Synthesis and reactivity of alkoxy(trimethylsiloxy)phosphines and their derivatives

Convenient procedures for the synthesis of new alkoxy(trimethylsiloxy)phosphines and their derivatives starting from the available alkyl hypophosphites and N‐trimethylsilyl succinimide are proposed. Some properties of these new phosphines such as nucleophilic substitution of the trimethylsiloxy group at trivalent phosphorus, the Arbuzov reaction, and addition of PH and POSi fragments to multiple carbon–carbon bonds are presented. © 2011 Wiley Periodicals, Inc. Heteroatom Chem 23:138–145, 2012; View this article online at wileyonlinelibrary.com . DOI 10.1002/hc.20762     

Synthesis of stable azide and alkyne functionalized phosphoramidite nucleosides

The use of CuAAC chemistry to crosslink and stabilize oligonucleotides has been limited by the incompatibility of azides with the phosphoramidites used in automated oligonucleotide synthesis. Herein we report optimized reaction conditions to synthesize azide derivatives of thymidine and cytidine phosphoramidites. Investigation of the stability of the novel phosphoramidites using ³¹P NMR at room temperature showed less than 10% degradation after 6?h. The azide modified thymidine was successfully utilized as an internal modifier in the standard phosphoramidite synthesis of a DNA sequence. The synthesized azide and alkyne derivatives of pyrimidines will allow efficient incorporation of azide and alkyne click pairs into nucleic acids, thus widening the applicability of click chemistry in investigating the chemistry of nucleic acids.     

Ylide‐Functionalized Phosphines: Strong Donor Ligands for Homogeneous Catalysis

Phosphines are important ligands in homogenous catalysis and have been crucial for many advances, such as in cross‐coupling, hydrofunctionalization, or hydrogenation reactions. Herein we report the synthesis and application of a novel class of phosphines bearing ylide substituents. These phosphines are easily accessible via different synthetic routes from commercially available starting materials. Owing to the extra donation from the ylide group to the phosphorus center the ligands are unusually electron‐rich and can thus function as strong electron donors. The donor capacity surpasses that of commonly used phosphines and carbenes and can easily be tuned by changing the substitution pattern at the ylidic carbon atom. The huge potential of ylide‐functionalized phosphines in catalysis is demonstrated by their use in gold catalysis. Excellent performance at low catalyst loadings under mild reaction conditions is thus seen in different types of transformations.     

Phosphoramidite building blocks for efficient incorporation of 2′-O-aminoethoxy(and propoxy)methyl nucleosides into oligonucleotides

A simple and efficient method for the preparation of eight phosphoramidite building blocks for incorporation of 2′-O-(2-aminoethoxymethyl)ribonucleosides and 2′-O-(3-aminopropoxymethyl)ribonucleosides into synthetic oligonucleotides has been developed. The synthetic routes are maximally convergent and provide sufficient amounts of phosphoramidites for several solid-phase synthesis coupling reactions. Using acyclic derivatives 17a,b the overall yields of phosphoramidites 2 and 3 were increased up to 50% for pyrimidine nucleosides and up to 30% for purine derivatives with substantial decrease of total reaction steps. The 2′-O-substituent was found to be stable during oligonucleotide synthesis. The resulting oligonucleotides are of particular interest for post-synthetic functionalization and conjugation.     

烷基修饰寡聚脱氧核苷酸磷酸残基的化学合成及稳定性研究

分别采用格氏试剂和三氯化磷三步取代法合成了4个新的烷基修饰磷酸残基的亚磷酸酰胺单体, 其结构经1H NMR和31P NMR表征. 利用这些单体合成模型序列5'-dTTTx TT-3', 考察了单体及寡聚核苷酸序列在DNA/RNA合成条件下的稳定性, 提出了固相合成含有烷基修饰磷酸残基的寡聚核苷酸序列裂解及脱保护条件.     

