有序分子系统的线性与非线性光谱学的简化描述

A simplified formulation for treating the linear and nonlinear spectroscopy of ordered molecular systems is presented,in order to help experimentalists to have an explicit physical picture and quantitative tool on using linear and nonlinear spectroscopy to study molecules in ordered molecular systems. This formulation is expended from our recent quantitative orientational and polarization treatment on second-order nonlinear spectroscopic techniques in interface studies,namely,the Second Harmonic Generation（SHG）and Sum Frequency Generation-Vibrational Polarization Spectroscopy（SFG-VPS）. The key to this formulation is to simplify the effective linear or nonlinear molecular susceptibility and construct the general orientational functional with a clear approach to calculate the orientational and intensity parameters from the experimental parameters,which determines the orientational and polarization behavior of the general orientational functional in a particular experimental configuration. Also discussed are the advantages of coherent spectroscopic techniques over incoherent ones for the accurate measurement of orientation and ordering of ordered molecular system.     

Order parameters and densities in the smectic C, smectic A and nematic phases of a liquid crystal mixture

Measurements of the orientational and translational order parameters for the nematic, smectic A and smectic C phases of a commercial liquid crystal material are reported. The order parameters have been obtained by analysis of the angular distribution of the intensity of X-rays scattered by a sample aligned by a magnetic field. Results are presented as a function of temperature, and it is found that the apparent orientational order parameter in the smectic C phase decreases with decrease in temperature. This is explained using a model of random tilt. The experimental order parameters are compared with those calculated from a mean field model.     

Model-independent structure and resonant X-ray spectra of intermediate smectic phases

It is shown that the orientational structure of intermediate smectic phases can be determined using the symmetry properties of the general free energy with arbitrary orientational coupling between smectic layers, without addressing a particular model. The structure of three- and four-layer intermediate phases, obtained in this way, corresponds to experimental data. The same method enables one to predict the structure of intermediate phases with periodicity of five and six layers, which have not been observed experimentally so far. The resonant X-ray spectra of the five- and six-layer intermediate phases with predicted structure have also been calculated. These spectra are characterized by a number of features which enable one to distinguish five-layer and six-layer intermediate phases from phases with smaller periods.     

基于临近比较的快速拉曼光谱基线校正方法

拉曼光谱成像技术是基于拉曼散射效应所开发的一项现代检测技术,在现代生产、科学研究过程中使用非常广泛。拉曼光谱信号受荧光效应和仪器等方面的影响,往往会产生基线漂移,严重影响对信号特征的进一步提取。因此,必须对拉曼光谱信号进行基线校正。传统的基线校正方法,只针对单一光谱信号,计算量较大,在处理由大量拉曼信号组成的成像数据时,耗时较长且效果不佳。该文提出一种基于临近比较的快速基线校正方法,根据在相同背景下采集的光谱之间的相关性,实现快速基线校正,提高了拉曼成像数据的处理速度。     

Estimating complicated baselines in analytical signals using the iterative training of Bayesian regularized artificial neural networks

The present work deals with the development of a new baseline correction method based on the comparative learning capabilities of artificial neural networks. The developed method uses the Bayes probability theorem for prevention of the occurrence of the over-fitting and finding a generalized baseline. The developed method has been applied on simulated and real metabolomic gas-chromatography (GC) and Raman data sets. The results revealed that the proposed method can be used to handle different types of baselines with cave, convex, curvelinear, triangular and sinusoidal patterns. For further evaluation of the performances of this method, it has been compared with benchmarking baseline correction methods such as corner-cutting (CC), morphological weighted penalized least squares (MPLS), adaptive iteratively-reweighted penalized least squares (airPLS) and iterative polynomial fitting (iPF). In order to compare the methods, the projected difference resolution (PDR) criterion has been calculated for the data before and after the baseline correction procedure. The calculated values of PDR after the baseline correction using iBRANN, airPLS, MPLS, iPF and CC algorithms for the GC metabolomic data were 4.18, 3.64, 3.88, 1.88 and 3.08, respectively. The obtained results in this work demonstrated that the developed iterative Bayesian regularized neural network (iBRANN) method in this work thoroughly detects the baselines and is superior over the CC, MPLS, airPLS and iPF techniques. A graphical user interface has been developed for the suggested algorithm and can be used for easy implementation of the iBRANN algorithm for the correction of different chromatography, NMR and Raman data sets.     

