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1.
Isotope effects have been measured for the abstraction of hydrogen from a series of organic substrates by the perfluoro radical, Na+ -O3SCF2CF2OCF2CF2*, in water. Both primary and secondary deuterium isotope effects were measured, with the primary isotope effects ranging in value from 4.5 for isopropanol to 19.6 for acetic acid. The values for the alpha- and beta-secondary deuterium isotope effects were 1.06 and 1.035, respectively. It was concluded that tunneling contributes significantly to the production of the observed, large primary kinetic isotope effects in these C-H abstraction reactions.  相似文献   

2.
A series of aryl-substituted N-hydroxyphthalimides (X-NHPIs) containing either electron-withdrawing groups (4-CH(3)OCO, 3-F) or electron-donating groups (4-CH(3), 4-CH(3)O, 3-CH(3)O, 3,6-(CH(3)O)(2)) have been used as catalysts in the aerobic oxidation of primary and secondary benzylic alcohols. The selective formation of aromatic aldehydes was observed in the oxidation of primary alcohols; aromatic ketones were the exclusive products in the oxidation of secondary alcohols. O-H bond dissociation enthalpies (BDEs) of X-NHPIs have been determined by using the EPR radical equilibration technique. BDEs increase with increasing the electron-withdrawing properties of the aryl substituent. Kinetic isotope effect studies and the increase of the substrate oxidation rate by increasing the electron-withdrawing power of the NHPI aryl substituent indicate a rate-determining benzylic hydrogen atom transfer (HAT) from the alcohol to the aryl-substituted phthalimide-N-oxyl radical (X-PINO). Besides enthalpic effects, polar effects also play a role in the HAT process, as shown by the negative rho values of the Hammett correlation with sigma(+) and by the decrease of the rho values (from -0.54 to -0.70) by increasing the electron-withdrawing properties of the NHPI aryl substituent. The relative reactivity of 3-CH(3)O-C(6)H(4)CH(2)OH and 3,4-(CH(3)O)(2)-C(6)H(3)CH(2)OH, which is higher than expected on the basis of the sigma(+) values, the small values of relative reactivity of primary vs secondary benzylic alcohols, and the decrease of the rho values by increasing the electron-withdrawing properties of the NHPI aryl substituent, suggest that the HAT process takes place inside a charge-transfer (CT) complex formed by the X-PINO and the benzylic alcohol.  相似文献   

3.
Deuterium kinetic isotope effects for hydroxylation of the methyl group of 4-methylphenylalanine have been used as a probe of the relative reactivities of the hydroxylating intermediates in the aromatic amino acid hydroxylases phenylalanine, tyrosine, and tryptophan hydroxylase. When there are three deuterium atoms in the methyl group, all three enzymes exhibit an intrinsic isotope effect of about 13. The temperature dependence of the isotope effect is consistent with moderate tunneling, with the extent of tunneling identical for all three enzymes. In the case of phenylalanine hydroxylase, the presence of the regulatory domain has no effect on the values. The intrinsic primary and secondary isotope effects were determined using 4-methylphenylalanine containing one or two deuterium atoms in the methyl group. With one deuterium atom, the intrinsic primary and secondary effects have average values of 10 and 1.1, respectively. With two deuterium atoms, the primary effects decrease to 7.4 and the secondary effect increases to 1.3, consistent with coupled motion of the primary and secondary hydrogens. The results with all three enzymes are consistent with a hydrogen abstraction mechanism. The similarities of the isotope effects and extent of tunneling establish that the reactivities of the hydroxylating intermediates in the three enzymes are essentially identical.  相似文献   

