DFT Study of Solvent Effects for Some Organic Molecules Using a Polarizable Continuum Model

Forty ionic molecules are studied by DFT (B3LYP, B3P86), MP4 with different basis sets using the PCM/UAHF model within the self-consistent reaction-field method to assess solvent effects. For these molecules, the solvation free energies (ΔG _sol) in water and the dipole moments in vacuoas well as in water are obtained. By comparing the calculated values of ΔG _sol with experimental values and molecular simulation results, it is found that the ΔG _sol values generated by the DFT method are in better agreement with experimental values. Moreover, especially for the B3LYP/6-31+G_∗ level, the results of both ΔG _sol and dipole moments are more accurate considering the lower computational cost. It can be noted that the dipole moments of solutes in water show some increase relative to those in vacuo.     

锶助剂对铂锡催化剂正丁烷脱氢催化性能的影响

负载型ＰｔＳｎ／Ａｌ２Ｏ３催化剂已广泛地应用于工业生产中［１］，人们正尝试着添加不同助剂以改变催化剂的反应性能。文献的工作主要集中在研究铂锡催化剂中添加助剂对载体表面酸性的调变作用。在烃类重整催化剂中，加入氟、氯等元素可增强载体的表面酸性［２］，提高...     

Ion/Molekülreaktionen negativ geladener KomplexeSchiffscher Basen mit potentiellen Ligandmolekülen in der Gasphase

Ion/molecule reactions of four coordinateSchiff base complexes under negative ion chemical ionization conditions have been studied. The complex metal ions consisted of cobalt(II), nickel(II) and copper(II).Schiff base ligands with different donor strengths were employed. The gas mixtures used contained 90% methane and 10% of the gases O₂, NO or CO. The spectra showed intense molecular negative ions, formed by secondary electron capture processes. Secondary ions were formed via ion/molecule reactions between the parent molecular negative ion and added gas molecules to giveMLX ^–,X=O₂, NO, CO;L=Schiff base ligand,M=Co(II) or Ni(II). Consistent with former investigations, secondary ion formation was not found for the copper compounds. Influence of the central metal ion as well as the ligand donor strength on the ion/molecule reactions are discussed. From the results obtained a mechanism of the secondary ion formation is suggested.

     

The influence of hydrophobic amino acid side groups on the acidity of the aromatic imidazole ring of histidine: A theoretical study

In this study we have calculated the acidity constant (pKa) of imidazole ring in Histidine‐Hydrophobic amino acid dipeptides using the quantum chemistry and continuum solvation methods. Density functional theory calculations with the large basis sets are used to determine the Gibbs free energy of deprotonate in the gas and liquid phases. Based on our results ΔG_S values are located between ?69.38 and ?18.82 kcal mol^?1 which are related to His⁺–Gly and His forms, respectively. pKa of the dipeptides in the aqueous phase was obtained from the calculated gas‐phase and solvation free energies through a thermodynamic cycle and the solvation model chemistry of Martin Karplus et al. Solvation effects are treated using a self‐consistent reaction field formalism involving polarized continuum models. According to our calculations pKa values are between 5.50 and 8.19 that are belong to His⁺–ILe and His⁺–Ala forms, respectively. Natural bond orbital analysis of dipeptides reveals that the electron delocalization in imidazole ring is the most effective factor in determination of acidity order for these compounds. Structural analysis confirmed that the orientation of carbonyl group with respect to imidazole ring is an effective factor in imidazole ring stability. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

Solvation of Na+ in N,N-dimethylformamide + methanol solutions. A nuclear magnetic relaxation study using dynamic solvent isotope effects