Conformational analysis of oriented non-crystalline polymers using wide angle X-ray scattering

A procedure is presented for obtaining conformational parameters from oriented but non-crystalline polymers. This is achieved by comparison of the experimental wide angle X-ray scattering with that calculated from models but in such a way that foreknowledge of the orientation distribution function is not required. X-ray scattering intensity values for glassy isotactic poly(methylmethacrylate) are analysed by these techniques. The method could be usefully applied to other oriented molecular systems such as liquid crystalline materials.     

Standardless quantitation of thin film specimens

This paper reviews the procedures available for the X-ray microanalysis of specimens in the form of thin self-supporting films without the use of standards. Standardless analysis refers to the procedure in which there is no requirement to prepare standards and then measure them during the course of the current analysis. The factors by which the measured X-ray intensities are converted to compositions are calculated for the elements of interest after the experimental measurements have been completed. These calculations are based on published tabulated data for the physical constants required, or evaluated from theoretical or empirical models. The physical parameters which are required to evaluate the characteristic X-ray production in the specimen are the fluorescence yield, the partition function and the X-ray production cross-section. Most analytical procedures ensure that other variables such as the specimen thickness and electron beam current are not required. Of the parameters mentioned, the first two have been examined and extensively tabulated in the literature. This paper focuses primarily on methods of evaluating the X-ray cross-sections for both the characteristic and bremsstrahlung production.The way in which the physical parameters are incorporated into the standardless quantitation methods for materials samples is described. A new standardless version of the continuum normalisation method for quantitative analysis for samples with organic matrices is introduced. Some techniques for making corrections for absorption to the observed intensities are discussed, and formulae are given for X-ray absorption and fluorescence which it may be necessary to use with thicker specimens.     

Orientational order of a liquid crystal with three chiral centers by a combined 13C NMR and DFT approach

In this work, the liquid crystal (S)-2-methylbutyl-[4'-(4' '-heptyloxyphenyl)-benzoyl-4-oxy-(S)-2-((S)-2')-benzoyl)-propionyl)]-propionate (ZLL 7/*) was investigated by means of 13C NMR spectroscopy. This compound has a very peculiar mesomorphic behavior, showing the following phases: paraelectric SmA, ferroelectric SmC*, antiferroelectric SmC*A, re-entrant ferroelectric SmC*re, and ferroelectric hexatic Sm*HEX. The structural and orientational ordering properties of ZLL 7/* have been determined by exploiting the nuclear chemical shielding properties of 13C. To this aim, solid-state NMR techniques such as CP, SPINAL-64, and SUPER have been used in combination with DFT calculations. The agreement between experimental and in vacuo DFT shielding parameters appears to be satisfactory. The orientational order parameters obtained from the 13C shielding analysis have been discussed, taking into account different data analysis approaches and comparing them to those previously obtained from an independent 2H NMR study.     

Molecular dynamics simulations on the adsorption of 4-n-octyl-4′-cyanobiphenyl (8CB) at the air/water interface

The influence of surface coverage to the structural properties of 4-n-octyl-4´-cyanobiphenyl (8CB) monolayer at the air/water interface was studied by full atomistic molecular dynamics simulations. These properties include density profiles, interface thickness, monolayer width, orientational order parameters, and atom-pair radial distribution functions. The calculated tilt angles of the cyanobiphenyl and alkyl parts are in fairly good agreement with the experiments. The simulation results exhibit the general trends in the previous experimental and simulation data.     