4.
Anomeric equilibrium isotope effects for dissolved sugars are required preludes to understanding isotope effects for these molecules bound to enzymes. This paper presents a full molecule study of the alpha- and beta-anomeric forms of D-glucopyranose in water using deuterium conformational equilibrium isotope effects (CEIE). Using 1D (13)C NMR, we have found deuterium isotope effects of 1.043 +/- 0.004, 1.027 +/- 0.005, 1.027 +/- 0.004, 1.001 +/- 0.003, 1.036 +/- 0.004, and 0.998 +/- 0.004 on the equilibrium constant, (H/D)K(beta/alpha), in [1-(2)H]-, [2-(2)H]-, [3-(2)H]-, [4-(2)H]-, [5-(2)H]-, and [6,6'-(2)H(2)]-labeled sugars, respectively. A computational study of the anomeric equilibrium in glucose using semiempirical and ab initio methods yields values that correlate well with experiment. Natural bond orbital (NBO) analysis of glucose and dihedral rotational equilibrium isotope effects in 2-propanol strongly imply a hyperconjugative mechanism for the isotope effects at H1 and H2. We conclude that the isotope effect at H1 is due to n(p) --> sigma* hyperconjugative transfer from O5 to the axial C1--H1 bond in beta-glucose, while this transfer makes no contribution to the isotope effect at H5. The isotope effect at H2 is due to rotational restriction of OH2 at 160 degrees in the alpha form and 60 degrees in the beta-sugar, with concomitant differences in n --> sigma* hyperconjugative transfer from O2 to CH2. The isotope effects on H3 and H5 result primarily from syn-diaxial steric repulsion between these and the axial anomeric hydroxyl oxygen in alpha-glucose. Therefore, intramolecular effects play an important role in isotopic perturbation of the anomeric equilibrium. The possible role of intermolecular effects is discussed in the context of recent molecular dynamics studies on aqueous glucose.  相似文献   

5.
A series of model theoretical calculations are described that suggest a new mechanism for the oxidation step in enzymatic cytochrome P450 hydroxylation of saturated hydrocarbons. A new class of metastable metal hydroperoxides is described that involves the rearrangement of the ground-state metal hydroperoxide to its inverted isomeric form with a hydroxyl radical hydrogen bonded to the metal oxide (MO-OH --> MO....HO). The activation energy for this somersault motion of the FeO-OH group is 20.3 kcal/mol for the P450 model porphyrin iron(III) hydroperoxide [Por(SH)Fe(III)-OOH(-)] to produce the isomeric ferryl oxygen hydrogen bonded to an *OH radical [Por(SH)Fe(III)-O....HO(-)]. This isomeric metastable hydroperoxide, the proposed primary oxidant in the P450 hydroxylation reaction, is calculated to be 17.8 kcal/mol higher in energy than the ground-state iron(III) hydroperoxide Cpd 0. The first step of the proposed mechanism for isobutane oxidation is abstraction of a hydrogen atom from the C-H bond of isobutane by the hydrogen-bonded hydroxyl radical to produce a water molecule strongly hydrogen bonded to anionic Cpd II. The hydroxylation step involves a concerted but nonsynchronous transfer of a hydrogen atom from this newly formed, bound, water molecule to the ferryl oxygen with a concomitant rebound of the incipient *OH radical to the carbon radical of isobutane to produce the C-O bond of the final product, tert-butyl alcohol. The TS for the oxygen rebound step is 2 kcal/mol lower in energy than the hydrogen abstraction TS (DeltaE() = 19.5 kcal/mol). The overall proposed new mechanism is consistent with a lot of the ancillary experimental data for this enzymatic hydroxylation reaction.  相似文献   

6.
157 nm photodissociation of jet-cooled CH3OH and C2H5OH was studied using the high-n Rydberg atom time-of-flight (TOF) technique. TOF spectra of nascent H atom products were measured. Simulation of these spectra reveals three different atomic H loss processes: one from hydroxyl H elimination, one from methyl (ethyl) H elimination, and one from secondary dissociation of the methoxy (ethoxy) radical. The relative branching ratio indicates secondary dissociation of ethoxy is less important than that of methoxy. The average angular anisotropy parameter of methanol is negative (withβ≈-0.3), indicating the transition dipole moment is perpendicular to the C-O-H plane. The slightly more negative β value of ethanol (with β≈-0.4) implies that ethanol has a longer rotational period. These experimental results indicate that both systems undergo fast internal conversion to the 3s surface after it is excited to the 3px surface, and then dissociate on the 3s surface. The translational energy distribution of the CH3O+H products reveals extensive CH3 rocking or CH3 umbrella excitation in the CH3O radical. However the vibrational structures are not resolved in the C2H5O radical  相似文献   

