanism. The results confirmed that the nitro‐substituted azo polymer system proceeded via a rotation mechanism in either direction of the trans?cis isomerization reaction, whereas the non‐nitro‐substituted species were more likely to follow an inversion mechanism. © 2001 John Wiley & Sons, Inc. J Polym Sci Part A: Polym Chem 39: 2296–2307, 2001     

The cis-trans isomerization of 1,2,5,6-tetrasilacycloocta-3,7-dienes: analysis by mechanistic probes and density functional theory

A series of alkyl- and aryl-substituted derivatives of cis,cis-1,2,5,6-tetrasilacycloocta-3,7-diene were prepared. Isomerization of these compounds to the corresponding trans,trans-1,2,5,6-tetrasilacycloocta-3,7-dienes by exposure to Ru and Zr hydride complexes was explored. Experimental probes of the isomerization were consistent with a stepwise mechanism involving metal hydride addition/elimination rather than one involving radical intermediates. Analysis of the low energy conformers of the various cis and trans isomers of 1,1,2,2,5,5,6,6-octamethyl-1,2,5,6-tetrasilacycloocta-3,7-diene using density functional theory suggested the following trend in stability: trans,trans > cis,trans > cis,cis. The calculated trend in stability was consistent with the experimentally observed unidirectional isomerization of the carbon-carbon double bonds from all cis to all trans and supports a cis,trans isomer as a tenable intermediate.     

Living polymerization of aryl substituted acetylenes by MoCl5 and WCl6 based initiators: The ortho phenyl substituent effect

The polymerization of phenylacetylene initiated by MoCl₅ and WCl₆ based initiators was monitored directly in the NMR sample tube and demonstrated the presence of backbiting and intramolecular cyclization reactions. It was shown that the ratio of cis to trans structural units obtained by isomerization prior to double bond formation dictates the degree of backbiting and intramolecular cyclization reactions. This cis–trans ratio determines the length of cis–transoidal sequences present in the polymer backbone which are available for both backbiting and intrachain cyclization reactions. The cyclic trimers obtained in the metathesis polymerization of phenylacetylene are formed only through the cis–cisoidal-induced backbiting and/or intramolecular reactions. The o-trimethylsilylphenylacetylene follows a living mechanism of polymerization. This is due to the fact that the size of the ortho substituent suppresses the cis–transoidal to cis–cisoidal isomerization reactions and therefore eliminates the backbiting reactions. The steric hindrance provided by the size of the ortho substituent also eliminates interchain and intrachain reactions.     

Stimuli‐responsive polymers. VIII. Polyesters and poly(ester amides) containing azobenzene and chiral binaphthylene segments: Highly adaptive materials endowed with light‐, heat‐, and solvent‐regulated optical rotatory power

Azobenzene‐modified polyesters and poly(ester amide)s fitted with chiral, atropisomeric binaphthylene segments were prepared by a series of low‐temperature polycondensation reactions carried out in polar solvent media. When compared with their polyaramide counterparts studied earlier, these materials had significantly improved solubility behaviors and were readily dissolved by a wide range of organic solvents. In solution, each of these constructs underwent photoinduced oscillations in optical rotatory power when subjected to multiple UV‐light/visible‐light illumination cycles that drove trans?cis isomerization reactions along their polymer chains. Light‐regulated chiroptical perturbations were dependent on polymer backbone structures and were further modulated by well‐coordinated temperature fluctuations and by the nature of the solvent medium employed. © 2005 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 44: 207–218, 2006     

Polymerization of Acetylenic Derivatives. XXVI. Polymerization of 9-Ethynylanthracene with Phosphinic,Arsinic, and Stibinic Initiators

9-Ethynylanthracene has been polymerized at 80°C by use of complex phosphinic, arsinic, and stibinic initiators, e. g., NiCl₂′2PPh₃, and the obtained products have been divided into benzene-soluble and benzene-insoluble fractions. It has been shown that the benzene-insoluble polymer has a conjugated polyenic structure while the soluble polymer, with M less than 1500 daltons, contains dihydroanthracene units in the backbone in addition to the conjugated double bonds. It has been found that by using the above initiators the polymers are mainly cis. The cis to trans isomerization has been shown by DTA and DSC measurements to occur between 260 and 290° C.     

Switching of the helical polymer conformation in a solid polymer film

A chiral photochromic polyisocyanate was incorporated into a solid polymer matrix of poly(methyl methacrylate) (PMMA), yielding an isotropic polymer film. Isomerization of the chiral photochromic azo side groups (cis‐trans) triggers a reversible conformational change of the helical polyisocyanate backbone. Thus the chirooptical properties of the film can be switched photochemically. The isomerization of the helix is much slower than the isomerization of the azo side groups. Below T_g , the photochemically modified helix conformation is thus stable, despite thermal relaxation of the azo chromophores.     