Sas_analyzer software for small-angle X-ray scattering data treatment

New approaches to the analysis of small-angle X-ray scattering data from nanoscale systems based on the optimization and direct multiple shooting methods are presented. A program is developed, which bears on these new approaches and allows a user to model small-angle X-ray diffraction data, introduce collimation corrections, and analyze dispersions in the samples. The program results for a number of typical nanosized systems (sols, catalysts) are reported and the comparison with currently available programs for small-angle data processing is presented.     

A PC compatible computer program for the calculation of equilibrium constants by the simultaneous processing of different sets of experimental results

A new PC compatible computer program SIRKO for the calculation of the equilibrium constants by means of the simultaneous processing of different experimental data from various techniques is given. This program is characterized by the application of a universal response function, which allows many different physicochemical methods to be used to study equilibria without any modification of the program. It is also possible to refine additional parameters (electrode parameters, initial analytic concentration, etc). We have used the least-squares method with the weightings calculated according to the error propagation rule taking into account all independent variables. To minimize the function, singular Jacobian decomposition is applied. This allows control of its range and forms a set of parameters, determined from the experimental data.     

Use of portable X-ray fluorescence instrument for bulk alloy analysis on low corroded indoor bronzes

One of the most often used non-destructive methods for elemental analysis when performing field measurements on bronze sculptures is X-ray fluorescence (XRF) analysis based on portable instrumentation. However, when performing routine in-situ XRF analysis on corroded objects obtained results are sometimes considerably influenced by the corrosion surface products.In this work the suitability of portable XRF for bulk analysis of low corroded bronzes, which were initially precisely characterized using sophisticated and reliable laboratory methods, was investigated and some improvements in measuring technique and data processing were given. Artificially corroded bronze samples were analyzed by a portable XRF instrument using the same methodology and procedures as when performing in-situ analysis on real objects. The samples were first investigated using sophisticated complementary laboratory techniques: Scanning Electron Microscopy, Proton-Induced X-ray Emission Spectroscopy and Rutherford Backscattering Spectrometry, in order to gain precise information on the formation of the corrosion product layers and in-depth elemental profile of corrosion layers for different aging parameters. It has been shown that for corrosion layers of up to ca. 25 μm a portable XRF can yield very accurate quantification results.     

Analysis of small-angle scattering data from colloids and polymer solutions: modeling and least-squares fitting

Analysis and modeling of small-angle scattering data from systems consisting of colloidal particles or polymers in solution are discussed. The analysis requires application of least-squares methods, and the basic principles of linear and non-linear leastsquares methods are summarized with emphasis on applications in the analysis of small-angle scattering data. These include indirect Fourier transformation, square-root deconvolution, size distribution determinations, and modeling. The inclusion of corrections for instrumental smearing effects is also discussed. The most common analytical expressions for model form factors and structure factors are summarized. An example of analysis of small-angle neutron and X-ray scattering data from block copolymer micelles is given.     

The integration of structure determination by computation,electron diffraction and microwave spectroscopy

The history of the interaction between experimental structure determinations by microwave spectroscopy and by gas phase electron diffraction is briefly reviewed in terms of three eras: (1) competition and antagonism, (2) comparison and correction, and (3) integration of analysis. A similar progression is noted for the relation between experimental and theoretical methods for studying molecular structure, with the present time straddling ages (2) and (3). Examples are given from a variety of studies involving various degrees of methodological interaction. The true integration of experimental and computational structural studies is still in its infancy with the primary illustrations involving the evaluation of theoretical structural offset values from experimental evidence, the transfer of theoretically determined parameters into the fitting of experimental data, and the current development of methods for utilizing vibrational information obtained from the combined analysis of computed theoretical and experimental infrared data in the further analysis of experimental diffraction and microwave information.     

