Harmonic and anharmonic features of IR and NIR absorption and VCD spectra of chiral 4-X-[2.2]paracyclophanes

The vibrational absorption spectra and vibrational circular dichroism (VCD) spectra of both enantiomers of 4-X-[2.2]paracyclophanes (X = COOCD3, Cl, I) have been recorded for a few regions in the range of 900-12000 cm(-1). The analysis of the VCD spectra for the two IR regions, 900-1600 cm(-1) and 2800-3200 cm(-1), is conducted by comparing with DFT calculations of the corresponding spectra; the latter region reveals common motifs of vibrational modes for the three molecules for aliphatic CH stretching fundamentals, whereas in the mid-IR region, one is able to identify specific signatures arising from the substituent groups X. In the CH stretching region between 2900 and 2800 cm(-1), we identify and interpret a group of three IR VCD bands due to HCH bending overtone transitions in Fermi resonance with CH stretching fundamental transitions. The analysis of the NIR region between approximately 8000 and approximately 9000 cm(-1) for X = COOCD3 reveals important features of the aromatic CH stretching overtones that are of value since the aromatic CH stretching fundamentals are almost silent. The intensifying of such overtones is attributed to electrical anharmonicity terms, which are evaluated here by ab initio methods and compared with literature data.     

Near-infrared and mid-infrared investigations of Na-dodecylbenzenesulfate intercalated into hydrocalumite chloride (CaAl-LDH-Cl)

Hydrocalumite (CaAl-LDH-Cl) belongs to layered double hydroxides (LDHs). The intercalation of Na-dodecylbenzenesulfate (SDBS) into CaAl-LDH-Cl has been investigated by X-ray diffraction (XRD), mid-infrared (MIR) spectroscopy and near-infrared (NIR) spectroscopy. The mid-infrared spectra indicated that SDBS could be intercalated into CaAl-LDH-Cl, with the same lattice structure to that of CaAl-LDH-Cl, and the interlayer distance of resultant product was expanded to 2.78 nm as confirmed by XRD. The near-infrared spectra (9200-4000 cm(-1)) showed that a special spectral range from 6200 to 5600 cm(-1) and prominent bands of CaAl-LDH-Cl intercalated with SDBS around 8300 cm(-1). This band was assigned to the second overtone of the first fundamental of C-H stretching vibrations of SDBS, and can be used to determinate the result of CaAl-LDH-Cl modified by anionic surfactants. The bands of water stretching vibrations and -OH groups shifted to higher wavenumbers when CaAl-LDH-Cl was intercalated by SDBS, and their intensity of MIR and NIR spectra became lower in intensity.     

Overtone spectroscopy of chlorine substituted benzene derivatives

The absorption spectra of di-, tri- and tetra-derivatives of chlorobenzene have been studied in their pure form in the spectral range 400-20,000 cm(-1). A large number of bands associated with the fundamental, the overtones and the combination frequencies of C-H stretching mode have been observed. Vibrational frequencies, anharmonicity constants and dissociation energies, for the C-H stretch vibrations for the six molecules have been determined using local mode model. The C-H stretch frequencies obtained from experiments are compared with the corresponding frequency determined theoretically using RHF and DFT methods with same 6-31+G* basis set. This information has been used for the assignment of several combination bands as well as some weak overtone bands. Effect of hydrogen atom substitution by chlorine atom has been studied by measuring changes in the vibrational frequency of the C-H stretching mode and the C-H bond length. Frequency changes have been well correlated with the change in charge density on carbon as well as chlorine atoms.     

