蛋白质二级结构预测的人工神经网络方法研究

本文比较了五种神经网络方法预测蛋白质二级结构的准确率,并做出初步评价。五种神经网络分别是:误差反传前向网络(BP),径向基函数网络(RBF),广义回归神经网络(GRNN),串并联叠层网络(CF),Elman网络(ELM)。结果显示:GRNN的预测准确率达85.7%,优于其它网络。本文还讨论了训练集样本数及参数的优化对GRNN预测准确率的影响。     

Synthesis of carbon nanotube‐based nanocomposite and application for wastewater treatment by ultrasonicated adsorption process

The sorption of methylene blue (MB) and basic yellow 28 (BY28) dyes in water on Ag@ZnO/MWCNT (Ag‐doped ZnO loaded on multiwall carbon nanotubes) nanocomposite is investigated in a batch process, optimizing starting initial dye concentration, sonication time and adsorbent mass. Isotherms and kinetic behaviours of MB and BY28 adsorption onto Ag@ZnO/MWCNT were explained by extended Freundlich and pseudo‐second‐order kinetic models. Ag@ZnO/MWCNT was synthesized and characterized using X‐ray diffraction, energy‐dispersive X‐ray spectroscopy, field emission scanning electron microscopy and Brunauer–Emmett–Teller analysis. According to the experimental data, adaptive neuro‐fuzzy inference system (ANFIS), generalized regression neural network (GRNN), backpropagation neural network (BPNN), radial basic function neural network (RBFNN) and response surface methodology (RSM) were developed, and applied to forecast the removal performance of the sorbent. The influence of process variables (i.e. sonication time, initial dye concentration, adsorbent mass) on the removal of MB and BY28 was considered by central composite rotatable design of RSM, GRNN, ANFIS, BPNN and RBFNN. The performances of the developed ANFIS, GRNN, BPNN and RBFNN models were compared with RSM mathematical models in terms of the root mean square error, coefficient of determination, absolute average deviation and mean absolute error. The coefficients of determination calculated from the validation data for ANFIS, GRNN, BPNN, RBFNN and RSM models were 0.9999, 0.9997, 0.9883, 0.9898 and 0.9608 for MB and 0.9997, 0.9990, 0.9859, 0.9895 and 0.9593 for BY28 dye, respectively. The ANFIS model was found to be more precise compared to the other models. However, the GRNN method is much easier than the ANFIS method and needs less time for analysis. So, it has potential in chemometrics and it is feasible that the GRNN algorithm could be applied to model real systems. The monolayer adsorption capacity of MB and BY28 was 292.20 and 287.02 mg g^?1, respectively.     

Comparative study to predict toxic modes of action of phenols from molecular structures

Quantitative structure–activity relationship models for the prediction of mode of toxic action (MOA) of 221 phenols to the ciliated protozoan Tetrahymena pyriformis using atom-based quadratic indices are reported. The phenols represent a variety of MOAs including polar narcotics, weak acid respiratory uncouplers, pro-electrophiles and soft electrophiles. Linear discriminant analysis (LDA), and four machine learning techniques (ML), namely k-nearest neighbours (k-NN), support vector machine (SVM), classification trees (CTs) and artificial neural networks (ANNs), have been used to develop several models with higher accuracies and predictive capabilities for distinguishing between four MOAs. Most of them showed global accuracy of over 90%, and false alarm rate values were below 2.9% for the training set. Cross-validation, complementary subsets and external test set were performed, with good behaviour in all cases. Our models compare favourably with other previously published models, and in general the models obtained with ML techniques show better results than those developed with linear techniques. We developed unsupervised and supervised consensus, and these results were better than our ML models, the results of rule-based approach and other ensemble models previously published. This investigation highlights the merits of ML-based techniques as an alternative to other more traditional methods for modelling MOA.