Inter- and intramolecular nuclear magnetic quadrupole relaxation measurements have been used to study the system methanol (CH₃OH)+ N,N-dimethylformamide (DMF)+NaI at 25°C. The dynamic behavior of the solvent molecules was investigated, throughout the composition range of the binary mixtures, by means of ¹⁴ N relaxation of DMF and ² H of methanol-d ₁ (CH ₃ OD). The intermolecular relaxation of ²³ Na⁺ in pure DMF was used to obtain information about the symmetry of the solvent electric dipole arrangement in the solvation sphere of the ion. The investigation of preferential solvation around Na⁺ in the binary mixtures was carried out by means of ²³ Na⁺ relaxation measurements using, for the first time, both the CH ₃ OH/CD ₃ OD and the DMF/DMF-d ₇ dynamic isotope effect. The results show that, throughout the composition range, there is preferential solvation by DMF. Furthermore, the use of the isotope effects of both components allowed for the first time a basic check of the reliability of the method since we obtained two independent sets of data for the composition of the Na⁺ solvation shell in the mixtures. The consistency of the two separate data sets demonstrates that the application of the dynamic isotope effect represents a powerful tool in preferential solvation studies.     

Ionization of aqueous toluic acids: Conductance and thermodynamics

Conductivities of aqueous solutions ofortho-, meta-, andpara-toluic acids have been measured for the concentration range 0.1–2 millimolar and at 5° intervals from 5 to 100°C. At each temperature pK _a(m) andA ₀ have been calculated using the paired ion model recently described by Fuoss. Thermodynamic parameters have been calculated for the ionization of each acid, and Walden products for the anions. Results are discussed in terms of contributions to acidity by enthalpy and entropy changes as well as by hydration of the various solute species.     

Hyperpolarizability of 6-vertex carboranes quantum chemical study

Structure and molecular first hyperpolarizability (β) of nitro-amino-substituted 6-vertex 1,6-carboranes are investigated by means of DFT calculations. The results obtained have revealed that the relative orientation of substituents with respect to the carborane cage influences bond lengths distribution in the cage, which leads to significant changes in the values of hyperpolarizabilities. Calculations with different basis sets have demonstrated that the value of β is not significantly affected by the choice of basis set. The calculated data shows that hyperpolarizability of carborane molecules substituted for carbon atoms is lower than when substituted for boron atoms. For latter molecule, the value of β is of the same order as that of para-nitroaniline molecule.     

Fe3O4/壳聚糖季铵盐磁共振造影剂的制备及肝造影性能

采用季铵盐化壳聚糖(HTCC)对Fe₃O₄进行表面改性, 成功制备在模拟生理环境中悬浮稳定的超顺磁性Fe₃O₄/HTCC复合纳米粒。通过动态光散射、透射电镜、振动样品磁强计、磁共振等手段对材料的性能进行表征, 并考察了其细胞相容性及磁共振造影性能。结果表明: 该方法所制备的超顺磁性复合纳米粒粒径均一, 模拟生理环境中具有良好的分散稳定性;体外实验表明该磁性纳米粒具有良好的细胞相容性;大鼠体内肝脏磁共振造影实验表明Fe₃O₄/HTCC纳米粒注入后, 大鼠肝实质信号强度明显下降, 因此Fe₃O₄/HTCC纳米粒有望作为潜在的阴性造影剂应用于肝磁共振造影检测。     

Fe3O4/壳聚糖季铵盐磁共振造影剂的制备及肝造影性能

采用季铵盐化壳聚糖(HTCC)对Fe₃O₄进行表面改性,成功制备在模拟生理环境中悬浮稳定的超顺磁性Fe₃O₄/HTCC复合纳米粒。通过动态光散射、透射电镜、振动样品磁强计、磁共振等手段对材料的性能进行表征,并考察了其细胞相容性及磁共振造影性能。结果表明:该方法所制备的超顺磁性复合纳米粒粒径均一,模拟生理环境中具有良好的分散稳定性;体外实验表明该磁性纳米粒具有良好的细胞相容性;大鼠体内肝脏磁共振造影实验表明Fe₃O₄/HTCC纳米粒注入后,大鼠肝实质信号强度明显下降,因此Fe₃O₄/HTCC纳米粒有望作为潜在的阴性造影剂应用于肝磁共振造影检测。     