Vibrational absorption and circular dichroism studies of (-)-camphanic acid

Vibrational absorption and circular dichroism (VCD) spectra of (-)-(1S,3R)-camphanic acid have been measured in deuterated chloroform solutions at different concentrations (0.005, 0.045, and 0.200 M) in the mid-infrared spectral range. Experimental spectra have been compared with the density functional theory (DFT) absorption and VCD spectra, calculated using the B3PW91 functional and cc-pVTZ basis set for three conformers of both the monomer and the dimer forms of (-)-(1S,3R)-camphanic acid. These calculations indicate that, in the dilute solution, the conformer with intramolecular hydrogen-bonding between the hydroxyl and lactone groups is of lowest energy and represents 70% of the different monomer conformers at room temperature, whereas, in concentrated solution, the dimer formed by intermolecular hydrogen-bonding of carboxyl groups of the two distinct monomer conformations is stabilized. The vibrational absorption and circular dichroism spectra calculated from the Boltzmann population of the individual monomer and dimer conformers are in very good overall agreement with the corresponding experimental spectra, allowing the absolute conformation and configuration of (-)-(1S,3R)-camphanic acid in dilute and concentrated solution, respectively. Experiments were also performed on (-)-(1S,3R)-camphanic chloride for which the populations predicted by DFT calculations are found to be in disagreement with those deduced from experimental spectra.     

Vibrationally quantum-state-specific dynamics of the reactions of CN radicals with organic molecules in solution

The dynamics of reactions of CN radicals with cyclohexane, d(12)-cyclohexane, and tetramethylsilane have been studied in solutions of chloroform, dichloromethane, and the deuterated variants of these solvents using ultraviolet photolysis of ICN to initiate a reaction. The H(D)-atom abstraction reactions produce HCN (DCN) that is probed in absorption with sub-picosecond time resolution using ～500 cm(-1) bandwidth infrared (IR) pulses in the spectral regions corresponding to C-H (or C-D) and C≡N stretching mode fundamental and hot bands. Equivalent IR spectra were obtained for the reactions of CN radicals with the pure solvents. In all cases, the reaction products are formed at early times with a strong propensity for vibrational excitation of the C-H (or C-D) stretching (v(3)) and H-C-N (D-C-N) bending (v(2)) modes, and for DCN products there is also evidence of vibrational excitation of the v(1) mode, which involves stretching of the C≡N bond. The vibrationally excited products relax to the ground vibrational level of HCN (DCN) with time constants of ～130-270 ps (depending on molecule and solvent), and the majority of the HCN (DCN) in this ground level is formed by vibrational relaxation, instead of directly from the chemical reaction. The time-dependence of reactive production of HCN (DCN) and vibrational relaxation is analysed using a vibrationally quantum-state specific kinetic model. The experimental outcomes are indicative of dynamics of exothermic reactions over an energy surface with an early transition state. Although the presence of the chlorinated solvent may reduce the extent of vibrational excitation of the nascent products, the early-time chemical reaction dynamics in these liquid solvents are deduced to be very similar to those for isolated collisions in the gas phase. The transient IR spectra show additional spectroscopic absorption features centered at 2037 cm(-1) and 2065 cm(-1) (in CHCl(3)) that are assigned, respectively, to CN-solvent complexes and recombination of I atoms with CN radicals to form INC molecules. These products build up rapidly, with respective time constants of 8-26 and 11-22 ps. A further, slower rise in the INC absorption signal (with time constant >500 ps) is attributed to diffusive recombination after escape from the initial solvent cage and accounts for more than 2/3 of the observed INC.     

Determination of the absolute configuration of chiral alpha-aryloxypropanoic acids using vibrational circular dichroism studies: 2-(2-chlorophenoxy) propanoic acid and 2-(3-chlorophenoxy) propanoic acid

The enantiomers of 2-(2-chlorophenoxy) propanoic acid and 2-(3-chlorophenoxy) propanoic acid were resolved on a chiral HPLC column and investigated using mid-infrared vibrational circular dichroism (VCD). Experimental infrared vibrational absorption and VCD spectra were measured in CDCl3 solution in the 2000-900 cm-1 region and compared with the ab initio predictions of absorption and VCD spectra. The predicted spectra were obtained with density functional theory using B3LYP/6-31G* basis set for the stable and dominant conformers. But the predicted spectra did not provide unambiguous structural information due to intermolecular hydrogen bonding in solution. To eliminate the hydrogen bonding effects, the acids were converted to the corresponding methyl esters and the experimental absorbance and VCD spectra of methyl esters were measured. B3LYP predicted spectra were also obtained for the stable and dominant conformers of the esters. From a comparison of the experimental VCD spectra of methyl esters with corresponding ab initio predictions, the absolute configurations of esters, and therefore of their parent acids, are unambiguously determined to be (+)-(R).     