C‐phosphorylation of 2,5‐dimethyl‐N‐arylpyrroles

C‐Phosphorylation of 2,5‐dimethylpyrroles with phosphorus (III) halides has been studied. Synthetic methods have been elaborated that provide an access to 3‐phosphorylated 2,5‐dimethylpyrroles, including pyrrole‐substituted halogeno and dihalogeno phosphines; on this basis, a variety of trivalent and pentavalent phosphorus derivatives has been obtained. Ortho‐diphosphorylated 2,5‐dimethyl‐N‐arylpyrrole derivatives have been synthesized for the first time. © 1999 John Wiley & Sons, Inc. Heteroatom Chem 10:223–230, 1999     

Syntheses based on elemental phosphorus,sulfur, and their derivatives

This review summarizes the data on the synthesis of various phosphorus-and-sulfurcontaining organic compounds based on the reactions of elemental phosphorus and sulfur and their derivatives (various types of esters of trivalent phosphorus thioacids) with a variety of organic compounds. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 10, pp. 1706–1711, October, 1993.     

Stereoselective reactions of trivalent phosphorus compounds

The data on stereoselective reactions of achiral compounds of trivalent phosphorus with chiral nucleophiles (derivatives of secondary alcohols, amines, and amino acids) are analyzed and discussed. In certain cases, these reactions enable preparation of optically active aminophosphines and phosphinites, precursors in the synthesis of chiral organophosphorus compounds and phosphine ligands. The reactions are suitable for elucidation of mechanism and stereochemistry of nucleophilic substitution at trivalent phosphorus atom.     

Sterically Controlled Late-Stage Functionalization of Bulky Phosphines

The fine-tuning of metal-phosphine-catalyzed reactions relies largely on accessing ever more precisely tuned phosphine ligands by de-novo synthesis. Late-stage C−H functionalization and diversification of commercial phosphines offers rapid access to entire libraries of derivatives based on privileged scaffolds. But existing routes, relying on phosphorus-directed transformations, only yield functionalization of C −H bonds in a specific position relative to phosphorus. In contrast to phosphorus-directed strategies, herein we disclose an orthogonal functionalization strategy capable of introducing a range of substituents into previously inaccessible positions on arylphosphines. The strongly coordinating phosphine group acts solely as a bystander in the sterically controlled borylation of bulky phosphines, and the resulting borylated phosphines serve as the supporting ligands for palladium during diversification through phosphine self-assisted Suzuki-Miyaura reactions.     

Synthesis of amine- and thiol-modified nucleoside phosphoramidites for site-specific introduction of biophysical probes into RNA

For studies of RNA structure, folding, and catalysis, site-specific modifications are typically introduced by solid-phase synthesis of RNA oligonucleotides using nucleoside phosphoramidites. Here, we report the preparation of two complete series of RNA nucleoside phosphoramidites; each has an appropriately protected amine or thiol functional group. The first series includes each of the four common RNA nucleotides, U, C, A, and G, with a 2'-(2-aminoethoxy)-2'-deoxy substitution (i.e., a primary amino group tethered to the 2'-oxygen by a two-carbon linker). The second series encompasses the four common RNA nucleotides, each with the analogous 2'-(2-mercaptoethoxy)-2'-deoxy substitution (i.e., a tethered 2'-thiol). The amines are useful for acylation and reductive amination reactions, and the thiols participate in displacement and oxidative cross-linking reactions, among other likely applications. The new phosphoramidites will be particularly valuable for enabling site-specific introduction of biophysical probes and constraints into RNA.     

Reactions of coordinated hydroxymethylphosphines with NH-functional amines: the phosphorus lone pair is crucial for the phosphorus Mannich reaction

Non-coordinated hydroxymethylphosphines react readily with primary and secondary amines by the phosphorus Mannich reaction. To determine if this reactivity can be used to synthesize phosphine macrocycles, trans-Fe(DHMPE)(2)Cl(2) (DHMPE = 1,2-bis(dihydroxymethylphosphino)ethane) was prepared and reacted with various amines. However, no phosphorus Mannich reactivity was observed. In order to understand why no reactions occurred, the Mannich reactivity of the borane-coordinated hydroxymethylphosphines DHMPE·2BH(3) and Ph(2)PCH(2)OH·BH(3) was investigated. These borane-coordinated phosphines also did not undergo the phosphorus Mannich reaction. These results suggest that the lone pair of electrons on the phosphorus atom is essential for the phosphorus Mannich reaction to occur, and therefore it is not possible to use this reaction in a templated synthesis of phosphine macrocycles. It is speculated that the mechanism of the phosphorus Mannich reaction may involve a methylenephosphonium intermediate, analogous to an iminium in the standard Mannich reaction. X-ray crystal structures of trans-Fe(DHMPE)(2)Cl(2) and DHMPE·2BH(3) are also presented. Both crystal structures display an extended hydrogen-bonding network in the solid state.     