In situ X-ray diffraction study of reduction processes of Fe3O4- and Fe1−xO-based ammonia-synthesis catalysts

The temperature-programmed reduction process of two types of industrial ammonia-synthesis catalysts, A110 and ZA-5, which are, respectively, based on Fe₃O₄ and Fe_1−xO precursors, were studied by in situ X-ray power diffraction (XRD). It has been found that the ZA-5 has lower reduction temperature and faster reduction rate, and its active phase α-Fe possesses a higher value of lattice microstrain than A110. The simulation based on Rietveld refinement has also shown that the shape of α-Fe grain of ZA-5 has a mixed shape of cube and sphere with more exposing (111) and (211) planes, while that of A110 looks like a concave cube with more exposing (110) planes. Based on the results obtained, a growth model of α-Fe during the reduction of Fe₃O₄- and Fe_1−xO-based ammonia-synthesis catalysts is proposed, and the origins for the activity difference has been also discussed.     

碱土金属叠氮化合物(MgN_6)_n(n=1～5)团簇结构与性质的密度泛函理论研究

利用密度泛函理论在B3LYP/6-311G*水平上对碱土金属叠氮化合物(MgN6)n(n=1～5)团簇各种可能构型进行了几何优化,预测了各团簇的最稳定结构。并对最稳定结构的成键特性、电荷分布、振动特性及稳定性进行理论研究。结果表明,叠氮化合物中叠氮基以直线型存在,MgN6团簇最稳定结构为直线型;(MgN6)2团簇最稳定结构为Mg2N2四元环平面结构;(MgN6)n(n=3～5)团簇最稳定结构是由2个叠氮基与2个Mg原子首先构成近似菱形,再由近似菱形延伸形成的链状结构。叠氮基中间的N原子显示正电性,两端的N原子显示负电性,且与Mg直接作用的N原子负电性更强,金属Mg原子和N原子之间形成很强的离子键。(MgN6)n(n=1～5)团簇最稳定结构的IR光谱分为4个部分,其最强振动峰均位于2209～2313cm-1,振动模式为叠氮基中N-N键的反对称伸缩振动。稳定性分析显示,(MgN6)3和(MgN6)5团簇相对于其他团簇较为稳定。     

Hydrogen-Bonding-Driven Ion-Pair Formation in Protic Ionic Liquid Aqueous Solution

Protic ionic liquids (PILs) in solution especially in water have attracted more and more attention due to their unique properties. The solvation of PILs in water is important to their properties and applications. To explore the solvation of bio-based PILs in water, acidity of 49 [AA]X amino acid ionic liquids (AAILs) consisting of 7 different cations and 7 different anions was studied as a favorable probe. The pK_a values for [AA]X PILs containing same cations were obtained and discussed. The acidity strength of the [AA]X PILs varies with both cation and anion which does not follow the conventional assumption that the acidity for PILs is independent of anions. The acidic discrepancy of [AA]X PILs aqueous solution is probably mediated by the formation of ion pairs according to a revised solvation model of PILs. Quantum-chemistry calculation was employed to unpuzzle anion's different effects on the acid balance of cations where cation-anion hydrogen bonds play an important role. Such difference in acidity allows us to understand the formation of solvated ion pairs. This work provides an insight into the fundamental solvation of PILs from acid perspective and their influence on acidity properties for the first time.     