Reaction dynamics and vibrational spectroscopy of CH3D molecules with both C-H and C-D stretches excited

State-resolved reactions of CH3D molecules containing both C-H and C-D stretching excitation with Cl atoms provide new vibrational spectroscopy and probe the consumption and disposal of vibrational energy in the reactions. The vibrational action spectra have three different components, the combination of the C-H symmetric stretch and the C-D stretch (nu1 + nu2), the combination of the C-D stretch and the C-H antisymmetric stretch (nu2 + nu4), and the combination of the C-D stretch and the first overtone of the CH3 bend (nu2 + 2nu5). The simulation for the previously unanalyzed (nu2 + nu4) state yields a band center of nu0 = 5215.3 cm(-1), rotational constants of A = 5.223 cm(-1) and B = 3.803 cm(-1), and a Coriolis coupling constant of zeta = 0.084. The reaction dynamics largely follow a spectator picture in which the surviving bond retains its initial vibrational excitation. In at least 80% of the reactive encounters of vibrationally excited CH3D with Cl, cleavage of the C-H bond produces CH2D radicals with an excited C-D stretch, and cleavage of the C-D bond produces CH3 radicals with an excited C-H stretch. Deviations from the spectator picture seem to reflect mixing in the initially prepared eigenstates and, possibly, collisional coupling during the reaction.     

Vibrationally controlled chemistry: mode- and bond-selected reaction of CH3D with Cl

Selective vibrational excitation controls the competition between C-H and C-D bond cleavage in the reaction of CH(3)D with Cl, which forms either HCl + CH(2)D or DCl + CH(3). The reaction of CH(3)D molecules with the first overtone of the C-D stretch (2nu(2)) excited selectively breaks the C-D bond, producing CH(3) exclusively. In contrast, excitation of either the symmetric C-H stretch (nu(1)), the antisymmetric C-H stretch (nu(4)), or a combination of antisymmetric stretch and CH(3) umbrella bend (nu(4) + nu(3)) causes the reaction to cleave only a C-H bond to produce solely CH(2)D. Initial preparation of C-H stretching vibrations with different couplings to the reaction coordinate changes the rate of the H-atom abstraction reaction. Excitation of the symmetric C-H stretch (nu(1)) of CH(3)D accelerates the H-atom abstraction reaction 7 times more than excitation of the antisymmetric C-H stretch (nu(4)) even though the two lie within 80 cm(-1) of the same energy. Ab initio calculations and a simple theoretical model help identify the dynamics behind the observed mode selectivity.     

Absolute configuration and conformational stability of (+)-2,5-dimethylthiolane and (-)-2,5-dimethylsulfolane

Enantiopure (+)-2,5-dimethylthiolane and (-)-2,5-dimethylsulfolane were prepared using literature procedures and investigated using vibrational circular dichroism (VCD). Experimental absorption and VCD spectra of (+)-2,5-dimethylthiolane and (-)-2,5-dimethylsulfolane in CCl(4) solution in the 2000-900 cm(-)(1) region were compared with the ab initio predictions of absorption and VCD spectra obtained with density functional theory using the B3LYP/6-311G(2d, 2p) basis set for different conformers of (2R,5R)-2,5-dimethylthiolane and (2R,5R)-2,5-dimethylsulfolane. This comparison indicates that (+)-2,5-dimethylthiolane is of the (2R,5R)-configuration and has two predominant conformations in CCl(4) solution. In addition, (-)-2,5-dimethylsulfolane is of (2R,5R)-configuration and has only one predominant conformation. The stereochemical assignment is in agreement with literature.     

Absolute configurations, predominant conformations, and tautomeric structures of enantiomeric tert-butylphenylphosphinothioic acid.

Vibrational absorption and circular dichroism spectra of dextrorotatory, levorotatory, and racemic mixture of tert-butylphenylphosphinothioic acid have been measured in CCl(4) solutions in the 2000-900 cm(-1) region. The conformations for both tautomeric structures of (S)-tert-butylphenylphosphinothioic acid are investigated using the B3LYP functional with the 6-31G* basis set. For the most stable conformation, the absorption and VCD spectra are predicted ab initio using the B3LYP functional with 6-31G*, 6-311G(2d, 2p), 6-31+G, and 6-311G(3df, 3pd) basis sets. A different functional, B3PW91, was also used with the 6-31G* basis set. The predicted spectra are compared to the experimental spectra. The comparison indicates that (-)-tert-butylphenylphosphinothioic acid is of the (S)-configuration and exists in only one tautomeric structure and one conformation in CCl(4) solution.     

