Porphyrin distortion from resonance Raman intensities of out-of-plane modes: Computation and modeling of N-methylmesoporphyrin, a ferrochelatase transition state analog

Resonance Raman spectra of porphyrins are computed with DFT/CIS methodology to monitor out-of-plane distortions. A framework is established for assessing protein-induced distortion of porphyrin bound to a ferrochealatase antibody. Tests on undistorted porphyrins give good agreement with the experimental intensity pattern of in-plane modes for free-base porphine (FBP) and mesorporphyrin IX free base (MP). The computed spectrum of N-methylmesoporphyrin (NMP), in which the methyl-substituted pyrrole ring is tilted 32 degrees from the mean porpyrin plane, also gives reasonable agreement with experiment and reveals activation of out-of-plane (oop) vibrational modes. To model oop distortions systematically, an artificial molecule, FBP-X8, was constructed, in which the H atoms attached to the FBP pyrrole Cb atoms are replaced by heavy substituents, as in physiological porphyrins. Oop mode enhancements are computed for FBP-X8 by displacing it along the canonical distortion coordinates: doming, saddling, ruffling and waving. When FBP-X8 is constrained to the NMP porphyrin geometry, normal coordinate decomposition reveals significant contributions also from modes higher in frequency than the canonical modes, and they contribute importantly to the computed RR intensities. NMP-constrained FBP-X8 gives a reasonable facsimile of the NMP RR spectrum, but better results are obtained with a full computation of MP, constrained in the same way; thus the physiological substituents have significant influence on the RR spectra, over and above their effective masses. Attention focuses on a mode analogous to gamma 15 in 4-fold symmetric porphyrins, which is a kind of saddling mode. This mode is selectively enhanced in NMP-constrained MP; a corresponding RR band is induced upon binding MP to a ferrochelatase antibody.     

Symmetry properties of vibrational modes in mesoporphyrin IX dimethyl ester investigated by polarization-sensitive resonance Raman and CARS spectroscopy

The symmetry properties of selected vibrational modes of mesoporphyrin IX dimethyl ester (MP-IX-DME) in solution are investigated under different electronic resonance conditions. The Raman band parameters of the macrocycle modes nu(2), nu(10), nu(11), and nu(19) are determined from a quantitative analysis of polarized spontaneous resonance Raman (RR) and polarization-sensitive (PS) multiplex coherent anti-Stokes Raman scattering (CARS) spectra obtained with pre-resonant B band and resonant Qx band excitation, respectively. Additionally, the molecular geometry and the vibrational modes of MP-IX-DME are calculated by employing density functional theory (DFT) on the B3LYP/6-31G(d) level. Both the DFT-derived structure and the Raman spectroscopic parameters of MP-IX-DME indicate minor deviations from an ideal D2h macrocycle symmetry. To assess the influence of the beta substitution pattern on the in-plane symmetry, calculated normal-mode vectors and several experimentally detected parameters, such as peak positions, depolarization ratios, and coherent phases, are analyzed. The effects of the macrocycle substitution pattern are different for the selected vibrational modes: nu(2) in particular is very sensitive to subtle perturbations of the in-plane symmetry. The considerable activity of totally symmetric vibrations observed in the PS CARS spectra of MP-IX-DME and the correlation of mode symmetries with coherent phases confirm earlier PS CARS results on octaethylporphine (OEP) acquired under the same electronic resonance conditions.     

Resonance Raman studies of beta-substituted porphyrin systems with unusual electronic absorption properties.

Zn(II) and Cu(II) porphyrins with beta-conjugated barbiturate functional groups have low-energy electronic transitions which are unusual in that there are two strong bands in the Soret region. Resonance excitation of the two bands shows that each has features characteristic of both the porphyrin and barbiturate groups, with some perturbation to these features caused by the interaction of the two chromophores. The resonance Raman (RR) spectrum (lambda(exc)=413.1 nm) of the 412 nm band shows two bands at 1722 and 1743 cm(-1) attributable to C==O stretches in the substituent. Changes in frequency of porphyrin core modes due to the differing metal centres are reproduced by density functional theory calculations. The Q band RR spectra show modes with anomalous polarization which may be attributed to A(2g) modes, however no overtone or combination bands are observed.     