Differential-thermoanalytische Untersuchung von einigen Phosphororganischen Verbindungen

The thermal transitions of phosphines, phosphonium salts and esters of phosphorus acids, as well as some reactions of different phosphorus compounds, were studied by DTA.

1. DTA data have been considered for various types of reactions: 1. A→B; 2. A→B+C
2. DTA of reactive mixtures: 1. A+B→C; 2. A+B→C+D

Examples of the use of DTA were shown for studying the processes of isomerization, decomposition, and different regroup reactions of addition, combination, exchange and disintegration. The simple method of DTA allows one to find the optimum conditions of the reactions and to establish their reaction paths.     

Functionalized phospholanes and phosphorinanes from 1,4- and 1,5-diketones

Phosphorylation reactions of 1,4-diketones, 1,5-diketones, and methylene-1,5-diketones with bidentate phosphorus nucleophiles (phosphines and phosphonous acid derivatives) represent convenient methods of synthesis of saturated functionalized phospholanes and phosphorinanes. © 1997 John Wiley & Sons, Inc. Heteroatom Chem 8 : 217–223, 1997.     

An expedient biocatalytic procedure for abasic site precursors useful in oligonucleotide synthesis

Preparation of abasic site precursors through a divergent chemoenzymatic synthesis has been accomplished. Several biocatalysts and acylating agents were studied furnishing a practical and scalable green method useful for industrial applications. Highly regioselective acylation and deacylation reactions with 1,2-dideoxy-D-ribose are described resulting in excellent yield. A fast, atom-efficient and convenient synthesis of 3-, and 5-O-DMTr-1,2-dideoxyribose 17 and 19 has been achieved. These compounds are useful precursors for the preparation of phosphoramidites required for the assembly of oligonucleotides containing the tetrahydrofuran abasic lesions.     

New Types of Functionally Substituted Methylphosphonites and Their Derivatives

Abstract

Organophosphorus compounds containing a functional group in the a-position of the alkyl radical are of great interest in both theoretical fundamental investigations and for practical applications. Functionally substituted methyl-phosphonites and their derivatives, belonging to this broad class of organophosphorus compounds, are convenient objects for investigating mutual effects of trivalent phosphorus and a heteroatom, or functional groups attached to it in the a-position. They have also become key substances in obtaining new organophosphorus compounds. Functionally sub-stituted compounds of tetracoordinated phosphorus have been intensively investigated in recent years; rather convenient methods of synthesis of these compounds have been proposed and their properties have been studied in detail¹. However, the corresponding compounds of tricoordinated phosphorus are not available or difficult to obtain. Recently we re-ported on the properties of halogen-substituted methylphos-phines and their derivatives². The present paper is devoted to the synthesis and investigation of the reactivity of alkoxy-, dialkylamino- and carbonyl substituted methylphos-phonites and their derivatives. In synthesis of alkoxymeth-ylphosphonites and their analogs we were the first to use labile alkoxymethylmagnesium chlorides in the reactions with tricoordinated phosphorus acid chlorides³. Previously unknown dialkoxymethylphosphonites and their analogs were obtained from hypophosphorous acid and trialkylorthofor-mates. The process of esterification and dialkoxymethylat-ion of hypophosphorous acid, being dependent on a catalyst, proceeds in different ways and results in the formation of dialkoxymethylphosphonite structures     