Absolute configurations, predominant conformations and tautomeric structures of enantiomeric tert-butylphenylphosphine oxides

Enantiomeric tert-butylphenylphosphine oxides have been isolated via resolution of the racemate with mandelic acid and investigated by using vibrational circular dichroism (VCD). Vibrational absorption and circular dichroism spectra of dextrorotatory, levorotatory, and racemic mixture of tert-butylphenylphosphine oxide have been measured in CDCl(3) and CHCl(3) solutions in the 2000-900 cm(-)(1) region. Experimental spectra are compared with the ab initio predictions of absorption and VCD spectra obtained with density functional theory using B3LYP/6-31G basis set for different tautomeric structures and conformers of (S)-tert-butylphenylphosphine oxide. This comparison indicates that (-)-tert-butylphenylphosphine oxide is of the (S)-configuration and indicates only one tautomeric structure and one conformation predominant for tert-butylphenylphosphine oxide in CDCl(3) and CHCl(3) solutions.     

Blue shifts and unusual intensity changes in the infrared spectra of the enflurane···acetone complexes: spectroscopic and theoretical studies

Blue-shifting C-H···O hydrogen-bonded complexes between enflurane (CHFCl-CF(2)-O-CHF(2)) and deuterated acetone have been identified in CCl(4) solution by FT-IR spectroscopy. For the two ν(C-H) stretching vibrations of enflurane the observed blue shifts are +17 and +11 cm(-1). The corresponding two infrared ν(C-H) bands show the opposite changes of their intensity, one is decreasing, and the other is significantly increasing, upon formation of the hydrogen bonding. The structures, binding energies, and theoretical infrared spectra of the enflurane-acetone complexes were calculated by MP2 and B3LYP methods using the 6-311++G(d,p) basis set. The interaction energies were evaluated by the complete basis set limit (CBS) calculations at the HF, MP2, and CCSD(T) levels of theory. Although the MP2 method slightly overestimates the blue shifts, the MP2 predicted frequency difference and the relative IR intensities of two ν(C-H) stretching bands for the enflurane-acetone complexes show good agreement with experiment. Unfortunately, the B3LYP method predicts incorrect IR intensities of these hydrogen-bonded systems. The NBO analysis was performed to unravel the origin of the unusual intensity changes of two ν(C-H) stretching bands, in enflurane complexes.     

A theoretical anharmonic study of the infrared absorption spectra of FHF-, FDF-, OHF-, and ODF- anions

Anharmonic vibrational frequencies, equilibrium bond lengths, rotational constants, and vibrational absorption spectra have been calculated for the triatomic anions, FHF(-) and OHF(-), and the heavier isotopomers FDF(-) and ODF(-). The triatomic anions are assumed to maintain a collinear configuration throughout all calculations, so only the symmetric (nu(1)) and asymmetric (nu(3)) stretching modes are considered. The two-dimensional permanent dipole surfaces and potential energy surfaces are then constructed along bond coordinates, using high-level ab initio methods. Fundamental and combination bands are obtained from the vibrational eigenfunctions, resulting in anharmonic frequencies, which can be compared with the available theoretical and experimental data. The agreement is very good, especially for the pure symmetric modes, while the asymmetric ones show larger discrepancies, presumably due to the neglected coupling between stretching and bending modes. Strong inverse anharmonicity is found in the level spacing of the asymmetric modes, for both FHF(-) and OHF(-) anions. The calculated mixed modes (nnu(1)+mnu(3), n, m=0-3) also agree reasonably with the few available experimental data, supporting our model. Based on the vibrational eigenfunctions, isotope effects are also rationalized. Infrared absorption spectra are calculated from the dipole autocorrelation function for FHF(-) and FDF(-), and for OHF(-) and ODF(-). Peak locations and relative intensities are assigned in terms of the fundamental and mixed transitions.     