Kinetics of the cis,cis to trans,trans isomerization of 1,1,2,2,5,5,6,6-octamethyl-1,2,5,6-tetrasilacycloocta-3,7-diene

The kinetics of the ruthenium-promoted cis,cis to trans,trans isomerization of 1,1,2,2,5,5,6,6-octamethyl-1,2,5,6-tetrasilacycloocta-3,7-diene were investigated. Incubation of a ruthenium alkylidene complex, (Cy(3)P)RuCl(2)(==CHPh)Ru(p-cymene)Cl(2), in CD(2)Cl(2) for 5 days at 40 degrees C afforded a catalytically active ruthenium species that was shown to be responsible for promoting the isomerization. The isomerization was observed to proceed in two steps: (1) conversion of the starting cis,cis isomer to a proposed cis,trans intermediate and (2) subsequent conversion of the intermediate to the product trans,trans isomer. Kinetic studies demonstrated that the two steps are first-order with respect to the concentrations of the cis,cis isomer, the intermediate, and the ruthenium alkylidene complex. The data were further consistent with a mechanism involving bimolecular hydride addition-elimination during the two isomerization steps.     

A fast photoswitch for minimally perturbed peptides: investigation of the trans-->cis photoisomerization of N-methylthioacetamide

Thio amino acids can be integrated into the backbone of peptides without significantly perturbing their structure. In this contribution we use ultrafast infrared and visible spectroscopy as well as state-of-the-art ab initio computations to investigate the photoisomerization of the trans form of N-methylthioacetamide (NMTAA) as a model conformational photoswitch. Following the S2 excitation of trans-NMTAA in water, the return of the molecule into the trans ground state and the formation of the cis isomer is observed on a dual time scale, with a fast component of 8-9 ps and a slow time constant of approximately 250 ps. On both time scales the probability of isomerization to the cis form is found to be 30-40%, independently of excitation wavelength. Ab initio CASPT2//CASSCF photochemical reaction path calculations indicate that, in vacuo, the trans-->cis isomerization event takes place on the S1 and/or T1 triplet potential energy surfaces and is controlled by very small energy barriers, in agreement with the experimentally observed picosecond time scale. Furthermore, the calculations identify one S2/S1 and four nearly isoenergetic S1/S0 conical intersection decay channels. In line with the observed isomerization probability, only one of the S1/S0 conical intersections yields the cis conformation upon S1-->S0 decay. A substantially equivalent excited-state relaxation results from four T1/S0 intersystem crossing points.     

Probing highly efficient photoisomerization of a bridged azobenzene by a combination of CASPT2//CASSCF calculation with semiclassical dynamics simulation

Mechanism of phototriggered isomerization of azobenzene and its derivatives is of broad interest. In this paper, the S(0) and S(1) potential energy surfaces of the ethylene-bridged azobenzene (1) that was recently reported to have highly efficient photoisomerization were determined by ab initio electronic structure calculations at different levels and further investigated by a semiclassical dynamics simulation. Unlike azobenzene, the cis isomer of 1 was found to be more stable than the trans isomer, consistent with the experimental observation. The thermal isomerization between cis and trans isomers proceeds via an inversion mechanism with a high barrier. Interestingly, only one minimum-energy conical intersection was determined between the S(0) and S(1) states (CI) for both cis → trans and trans → cis photoisomerization processes and confirmed to act as the S(1) → S(0) decay funnel. The S(1) state lifetime is ～30 fs for the trans isomer, while that for the cis isomer is much longer, due to a redistribution of the initial excitation energies. The S(1) relaxation dynamics investigated here provides a good account for the higher efficiency observed experimentally for the trans → cis photoisomerization than the reverse process. Once the system decays to the S(0) state via CI, formation of the trans product occurs as the downhill motion on the S(0) surface, while formation of the cis isomer needs to overcome small barriers on the pathways of the azo-moiety isomerization and rotation of the phenyl ring. These features support the larger experimental quantum yield for the cis → trans photoisomerization than the trans → cis process.     