Sensitivity of the properties of ruthenium "blue dimer" to method, basis set, and continuum model

The ruthenium "blue dimer" [(bpy)(2)Ru(III)OH(2)](2)O(4+) is best known as the first well-defined molecular catalyst for water oxidation. It has been subject to numerous computational studies primarily employing density functional theory. However, those studies have been limited in the functionals, basis sets, and continuum models employed. The controversy in the calculated electronic structure and the reaction energetics of this catalyst highlights the necessity of benchmark calculations that explore the role of density functionals, basis sets, and continuum models upon the essential features of blue-dimer reactivity. In this paper, we report Kohn-Sham complete basis set (KS-CBS) limit extrapolations of the electronic structure of "blue dimer" using GGA (BPW91 and BP86), hybrid-GGA (B3LYP), and meta-GGA (M06-L) density functionals. The dependence of solvation free energy corrections on the different cavity types (UFF, UA0, UAHF, UAKS, Bondi, and Pauling) within polarizable and conductor-like polarizable continuum model has also been investigated. The most common basis sets of double-zeta quality are shown to yield results close to the KS-CBS limit; however, large variations are observed in the reaction energetics as a function of density functional and continuum cavity model employed.     

Thermodynamic cycle for the calculation of ab initio pKa values for hydroxamic acids

A thermodynamic cycle to calculate pK_a values (Minus log of acid dissociation constants) of hydroxamic acids is presented. Hydroxamic acids exist mainly as amide isomers in the aqueous medium. The amide form of hydroxamic acids has two deprotonation sites and may yield either an N-ion or an O-ion upon deprotonation. The thermodynamic cycle proposed includes the gas-phase N–H deprotonation of the hydroxamic acid, the solvent phase transformation of the N-ion to the O-ion and the solvation of the hydroxamic acid molecule and the O-ion in water. The CBS-QB3 method was employed to obtain gas-phase free energy differences between 12 hydroxamic acids and their respective anions. The aqueous solvation Gibbs free energy changes were calculated at the HF/6-31G(d)/CPCM and HF/6-31+G(d)/CPCM levels of theory using HF/6-31+G(d)/CPCM geometries. For the proton, literature values of the gas-phase free energy of formation and the solvation free energy change were used. The free energy change for the transformation of the N-ion to O-ion in the aqueous medium was calculated by employing CBS-QB3/CPCM in the aqueous medium. For this, the hydroxamic acids were divided in two classes according to the substituent at the carbonyl carbon. A common transformation free energy difference for aliphatic substituted hydroxamic acids and a separate common transformation free energy difference for aromatic substituted hydroxamic acids were obtained. The pK_a calculation yielded a root mean square error of 0.32 pK_a units.     

Isomerization ofn-butane on the SO4/ZrO2 catalyst promoted by IV Period metals

The catalytic activity of superacidic systems based on SO₄/ZrO₂ and modified by IV Period metals in isomerization ofn-butane was studied. At low temperatures of the reaction, the introduction of Fe³⁺, Sc³⁺, Co²⁺, or Zn²⁺ ions (1%) increases the yield of isobutane by 1.5 times due to the activation ofn-butane on the sites created by the promoting ions. The addition of Cr³⁺, V⁴⁺, or Mn²⁺ (1%) decreases the catalytic activity because of a decrease in the catalyst acidity, most likely, due to the reduction of surface sulfur species. The influence of the nature of the support and surface additives of SiO₂, TiO₂, and ZrO₂ on the activity and selectivity of the catalytic system inn-butane isomerization was studied. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 7 pp. 1276–1280, July, 1999     

[Bmim]Cl/FeCl3离子液体催化α-生育酚与β-D-五乙酰葡萄糖的糖基化反应

以[Bmim]Cl/FeCl₃(三氯化铁/氯化丁基甲基咪唑)离子液体作为反应介质和催化剂, 考察了离子液体的酸度、反应温度及反应时间对α-生育酚与β-D-五乙酰吡喃型葡萄糖糖基化反应的影响. 结果表明, 离子液体的催化活性与其酸强度密切相关, 离子液体的酸性越强, 其对此糖基化反应催化活性越高. 在FeCl₃与[Bmim]Cl物质的量比为2的[Bmim]Cl/FeCl₃离子液中, α-生育酚与β-D-五乙酰吡喃型葡萄糖在45 ℃下反应3 h, 可以得到较高的转化率, α-生育酚的转化率最高可达70.2%. 同有机溶剂作为反应介质相比, 反应条件温和, 反应时间短, 室温离子液体具有更好的催化活性, 所得产物与离子液体不溶, 便于分离, 催化体系可循环使用, 且对环境友好.     