Overtone spectra of aniline derivatives

Overtone spectra of 2-ethylaniline, N-methylaniline, N-ethylaniline, N,N-dimethylaniline and N,N-diethylaniline have been studied in 2500-15000 cm(-1) region. Vibrational frequency and anharmonicity constants for aryl/alkyl C-H stretch and N-H stretch vibrations have been determined. The effect of substitution of C(2)H(5) group on the ortho position in the ring and CH(3)/C(2)H(5) at the positions of the H-atom in NH(2) group has been studied in these molecules. It is noted that the aryl C-H stretching frequency and the N-H stretching frequency is appreciably increased due to the replacement of H in NH(2) group by CH(3)/C(2)H(5). These experimental observations are well supported by theoretical calculations for charge density on N-atom using molecular orbital AM(1) method.     

Evidence for a carbonyl-containing intermediate in the 308-nm photolysis of trans-RhCl(CO)(PMe3)2

Time-resolved infrared absorption spectroscopy is used to monitor the events during the first approximately 100 mus following 308-nm photolysis of trans-RhCl(CO)(PMe3)2 (I) in a C6D6 or Decalin solution. Upon photolysis, the intensity of the carbonyl stretching absorption of I decreases and a new C-O stretching absorption (A) appears at 2006 cm(-1) in C6D6 (2013 cm(-1) in Decalin). Within approximately 100 mus, A disappears concurrently with partial regeneration of I and oxidative addition of a solvent C-D (C-H) bond. Our observation of the prompt formation of a carbonyl-containing intermediate contrasts with prior observations that photolysis at longer wavelengths leads solely to dissociation of CO from I. The implications of the observation of A for the understanding of the mechanisms of photocatalytic reactions of I are discussed.     

Vibrational circular dichroism and absolute configuration of chiral sulfoxides: tert-butyl methyl sulfoxide

Mid-infrared vibrational unpolarised absorption and vibrational circular dichroism (VCD) spectra of CCl4 solutions of tert-butyl methyl sulfoxide (1) are reported. The spectra are compared to ab initio density functional theory (DFT) calculations carried out using two functionals, B3PW91 and B3LYP, and two basis sets, 6-31G* and TZ2P. The VCD spectra are calculated using Gauge-invariant atomic orbitals (GIAOs). The analysis of the VCD spectrum confirms the R(-)/S(+) absolute configuration of 1. The advantages and disadvantages of VCD spectroscopy in determining the absolute configurations of chiral sulfoxides are discussed.     

Solvent effects on IR and VCD spectra of natural products: an experimental and theoretical VCD study of pulegone

The VCD spectra of pulegone, dissolved in CDCl3, CD2Cl2 and CS2 have been recorded in the frequency range from 1000 to 3000 cm(-1). The assignment of the absolute configuration was performed by comparing the experimental data with theoretical spectra computed at the B3LYP/6-311+G(d,p) level. Analysis of the agreement in several spectral regions revealed significant shortcomings when comparing with vacuum calculations. It is shown that the agreement improves when the solvent effects are taken into account by a continuum model. For the measurements in CDCl3 and CD2Cl2 further improvement was found when considering explicitly 1 : 1 complexes between a pulegone and a CDCl3 or CD2Cl2 solvent molecule in vacuo, while the best agreement was obtained when embedding these in a continuum model. The presence of the chiral solute was found to induce a VCD active C-D stretch band which could be modeled also at ab initio level.     

Vibrational spectroscopic force field studies of dimethyl sulfoxide and hexakis(dimethyl sulfoxide)scandium(III) iodide, and crystal and solution structure of the hexakis(dimethyl sulfoxide)scandium(III) ion