Epoxidized HTPB‐based Polyurethane Membranes for Pervaporation Separation

Polyurethane (PU) solutions were synthesized with hydroxyl‐terminated polybutadiene (HTPB), 4,4′‐dicyclohexylmethane diisocyanate (H₁₂MDI) and 1,4‐butanediol (1,4‐BD). PU membranes were prepared by dry/wet method from PU solutions, while epoxidized membranes were prepared by dipping the dried PU membranes into a mixture of formic acid and hydrogen peroxide for the reaction with C=C double bonds of HTPB soft segments. The extent of epoxidized reaction, which forms epoxide or ether groups, on the PU membranes was quantified by the absorbance ratio of the epoxide group to the butadiene group (A_epoxide/A_C=C ratio). Effect of epoxidized time on the polymer composition, morphology, and polarity of these HTPB‐based PUs was investigated by FTIR‐ATR, DMA and contact angle meter. Both permeabilities and permselectivity of a water/ethanol mixture, which is measured by pervaporation method, were improved through the epoxidation of PU membranes.     

Polyelectrolyte influences on the trans–cis isomerization of sodium m-(4-ethoxyphenylazo)benzene sulfonate

Influences of microenvironment of various polyelectrolytes, i.e., ionene polymers and polyamine sulfones, on the photo- and/or thermal isomerization between the trans and cis forms of sodium m-(4-ethoxyphenylazo)benzene sulfonate (SEPS) were studied. 6,6-Ionene demonstrated larger enhancing effect on the cis–trans thermal isomerization than 3,3-ionene, which indicated that the micropolarity or the pH around the polymer is important. In the Arrhenius plots for both photo- and thermal isomerizations, deviations from the linearity were observed. In the former case, a sharp bend and the negative apparent activation energy were obtained at the high temperature. Furthermore, they were sensitively affected by the polyelectrolytes.     

Kinetics and equilibria of cis/trans isomerization of backbone amide bonds in peptoids

The biological activities of N-substituted glycine oligomers (peptoids) have been the subject of extensive research. As compared to peptides, both the cis and trans conformations of the backbone amide bonds of peptoids can be significantly populated. Thus, peptoids are mixtures of configurational isomers, with the number of isomers increasing by a factor of 2 with each additional monomer residue. Here we report the results of a study of the kinetics and equilibria of cis/trans isomerization of the amide bonds of N-acetylated peptoid monomers, dipeptoids, and tripeptoids by NMR spectroscopy. Resonance intensities indicate the cis conformation of the backbone amide bonds of the peptoids studied is more populated than is generally the case for the analogous secondary amide bond to proline residues in acyclic peptides. Rate constants were measured by inversion-magnetization transfer techniques over a range of temperatures, and activation parameters were derived from the temperature dependence of the rate constants. The rate of cis/trans isomerization by rotation around the amide bonds in the peptoids studied is generally slower than that around amide bonds to proline residues and takes place on the NMR inversion-magnetization transfer time scale only by rotation around the amide bond to the C-terminal peptoid residue.     

Phototriggered fluorescence color changes in azobenzene-functionalized conjugated polymers

We report fluorescence studies of phototriggered changes in spectral position and shape for two azobenzene-functionalized poly(p-phenylenevinylene) derivatives, poly(2-methoxy-5-(4-phenylazophenyl-4'-(1,10-dioxydecyl))-1,4-phenylenevinylene) (MPA-10-PPV) and poly(2-hexyloxy-5-(4-phenylazophenyl-4'-(1,10-dioxydecyl))-1,4-phenylenevinylene) (HPA-10-PPV). Upon trans --> cis azobenzene photoisomerization, small (ca. 1 nm) blue shifts in spectral position are observed for MPA-10-PPV in 100% toluene, a good solvent for this polymer. These shifts are reversed upon visible irradiation and can be cycled many times. To probe the dependence of these shifts on initial polymer conformation, a dichloromethane-methanol cosolvent study was performed in which the solvent quality was decreased incrementally to induce a reduction in polymer coil dimensions. Unirradiated dichloromethane solutions of both MPA-10-PPV and HPA-10-PPV showed a red shift and reduction in quantum yield with increasing methanol concentration as expected based on literature results for other poly(p-phenylenevinylene) derivatives. These changes have been attributed to a dramatic conformational collapse by others and occur for these azo polymers over the 30-60% (v/v) methanol range. While little or no light-induced spectral shifting was observed at low (or=70%) methanol concentrations, significant spectral shifts were observed for both polymers upon azobenzene photoisomerization in solutions with 30-60% methanol, the same range over which the polymer undergoes collapse to a highly coiled state. The largest shifts are visible to the eye, with a 65:35 (v/v) dichloromethane-methanol solution of HPA-10-PPV showing yellow-orange fluorescence when the azobenzenes are trans, green fluorescence when they are cis, and yellow-orange again after the azobenzenes are returned to the trans state. We attribute these color changes to a reversible UV-phototriggered expansion of polymer coil dimensions that occurs as a result of trans --> cis azobenzene side chain isomerization and provide temperature data to support this conclusion.     