Fingerprinting Petroporphyrin Structures with Vibrational Spectroscopy. 4. Resonance Raman Spectra of Nickel(II) Cycloalkanoporphyrins: Structural Effects Due To Exocyclic Ring Size

Nickel(II) complexes of cycloalkanoporphyrins (CAPs) bearing a saturated carbon ring of varying size between pyrrole C(beta) and methine bridge carbon atoms are widespread in crude oil and related organic rich sediments. We have synthesized a series of NiCAPs containing meso,beta-ethano (NiCAP5), meso,beta-propano (NiCAP6), and meso,beta-butano (NiCAP7) groups and applied UV-visible absorption and resonance Raman (RR) spectroscopies to investigate the effects of the exocyclic ring size on the porphyrin structure and to establish vibrational CAP marker frequencies for petroporphyrins in fossil fuels. The RR spectra of NiCAPs, excited at or near porphyrin Soret ( approximately 400 nm) and Q (510-580 nm) bands are informative and display a rich array of skeletal and alkyl substituent modes. High-frequency (1300-1700 cm(-)(1)) structure-sensitive RR bands shift down considerably (up to 24 cm(-)(1)) with increasing size of the exocyclic ring, implicating increased nonplanar distortions of the tetrapyrrole macrocycle. Unlike in other petroporphyrins studied thus far, etio- and tetrahydrobenzoporphyrins, out-of-plane distortions of the porphyrin imposed by the meso,beta-cycloalkano ring are also sufficient to destroy the center of symmetry of the porphyrin pi-system and produce significant enhancement of the IR-active E(u) skeletal modes in the Q-band-excited RR spectra. The UV-visible absorption spectra also vary with the size of the exocyclic ring; both the Soret and Q bands progressively red shift as the cycloalkano chain becomes longer, implying a destabilization of the two highest occupied pi orbitals in NiCAP6 and NiCAP7. In addition, the size of the exocyclic ring in NiCAPs can be readily determined from the frequency of the approximately 900 cm(-)(1) marker band and the characteristic patterns of skeletal and substituent bands in the 700-1200 and nu(4) ( approximately 1380 cm(-)(1)) regions.     

Peroxidase activity of cationic metalloporphyrin-antibody complexes

Peroxidase activity of a complex of water-soluble cationic metalloporphyrin with anti-cationic porphyrin antibody is reported. Antibody 12E11G, which was prepared by immunization with a conjugate of 5-(4-carboxyphenyl)-10,15,20-tris(4-methylpyridyl)porphine iodide (3MPy1C), bound to tetramethylpyridylporphyrin iron complex (FeIII-TMPyP) with the dissociation constant of 2.6 x 10(-7) M. The complex of antibody 12E11G with FeIII-TMPyP catalyzed oxidation of pyrogallol, catechol, and guaiacol. A Lineweaver-Burk plot for the oxidation of pyrogallol catalyzed by the FeIII-TMPyP-antibody complex showed Km=8.6 mM and kcat=680 min(-1). Under the same conditions, Km and kcat for horseradish peroxidase (HRP) were 0.8 mM and 1750 min(-1), respectively. Although the binding interaction of the antibody to the substrates was one order lower than that of native HRP, the peroxidase activity of this system was in the same order of magnitude as that of HRP.     

The linear dichroism spectra of free base and manganese(III) porphyrins

Linear dichroism of tetraphenylporphyrin and mesoporphyrin IX dimethyl ester are reported together with their manganese (III) derivatives, using both stretched polythene films and liquid crystals as the orienting solvents. All observed electronic transitions in the range 350–900 nm are found to be polarised in the plane of the porphyrin ring.     

Antioxidative effect of several porphyrins on lipid peroxidation in rat liver homogenates

The effect of several porphyrins on Fe2(+)-ascorbic acid-stimulated lipid peroxidation was examined in rat liver homogenates. Not only protoporphyrin IX (PP) but also mesoporphyrin IX and hematoporphyrin inhibited the lipid peroxidation. Some porphyrins, in which 6- and 7-carboxyethyl groups were esterified with a methyl group, such as protoporphyrin IX dimethyl ester and mesoporphyrin IX dimethyl ester, had no antioxidative effect. Hemin and zinc protoporphyrin IX, which are metal-chelated porphyrins, inhibited the lipid peroxidation while cobalt protoporphyrin IX and tin protoporphyrin IX showed no antioxidative effect. Thus, some of the porphyrins used in the present study showed an antioxidative effect as did PP, but the others did not show such an effect.     

Separation of porphyrin isomers by high-performance liquid chromatography

A high-speed reversed-phase high-performance liquid chromatographic method using an octadecylsilyl 3 cm long (3 microns particle size) column to separate the free acids of uroporphyrins I and III and coproporphyrins I and III from each other, and from the type I isomers of several other porphyrin carboxylic acids, is described. Separation of the porphyrins was achieved in less than 8 min, and injections were possible every 12 min. The detection limits of uroporphyrin, coproporphyrin, and mesoporphyrin were 75, 45, and 35 fmol (at a signal-to-noise ratio of 2), respectively. Application of the method to the determination of urinary and liver porphyrin patterns is shown.     

A Convenient Hydrogenation Method for the Synthesis of Metallo‐mesoporphyrin IX Dimethyl Esters via Self‐catalyzed CoCl2‐NaBH4 Reagent System

A convenient protocol has been developed for the hydrogenation of metallo‐protoporphyrin IX dimethyl esters (MPPDMEs) to their mesoporphyrin analogues using CoCl₂‐NaBH₄ reagent system. Metallo‐porphyrin complexes were found to perform as self‐catalysts in this procedure. This method provides several advantages such as safe and simple procedure, short reaction time, high yields and low cost.     