REACTIONS OF DERIVATIVES OF PHOSPHORUS ACIDS WITH CARBONYL COMPOUNDS ACTIVATED BY ELECTRONEGATIVE GROUPS

Abstract

The Arbuzov reaction results in the synthesis of various phosphonic esters and is of great importance for the further development of the chemistry of organophosphorus compounds. Investigations of recent decades have shown that, besides halogen-containing organic compounds, different types of organic compounds of the electrophilic type which do not contain halogen atoms are capable of entering this reaction. Reactions with carbonyl compounds are especially interesting. This report presents the results of reactions of derivatives of tricoordinated phosphorus (trialkyl phosphites, amidophosphites, ester anhydrides, isocyanate phosphites) with carbonyl compounds. Special emphasis was placed on studying the reactions with carbonyl compounds activated by some electronegative groups. The regularities and mechanisms of these reactions were investigated depending on the structure of the carbonyl compounds, the derivatives of tricoordinated phosphorus and the reaction conditions.     

Thermolytic 4-methylthio-1-butyl group for phosphate/thiophosphate protection in solid-phase synthesis of DNA oligonucleotides

The thermolabile 4-methylthio-1-butyl phosphate/thiophosphate protecting group for DNA oligonucleotides has been investigated for its potential application to a "heat-driven" process for either oligonucleotide synthesis on diagnostic microarrays or, oppositely, to the large-scale preparation of therapeutic oligonucleotides. The preparation of phosphoramidites 10a-d is straightforward, and the incorporation of these amidites into oligonucleotides via solid-phase techniques proceeds as efficiently as that achieved with 2-cyanoethyl deoxyribonucleoside phosphoramidites. The versatility of the 4-methylthio-1-butyl phosphate/thiophosphate protecting group is exemplified by its facile removal from oligonucleotides upon heating for 30 min at 55 degrees C in an aqueous buffer under neutral conditions or within 2 h at 55 degrees C in concentrated NH(4)OH. The deprotection reaction occurs through an intramolecular cyclodeesterification mechanism leading to the formation of sulfonium salt 18. When mixed with deoxyribonucleosides and N-protected 2'-deoxyribonucleosides or with a model phosphorothioate diester under conditions approximating those of large-scale (>50 mmol) oligonucleotide deprotection reactions, the salt 18 did not significantly alter DNA nucleobases or desulfurize the phosphorothioate diester model to an appreciable extent.     

Electrochemical phosphorylation of unsaturated hydrocarbons

It is shown that phosphine derivatives, first of all, primary phosphines, can be produced on the basis of reaction of cathodic reduction of white phosphorus in the aqueous media under mild conditions.     

Oligosilane‐ and Oligosiloxane‐bridged Phosphines – Synthesis,Structures, and Metalation

The range of molecular silicon phosphorus compounds has been extended by some new species containing oligosilane ((R₂Si)_n; n ≥ 2) or oligosiloxane ((R₂SiO)_mSiR₂; m ≥ 1) fragments bound to phosphorus atoms. Primary and secondary compounds of these types allow for the synthesis of metal derivatives. Such metalated species usually form oligomers and exhibit a versatile structural chemistry with cyclic, polycyclic, and cage‐like patterns. The main results obtained in the field of oligosilane‐ and oligosiloxane‐bridged phosphines will be presented below and the structures of the metal derivatives will be discussed. Moreover, the synthesis of an inorganic ligand on the basis of siloxane‐bridged phosphines will be presented. This compound opens up a new chapter in host‐guest chemistry.     

Chromophoric and Dendritic Phosphoramidites Enable Construction of Functional Dendrimers with Exceptional Brightness and Water Solubility

The fluorescence brightness of a molecular probe determines whether it can be effectively measured and its water solubility dictates if it can be applied in real‐world biological systems. However, molecules brighter than the most efficient fluorescent dyes or particles brighter than quantum dots are hard to come by, especially when they must also be soluble in water. In this report, chromophoric phosphoramidites are used in a solid‐state synthesis to construct functional dendrimers. When highly twisted chromophores are chosen and the proper spacers and dendrons are introduced, the resultant dendrimers emit exceptionally bright fluorescence. Chromophores, spacers, and dendrons are stitched together by efficient phosphoramidite reagents, which afford high‐yield water‐soluble phosphodiester linkages after deprotection. The resulting water‐soluble dendrimers are exceptionally bright.