7.
《Electroanalysis》2018,30(8):1706-1713
The radical redox mediator tetrachloro‐phthalimido‐N‐oxyl (Cl4PINO) is generated at a glassy carbon electrode and investigated for the model oxidation of primary and secondary alcohols with particular attention to reaction rates and mechanism. The two‐electron oxidation reactions of a range of primary, secondary, and cyclic alcohols are dissected into an initial step based on C−H hydrogen abstraction (rate constant k1, confirmed by kinetic isotope effect) and a fast radical‐radical coupling of the resulting alcohol radical with Cl4PINO to give a ketal that only slowly releases the aldehyde/ketone and redox mediator precursor back into solution (rate constant k2). In situ electrochemical EPR reveals Cl4PINO sensitivity towards moisture. DFT methods are applied to confirm and predict C−H hydrogen abstraction reactivity.  相似文献   

8.
Diaminohydroxymethyl (1) and triaminomethyl (2) radicals were generated by femtosecond collisional electron transfer to their corresponding cations (1+ and 2+, respectively) and characterized by neutralization-reionization mass spectrometry and ab initio/RRKM calculations at correlated levels of theory up to CCSD(T)/aug-cc-pVTZ. Ion 1+ was generated by gas-phase protonation of urea which was predicted to occur preferentially at the carbonyl oxygen with the 298 K proton affinity that was calculated as PA = 875 kJ mol-1. Upon formation, radical 1 gains vibrational excitation through Franck-Condon effects and rapidly dissociates by loss of a hydrogen atom, so that no survivor ions are observed after reionization. Two conformers of 1, syn-1 and anti-1, were found computationally as local energy minima that interconverted rapidly by inversion at one of the amine groups with a <7 kJ mol-1 barrier. The lowest energy dissociation of radical 1 was loss of the hydroxyl hydrogen atom from anti-1 with ETS = 65 kJ mol-1. The other dissociation pathways of 1 were a hydroxyl hydrogen migration to an amine group followed by dissociation to H2N-C=O* and NH3. Ion 2+ was generated by protonation of gas-phase guanidine with a PA = 985 kJ mol-1. Electron transfer to 2+ was accompanied by large Franck-Condon effects that caused complete dissociation of radical 2 by loss of an H atom on the experimental time scale of 4 mus. Radicals 1 and 2 were calculated to have extremely low ionization energies, 4.75 and 4.29 eV, respectively, which belong to the lowest among organic molecules and bracket the ionization energy of atomic potassium (4.34 eV). The stabilities of amino group containing methyl radicals, *CH2NH2, *CH(NH2)2, and 2, were calculated from isodesmic hydrogen atom exchange with methane. The pi-donating NH2 groups were found to increase the stability of the substituted methyl radicals, but the stabilities did not correlate with the radical ionization energies.  相似文献   

9.
Poly(methacrylic acid) (PMAA) oligomers were synthesized by combining template polymerization and copper‐mediated atom transfer polymerization with multivinyl monomer of β‐cyclodextrin (CD) having 20.4 methacryloyl groups on both primary and secondary hydroxyl group sides of CD scaffold, with 1,3‐dibromobutane as an initiator. The initiation and propagation sites of polymerized sequence of β‐CD were connected by postpolymerization of polymerized products with CuBr and tris[(2‐dimethylamino)ethyl]amine (Me6TREN) in a methanol/water mixture of 10 wt % of water. Polymerized and cyclized sequences, PMAA oligomers formed on the primary and the secondary hydroxyl group sides, were detached from β‐CD scaffold by hydrolysis. Molecular weights of PMAA oligomers were measured by GPC and matrix assisted laser desorption ionization time‐of‐flight mass measurement. By 1H NMR measurements, it was found that three types of cyclic PMAA were obtained by postpolymerization. The cyclization preferentially occurred on the secondary hydroxyl group side than on the primary hydroxyl group side. From the structures of cyclic PMAA, two reaction positions were proposed. © 2005 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 43: 6262–6271, 2005  相似文献   

10.
Five pathways leading to the deamination of cytosine (to uracil) after formation of its deprotonated radical cation are investigated in the gas phase, at the UB3LYP/6‐311G(d,p) level of theory, and in bulk aqueous solvent. The most favorable pathway involves hydrogen‐atom transfer from a water molecule to the N3 nitrogen of the deprotonated radical cation, followed by addition of the resulting hydroxyl radical to the C4 carbon of the cytosine derivative. Following protonation of the amino group (N4), the C4? N4 bond is broken with elimination of the NH3?+ radical and formation of a protonated uracil. The rate‐determining step of this mechanism is hydrogen‐atom transfer from a water molecule to the cytosine derivative. The associated free energy barrier is 70.2 kJ mol?1.  相似文献   