Hexakis(dimethyl sulfoxide)scandium(III) iodide, [Sc(OS(CH(3))(2))(6)]I(3) contains centrosymmetric hexasolvated scandium(III) ions with an Sc-O bond distance of 2.069(3) angstroms. EXAFS spectra yield a mean Sc-O bond distance of 2.09(1) angstroms for solvated scandium(III) ions in dimethyl sulfoxide solution, consistent with six-coordination. Raman and infrared absorption spectra have been recorded, also of the deuterated compound, and analysed by means of normal coordinate methods, together with spectra of dimethyl sulfoxide. The effects on the vibrational spectra of the weak intermolecular C-H...O interactions and of the dipole-dipole interactions in liquid dimethyl sulfoxide have been evaluated, in particular for the S-O stretching mode. The strong Raman band at 1043.6 cm(-1) and the intense IR absorption at 1062.6 cm(-1) have been assigned as the S-O stretching frequencies of the dominating species in liquid dimethyl sulfoxide, evaluated as centrosymmetric dimers with antiparallel polar S-O groups. The shifts of vibrational frequencies and force constants for coordinated dimethyl sulfoxide ligands in hexasolvated trivalent metal ion complexes are discussed. Hexasolvated scandium(iii) ions are found in dimethyl sulfoxide solution and in [Sc(OSMe(2))(6)]I(3). The iodide ion-dipole attraction shifts the methyl group C-H stretching frequency for (S-)C-H...I(-) more than for the intermolecular (S-)C-H...O interactions in liquid dimethyl sulfoxide.     

Vibrational circular dichroism (VCD) studies on disaccharides in the CH region: toward discrimination of the glycosidic linkage position

The structural features of carbohydrates are a combination of 1) sequence and types of mono-sugars, 2) stereochemistry of their glycosidic linkages, and 3) their glycosidic linkage sites. We performed the first systematic VCD study on glycoside linking site discrimination. VCD spectra, in the CH stretching region from 2000 to 4000 cm(-1), of eleven glucobioses (trehalose (alpha1-alpha1), neotrehalose (alpha1-beta1), isotrehalose (beta1-beta1), kojibiose (alpha1-2), nigerose (alpha1-3), maltose (alpha1-4), isomaltose (alpha1-6), sophorose (beta1-2), laminaribiose (beta1-3), cellobiose (beta1-4), gentiobiose (beta1-6)) suggested a possible new discrimination method for glyco analysis, while VCD spectra in the mid-IR region distinguished the stereochemistry (alpha or beta) of the glycosidic linkage. Both reducing and nonreducing glucobioses showed different VCD spectral features compared to their constituent D-glucose and the anomer-fixed model compounds. Interresidue interaction such as hydrogen bonding was suggested to cause these spectral differences. Interplay between residues is a common phenomenon and thus VCD analysis could be applicable to other di-, oligo- or poly-saccharides. Several isotropic labeled compounds were also measured to support spectral assignment and interpretation.     

The vibrational spectrum of alpha-AlOOH diaspore: an ab initio study with the CRYSTAL code

The vibrational spectrum of alpha-AlOOH diaspore has been calculated at the B3LYP level of theory with a double-zeta quality Gaussian-type basis set by using the periodic ab initio CRYSTAL code. Harmonic frequencies at the Gamma point and the corresponding 48 normal modes are analyzed and classified in terms of simple models (octahedra modes, hydrogen stretching, bending, rotations) by direct inspection of eigenvectors, graphical representation, and isotopic substitution. Hydrogen modes are fully separated from the octahedra modes appearing under 800 cm(-1); bending modes are located in the range of 1040-1290 cm(-1), whereas stretching modes appear at 3130-3170 cm(-1). The available experimental IR and Raman spectra are characterized by broad bands, in some cases as large as 800 cm(-1), and individual peaks are obtained by decomposing these bands in terms of Lorentz-Gauss product functions; such a fitting procedure is affected by a relatively large degree of arbitrariness. The comparison of our calculated data with the most complete sets of experimental data shows, nevertheless, a relatively good agreement for all but the H modes; the mean absolute differences for modes not involving H are 10.9 and 7.2 cm(-1) for the IR and the Raman spectra, respectively, the maximum differences being 15.5 and 18.2 cm(-1). For the H bending modes, differences increase to 30 and 37 cm(-1), and for the stretching modes, the calculated frequencies are about 200 cm(-1) higher than the experimental ones; this is not surprising, as anharmonicity is expected to red shift the OH stretching by about 150 cm(-1) in isolated OH groups and even more when the latter is involved in strong hydrogen bonds, as is the case here.