Direct calculation of interconversion barriers in dynamic chromatography and electrophoresis: Isomerization of captopril

Dynamic capillary electrophoresis (DCE) and direct calculation of the rate constants of isomerization has been applied to determine the cis-trans isomerization barriers of the angiotensin-converting enzyme inhibitor captopril. The separation of the rotational cis-trans isomeric drug has been performed in an aqueous 50 mM borate buffer at pH 9.3. Interconversion profiles featuring plateau formation, peak-broadening, and peak coalescence were observed. To determine the rate constants of the forward and backward reaction (k(cis-->trans) and k(trans-->cis)) of the isomerization process in dynamic capillary electrophoresis, a novel straightforward calculation method using the experimental parameters plateau height, h(plateau), peak width at half height w(h), the total migration times of the cis-trans isomers t(R) and the electroosmotic break-through time t(0) as well as the peak ratio of the cis-trans isomers is presented for the first time. From temperature dependent measurements the rate constants k(cis-->trans) and k(trans-->cis) and the kinetic activation parameters DeltaG( not equal), DeltaH( not equal), and DeltaS( not equal) of the cis-trans isomerization of captopril were obtained. From the activation parameters the isomerization barriers of captopril at 37 degrees C under basic conditions were calculated to be DeltaG( not equal) (cis-->trans) = 90.3 kJ.mol(-1)and DeltaG( not equal) (trans-->cis) = 90.0 kJ.mol(-1*).     

First-principle computational study on the full conformational space of L-threonine diamide, the energetic stability of cis and trans isomers

First-principle computations were carried out on the conformational space of trans and cis peptide bond isomers of HCO-Thr-NH2. Using the concept of multidimensional conformational analysis (MDCA), geometry optimizations were performed at the B3LYP/6-31G(d) level of theory, and single-point energies as well as thermodynamic functions were calculated at the G3MP2B3 level of theory for the corresponding optimized structures. Two backbone Ramachandran-type potential energy surfaces (PESs) were computed, one each for the cis and trans isomers, keeping the side chain at the fully extended orientation (chi1=chi2=anti). Similarly, two side chain PESs for the cis and trans isomers were generated for the (phi=psi=anti) orientation corresponding to approximately the betaL backbone conformation. Besides correlating the relative Gibbs free energy of the various stable conformations with the number of stabilizing hydrogen bonds, the process of trans-->cis isomerization is discussed in terms of intrinsic stabilities as measured by the computed thermodynamic functions.     

Reversible Transformation between Amorphous and Crystalline States of Unsaturated Polyesters by Cis–Trans Isomerization

An aliphatic polyester has been prepared from ethylene oxide and maleic anhydride that undergoes reversible transformation between amorphous (T_g=18 °C) and crystalline (T_m=124 °C) states through cis–trans isomerization of the C=C bonds in the polymer backbone without any change in either the molecular weight or dispersity of the polymer. A similar transformation was also observed in chiral unsaturated polyesters formed from enantiopure terminal epoxides, such as epichlorohydrin, phenyl glycidyl ether, and (2,3‐epoxypropyl)benzene. These unsaturated polyesters with 100 % E‐configuration in the crystalline state were prepared by quantitative isomerization of their Z‐configuration analogues in the presence of a catalytic amount of diethylamine, while in the presence of benzophenone, irradiation with 365 nm UV light resulted in the transformation of about 30 % trans‐alkene to cis‐maleate form, thereby affording amorphous polyesters.     

Factors affecting conformation in proline-containing peptides

[reaction: see text] NMR was used to study the thermodynamics of the cis --> trans isomerization for prolyl amide bonds in the compounds shown. The magnitude of K(t/c) for C-terminal esters is greater than for the corresponding amides, signifying stronger backbone stereoelectronic effects in esters. Increasing the steric bulk of the N-terminal residue from Ac- to Ac-Gly- favors the trans conformation. Incorporation of a Phe residue N-terminal to Pro, however, shifts the equilibrium in favor of the cis conformation, via a stabilizing aromatic-proline interaction.     

氟代二苯乙烯氨基酸的合成及性能

以4-碘-L-苯丙氨酸为初始原料,经羧基和氨基的保护得到化合物2;化合物2与4-氟苯乙烯进行Heck反应得化合物3;化合物3脱去保护基得氟代二苯乙烯氨基酸(4,47.4%);其结构经1H NMR,13C NMR,IR和MS(ESI-TOF)确证。光学性质研究结果表明:4的激发、发射波长分别为314 nm和355 nm,斯托克斯位移为41 nm,荧光量子产率为0.22。化合物4在甲醇溶液中存在光致顺反异构现象,反式→顺式结构转变速率常数为0.026 min^-1。