11.
The orientation of addition of H atoms to the asymmetric olefins propylene, butene-1, and isobutene has been determined as a function of atom concentration, olefin concentration, hydrogen pressure, total pressure, and olefin conversion. Conditions have been determined for which complicating secondary processes are believed to be unimportant. The percentage of nonterminal addition is 5.7, 5.7, and 0.48 for propylene, butene-1, and isobutene, respectively. From these data activation energy differences between nonterminal and terminal addition of 1.7 and 3.2 kcal/mole for the linear olefins and isobutene, respectively, may be calculated. For D atom addition to propylene, a small isotope effect was observed, nonterminal addition being 5.4%. These observations are consistent with a predominantly free radical or electroneutral character for H atoms.  相似文献   

12.
The reactions between either a hydrogen atom or a hydroxyl radical and 5-methylcytosine (5-MeCyt) are studied by using the hybrid kinetic energy meta-GGA functional MPW1B95. *H atom and *OH radical addition to positions C5 and C6 of 5-MeCyt, or *OH radical induced H-abstraction from the C5 methyl group, are explored. All systems are optimized in bulk solvent. The data presented show that the barriers to reaction are very low: ca. 7 kcal/mol for the *H atom additions and 1 kcal/mol for the reactions involving the *OH radical. Thermodynamically, the two C6 radical adducts and the *H-abstraction product are the most stable ones. The proton hyperfine coupling constants (HFCC), computed at the IEFPCM/MPW1B95/6-311++G(2d,2p) level, agree well with B3LYP results and available experimental and theoretical data on related thymine and cytosine radicals.  相似文献   

13.
The mechanism of hydroxyl radical initiated degradation of a typical oil sands process water (OSPW) alicyclic carboxylic acid was studied using cyclohexanoic acid (CHA) as a model compound. By use of vacuum ultraviolet irradiation (VUV, 172 nm) and ultraviolet irradiation in the presence of hydrogen peroxide UV(254 nm)/H(2)O(2), it was established that CHA undergoes degradation through a peroxyl radical. In both processes the decay of the peroxyl radical leads predominantly to the formation of 4-oxo-CHA, and minor amounts of hydroxy-CHA (detected only in UV/H(2)O(2)). In UV/H(2)O(2), additional 4-oxo-CHA may also have been formed by direct reaction of the oxyl radical with H(2)O(2). The oxyl radical can be formed during decay of the peroxyl-CHA radical or reaction of hydroxy-CHA with hydroxyl radical. Oxo- and hydroxy-CHA further degraded to various dihydroxy-CHAs. Scission of the cyclohexane ring was also observed, on the basis of the observation of acyclic byproducts including heptadioic acid and various short-chain carboxylic acids. Overall, the hydroxyl radical induced degradation of CHA proceeded through several steps, involving more than one hydroxyl radical reaction, thus efficiency of the UV/H(2)O(2) reaction will depend on the rate of generation of hydroxyl radical throughout the process. In real applications to OSPW, concentrations of H(2)O(2) will need to be carefully optimized and the environmental fate and effects of the various degradation products of naphthenic acids considered.  相似文献   

14.
It has been speculated that the presence of OH(H2O)n clusters in the troposphere could have significant effects on the solar absorption balance and the reactivity of the hydroxyl radical. We have used the G3 and G3B3 model chemistries to model the structures and predict the frequencies of hydroxyl radical/water clusters containing one to five water molecules. The reaction between hydroxyl radical clusters and methane was examined as a function of water cluster size to gain an understanding of how cluster size affects the hydroxyl radical reactivity.  相似文献   