化学计量学方法在脂质组学数据解析中的应用

脂质组学是依赖于分析技术而发展的一门新兴学科,用于全面表征与基因调控、蛋白表达、脂质代谢密切相关的脂质分子,揭示脂质在各种生命活动中的作用机制和代谢途径网络。随着质谱及其联用技术进一步发展和完善,脂质组学逐渐向快速、自动化和高通量的方向发展,而大规模的脂质组数据分析已成为脂质组学研究领域的一大难点。化学计量学主要应用于脂质组学中的基线校正和背景扣除、信号峰识别、同位素分布解析、统计分析等过程,因此,基于化学计量学方法的脂质组学数据自动化解析策略成为研究者关心的热点。该文对近年来化学计量学在脂质组学数据解析中的应用进行了综述,并对基于化学计量学的脂质组学数据解析的未来发展进行了展望。     

Correlation between Small-Angle X-ray Scattering spectra and apparent diffusion coefficients in the study of structure and interaction of sodium taurodeoxycholate micelles

Small-Angle X-ray Scattering (SAXS) and Dynamic Light Scattering (DLS) measurements were carried out on aqueous micellar solutions of the ionic biological detergent sodium taurodeoxycholate (NaTDC). Apparent diffusion coefficients (D(app)) and SAXS spectra of NaTDC 0.1 M solutions at different ionic strengths (0.1-0.3 M NaCl) were reported. A comparative analysis of SAXS spectra and D(app) data was performed to infer information on particle structure and interaction potential. Uniform particles with a spherical, an oblate, and a prolate symmetry were used to model the micelles in the data interpretation. A hard-core interaction shell of suitable thickness and a screened Coulomb potential of the electric double layer (EDL potential) were alternatively used to represent the long-range repulsive tail of the interaction potential. The Percus Yevick and the Rescaled Mean Spherical Approximation were applied. To compare the data of the two techniques, for each sample, a D(app) was calculated from the SAXS best-fitting geometrical parameters and interparticle structure factor of the micelles. Hence, a fitting procedure involving both the scattering and D(app) data was performed. The interpretation of SAXS spectra does not allow the discrimination between the oblate and the prolate symmetries of the aggregates. On the other hand, the comparison of calculated and experimental D(app) values indicates that the prolate ellipsoid is better suited to represent the micelle shape. Moreover, the agreement between calculated and experimental D(app) values is sensitively better at the lowest NaCl concentration when the EDL potential is used. A rodlike micellar growth and a progressive screening of the electrostatic interactions is testified by the trends of best-fitting parameters as a function of the added electrolyte.     

DETERMINATION OF DEGREE OF CRYSTALLINITY OF NYLON 1212 BY WIDE-ANGLE X-RAY DIFFRACTION

Based on the X-ray scattering intensity theory and using the approximate expression for the atomic scattering factor, the correction factors for three crystalline peaks and an amorphous peak of Nylon 1212 were calculated and the formula of degree of crystallinity of Nylon 1212 was derived by a graphic multipeak resolution method. The degree of crystallinity calculated from the WAXD method is compatible with those obtained by density and calorimetry methods.     

Signal processing and detection limits for graphite furnace atomic absorption with Zeeman background correction

The signal handling requirements for graphite furnace atomic absorption are much more demanding than those for flame atomic absorption. Graphite furnace signals change rapidly, background levels are higher, and signal interpretation needs are more extensive.We have identified a number of signal generation and processing factors that are important for success in graphite furnace analyses. These include: use of the transverse, a.c. Zeeman technique with the magnet on the analyte for background correction; production of a series of signal integrals at line frequency to accurately represent the shape of the furnace peak; use of interpolation techniques to better correct for rapidly changing background levels; use of integrated peak absorbance (A.s) signals rather than peak height absorbance for quantitative measurements; use of baseline correction to improve the accuracy of integrated peak absorbance signals; and use of graphical techniques to facilitate data interpretation and methods development.Examples are presented that illustrate the contribution of these factors to precision and detection limit performance. It is possible to improve detection limits over those previously reported by choosing appropriate signal handling parameters.