Relative pKa of some anilinium derivatives in methanol,acetonitrile, and tetrahydrofurane solvents

In this study, the relative pK_a values of nine anilinium derivatives in methanol (MeOH), acetonitrile (AN), and tetrahydrofurane (THF) solutions were successfully calculated with mean absolute deviations of 0.63, 0.68, and 0.75 pK_a units, respectively. To this aim, their gas‐phase basicities were computed using the CBS‐QB3 composite method. Also, conductor‐like polarizable continuum model (CPCM) with UAHF, UAKS and UA0 cavities and SM8 solvation models at HF/6‐31+G(d) level of theory were applied for the calculation of the solvation Gibbs free energies. The obtained results indicate that there is reliable correlation between the experimental and computed pK_a values in the studied solutions. Therefore, to extend the pK_a database for anilines, correlation equations were used to predict the pK_a values in the investigated solvents.     

Catalytically Promoted NOx Sorption by ZrO2-Based Oxides

Metal promoted zirconia-based oxide sorbents, such as Pt–ZrO₂/Al₂O₃ for NO _x have been investigated. To clarify the role of the catalyst component, sorption of NO and NO₂ was compared using the samples with and without Pt. The catalytic oxidation of NO to NO₂ and successively to nitrate ions is an important role for the Pt catalyst. The experimental results indicate that a high-temperature calcination is essential to remove residual Cl from Pt–ZrO₂–Al₂O₃ prepared from H₂PtCl₆ in order to provide more active NO _x sorption sites. Of M–ZrO₂–Al₂O₃ samples investigated, ruthenium as well as Pt demonstrated relatively good performance as a catalyst component in the sorbent. The FT-IR spectra after sorption of NO and NO₂ demonstrated a strong band attributed to stored nitrate ions. The Pt catalyst was more resistant to sulfur poisoning than a base metal catalyst. However, the NO _x sorptive capacities of the Pt–ZrO₂/Al₂O₃ sorbents were expected to be deteriorated in dilute SO₂ as far as observed from FT-IR spectra.     

Conformation dependence of pKa’s of the chromophores from the purple asFP595 and yellow zFP538 fluorescent proteins

Two members of the green fluorescent protein family, the purple asFP595 and yellow zFP538 proteins, are perspective fluorescent markers for use in multicolor imaging and resonance energy-transfer applications. We report the results of quantum based calculations of the solution pK_a values for selected protonation sites of the denatured asFP595 and zFP538 chromophores in the trans- and cis-conformations in order to add in the interpretation of photo-physical properties of these proteins. The pK_a values were determined from the theromodynamic cycle based on B3LYP/6-311++G(2df, 2p) calculations of the gas phase free energies of the molecules and the B3LYP/6-311++G(d, p) calculations of solvation energies. The results show that the pK_a’s of the protonation sites of the chromophore from asFP595 noticeably depend on the isomer conformation (cis- or trans-), while those of zFP538 are much less sensitive to isomerization.     

Theoretical study of reaction mechanisms for the ketonization of vinyl alcohol in gas phase and aqueous solution

Theoretical ab initio calculations are done on different mechanisms for the conversion of vinyl alcohol to acetaldehyde, both in gas phase and in solution. Several basis sets are used in order to assess the accuracy of the results in gas phase and a continuum model of the solvent is employed to mimic reactions in water solution. The results indicate a catalytic action of water in hydrated clusters in gas phase, whereas in solution, and within the error limits of our calculations, both neutral water-chain and ionic mechanisms appear to be equally probable. Finally, the action of acids or bases is tested through the analysis of the reaction of vinyl alcohol with H₃O⁺ and HO^–. The results of the calculations are shown to be in qualitative agreement with the experimental facts when 6-31++G basis set is used but not when either STO-3G or 4-31G basis sets are employed.