15.
Tandem mass spectrometry methods were used to study the sites of protonation and for identification of 3-amino-1,2,4-benzotriazine 1,4-dioxide (1, tirapazamine), and its metabolites (3-amino-1,2,4-benzotriazine 1-oxide (3), 3-amino-1,2,4-benzotriazine 4-oxide (4), 3-amino-1,2,4-benzotriazine (5), and a related isomer 3-amino-1,2,4-benzotriazine 2-oxide (6). Fragmentation pathways of 3 and 5 indicated the 4-N-atom as the most likely site of protonation. Among the N-oxides studied, the 4-oxide (4) showed the highest degree of protonation at the oxygen atom. The differences in collision-induced dissociation of isomeric protonated 1-, 2- and 4-oxides allowed for their identification by LC/MS/MS. Gas phase and liquid phase protonation of tirapazamine occurred exclusively at the oxygen in the 4-position. A loss of OH radical from these ions (2(+)) resulted in ionized 3. Neutralization-reionization mass spectrometry (NR MS) experiments demonstrated the stability of the neutral analogue of protonated tirapazamine in the gas phase in the micro s time-frame. A significant portion of the neutral tirapazamine radicals (2) dissociated by loss of hydroxyl radical during the NR MS event, which indicates that previously proposed mechanisms for redox-activated DNA damage are reasonable. The activation energy for loss of hydroxyl radical from activated tirapazamine (2) was estimated to be approximately 14 kcal mol(-1). Stable neutral analogues of [3 + H](+) and [5 + H](+) ions were also generated in the course of NR MS experiments. Structures of these radicals were assigned to the molecules having an extra hydrogen atom at one of the ring N-atoms. Quantum chemical calculations of protonated 1, 3, 4 and 5 and the corresponding neutrals were performed to assist in the interpretation of experimental results and to help identify their structures.  相似文献   

16.
The McLafferty rearrangement of photoionized 3-methyl valeramide proceeds quasi-barrierless and with high regioselectivity. The mass spectra of the stereospecifically labeled syn- and anti-[4-D(1)]-diastereomers reveal a strong preference for activation of the gamma-hydrogen/deuterium in anti-position relative to the methyl group at C(3), which serves as a steric marker. Quantitative analysis of the fragmentation patterns of other photoionized isotopomers permits the determination of primary and secondary kinetic isotope effects (KIEs), the branching ratios of competing McLafferty reactions, and the steric effect (SE) associated with transfer of the diastereotopic H(D) atoms at C(4). While the associated KIEs of the title reaction are negligible, the steric effect (SE = 2.9) is remarkably large for the otherwise flexible, monofunctional compound. The findings can be explained by a preferentially chairlike transition structure for the initial gamma-H atom transfer.  相似文献   

17.
Density functional theory has been used to investigate the nature of the oxidizing agent in the Fenton reaction. Starting from the primary intermediate [FeII(H2O)5H2O2]2+, we show that the oxygen-oxygen bond breaking mechanism has a small activation energy and could therefore demonstrate the catalytic effect of the metal complex. The O-O bond cleavage of the coordinated H2O2, however, does not lead to a free hydroxyl radical. Instead, the leaving hydroxyl radical abstracts a hydrogen from an adjacent coordinated water leading to the formation of a second Fe-OH bond and of a water molecule. Along this reaction path the primary intermediate transforms into the [FeIV(H2O)4(OH)2]2+ complex and in a second step into a more stable high valent ferryl-oxo complex [FeIV(H2O)5O]2+. We show that the energy profile along the reaction path is strongly affected by the presence of an extra water molecule located near the iron complex. The alternative intermediate [FeII(H2O)4(OOH-)(H3O+)]2+ suggested in the literature has been also investigated, but it is found to be unstable against the primary intermediate. Our results support a picture in which an FeIV-oxo complex is the most likely candidate as the active intermediate in the Fenton reaction, as indeed first proposed by Bray and Gorin already in 1932.  相似文献   

18.
The potential energy surface for the rearrangement of BF(3)-coordinated 2,3,3-trimethyl-1,2-epoxybutane to 2,3, 3-trimethylbutanal has been investigated at the B3LYP/6-31G level of theory. SCRF(SCI-PCM) solvent calculations and theoretical primary and secondary kinetic isotope effects at the same level of theory provide support for a two-step process with ring opening of the BF(3)-coordinated epoxide to a tertiary carbocation intermediate followed by hydride/deuteride migration to give aldehyde. The experimentally measured primary isotope effect (k(H)(D)/k(D)(H)) requires a correction for an appropriate secondary isotope effect to give a true isotope effect k(H)(H)/k(D)(H). For the lowest energy pathway for hydride migration, the calculated secondary kinetic isotope effect is 0.92, which when applied to the experimentally measured isotope effect of k(H)(D)/k(D)(H) = 1.73 gives a revised "true" primary kinetic isotope effect of k(H)(H)/k(D)(H) = 1.59. This compares with a calculated value of 2.01. From intermediate 15, migration of the C1-H(a) proton via 19 is energetically favored over C1-H(b) migration via 18 and this result is consistent with the experimental results in which hydride migration of the proton cis to the methyl is favored.  相似文献   

19.
Collisional neutralization of several isomeric C(4)H(7)O(2) cations is used to generate radicals that share some structural features with transient species that are thought to be produced by radiolysis of 2-deoxyribose. The title 2-hydroxyoxolan-2-yl radical (1) undergoes nearly complete dissociation when produced by femtosecond electron transfer from thermal organic electron donors dimethyl disulfide and N,N-dimethylaniline in the gas phase. Product analysis, isotope labeling ((2)H and (18)O), and potential energy surface mapping by ab initio calculations at the G2(MP2) and B3-PMP2 levels of theory and in combination with Rice-Ramsperger-Kassel-Marcus (RRKM) kinetic calculations are used to assign the major and some minor pathways for 1 dissociations. The major (approximately 90%) pathway is initiated by cleavage of the ring C-5[bond]O bond in 1 and proceeds to form ethylene and *CH(2)COOH as main products, whereas loss of a hydrogen atom forms 4-hexenoic acid as a minor product. Loss of the OH hydrogen atom forming butyrolactone (2, approximately 9%) and cleavage of the C-3[bond]C-4 bonds (<1%) in 1 are other minor pathways. The major source of excitation in 1 is by Franck-Condon effects that cause substantial differences between the adiabatic and vertical ionization of 1 (5.40 and 6.89 eV, respectively) and vertical recombination in the precursor ion 1(+) (4.46 eV). (+)NR(+) mass spectra distinguish radical 1 from isomeric radicals 2-oxo-(1H)oxolanium (3), 1,3-dioxan-2-yl (9), and 1,3-dioxan-4-yl (10) that were generated separately from their corresponding ion precursors.  相似文献   

20.
The kinetics of the oxidation of trans-[RuIV(tmc)(O)(solv)]2+ to trans-[RuVI(tmc)(O)2]2+ (tmc is 1,4,8,11-tetramethyl-1,4,8,11-tetraazacyclotetradecane, a tetradentate macrocyclic tertiary amine ligand; solv = H2O or CH3CN) by MnO4- have been studied in aqueous solutions and in acetonitrile. In aqueous solutions the rate law is -d[MnO4]/dt = kH2O[RuIV][MnO4-] = (kx + (ky)/(Ka)[H+])[RuIV][MnO4-], kx = (1.49 +/- 0.09) x 101 M-1 s-1 and ky = (5.72 +/- 0.29) x 104 M-1 s-1 at 298.0 K and I = 0.1 M. The terms kx and ky are proposed to be the rate constants for the oxidation of RuIV by MnO4- and HMnO4, respectively, and Ka is the acid dissociation constant of HMnO4. At [H+] = I = 0.1 M, DeltaH and DeltaS are (9.6 +/- 0.6) kcal mol-1 and -(18 +/- 2) cal mol-1 K-1, respectively. The reaction is much slower in D2O, and the deuterium isotope effects are kx/kxD = 3.5 +/- 0.1 and ky/kyD = 5.0 +/- 0.3. The reaction is also noticeably slower in H218O, and the oxygen isotope effect is kH216O/kH218O = 1.30 +/- 0.07. 18O-labeled studies indicate that the oxygen atom gained by RuIV comes from water and not from KMnO4. These results are consistent with a mechanism that involves initial rate-limiting hydrogen-atom abstraction by MnO4- from coordinated water on RuIV. In acetonitrile the rate law is -d[MnO4-]/dt = kCH3CN[RuIV][MnO4-], kCH3CN = 1.95 +/- 0.08 M-1 s-1 at 298.0 K and I = 0.1 M. DeltaH and DeltaS are (12.0 +/- 0.3) kcal mol-1 and -(17 +/- 1) cal mol-1 K-1, respectively. 18O-labeled studies show that in this case the oxygen atom gained by RuIV comes from MnO4-, consistent with an oxygen-atom transfer mechanism.  相似文献   

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