HPLC determination of ferrochelatase activity in human liver

A method utilizing HPLC to estimate ferrochelatase activity in human liver cells is presented. A partially purified homogenate of liver cells is incubated with mesoporphyrin IX and cobalt(II)ion. The ferrochelatase in the homogenate incorporates the cobalt(II)ion into the mesoporphyrin. After a fixed time (90 min) the porphyrins are extracted into an ethyl acetate-acetic acid mixture. The porphyrins are then separated using reversed phase HPLC with a mobile phase of methanol-acetonitrile-phosphate buffer pH 3.0 (200:60:30 v/v). The enzyme activity is estimated by measuring the rate of utilization of mesoporphyrin. The optimum pH and substrate concentration for the reaction have been determined.     

Resonance Raman spectra of n-pi* singlet-triplet transition of p-benzoquinone at low concentrations

A weak visible absorption spectrum of p-benzoquinone (p-BQ) in CS2 due to n-pi* singlet-triplet transition was measured. Using the resonance Raman (RR) effect in liquid-core optical fiber (LCOF), we have obtained the 514.5 nm excited RR spectra of p-benzoquinone near 1445 cm(-1) and have demonstrated that the new characteristic RR band is attributed to the symmetric C=O stretch (nu(C=O)) of n-pi* singlet-triplet transition of p-BQ. The effect of solution concentration on the RR band was investigated at very low concentrations. The RR peak spreads toward short wavelength side with decreasing solution concentration ranging from 10(-7) to 10(-11) mol L(-1), whereas the blue-shift isn't obvious when the concentration is, at single molecule level, lower than 10(-11) mol L(-1). Our result is useful for single molecule detection to some extent.     

Raman and infrared spectral study of meso-sulfonatophenyl substituted porphyrins (TPPSn,n = 1, 2A, 2O, 3, 4)

Raman and IR spectra of the free base p-sulfonatophenyl and phenyl meso-substituted porphyrins [5,10,15,20-tetrakis(4-sulfonatophenyl)porphyrin (TPPS4); 5,10,15-tris(4-sulfonatophenyl)-20-phenyl-porphyrin (TPPS3); 5,10-bis(4-sulfonatophenyl)-15,20-diphenylporphyrin (TPPS2A); 5,15-bis(4-sulfonatophenyl)-10,20-diphenylporphyrin (TPPS2O); and 5-(4-sulfonatophenyl)-10, 15,20-trisphenylporphyrin (TPPS1)] and their N-diprotonated derivatives (porphyrin diacids) were studied. The Raman spectra of the deuterated analogues of these porphyrins, in which the central hydrogen atoms were substituted with deuterium, were also measured. The observed vibrational bands were assigned on the basis of the deuteration shifts and compared with the structural analogues of these compounds. In IR spectra of the free-base porphyrins, the p-sulfonation of phenyl groups results in evident alteration for the phenyl modes and the porphyrin skeleton modes that are strongly coupled with phenyl vibrations. While the p-sulfonation of phenyl groups causes only slight changes for the high-frequency Raman bands (> 850 cm(-1)), dramatic shifts and band splitting were observed in the low-frequency region (< 500 cm(-1)) of Raman spectra. The observed differences of low-frequency Raman spectra were attributed to the alteration of the structure of the porphyrin ring, especially the CalphaCmCalpha bond-angles, by different meso-sulfonatophenyl substitutions. In addition, different packing style of TPPSn molecules in the aggregates is also responsible for the alteration of the vibrational spectra of the aggregated TPPSn.     

UV near-resonance Raman spectroscopic study of 1,1'-bi-2-naphthol solutions

The normal and UV near-resonance Raman (UVRR) spectra of 1,1'-bi-2-naphthol (BN) in basic solution were measured and analyzed. Density functional theory (DFT) calculations were carried out to study the ground state geometry structure, vibrational frequencies nu, off-resonance Raman intensities I, and depolarization ratios rho of 1,1'-bi-2-naphtholate dianion (BN(2-)). On the basis of the calculated and experimental results of nu, I, and rho, the observed Raman bands were assigned in detail. The 1612 cm(-1) Raman band of BN in basic solution was found dramatically enhanced in the UV resonance Raman spectrum in comparison with the normal Raman spectrum. Analyzing the depolarization ratios of the 1366 and 1612 cm(-1) bands in the RR spectra manifests that both the symmetric and antisymmetric parts of transition polarizabilities contribute to the 1366 cm(-1) band, but that only the symmetric part contributes to the 1612 cm(-1) band.     

In situ localization and structural analysis of the malaria pigment hemozoin

Raman microspectroscopy was applied for an in situ localization of the malaria pigment hemozoin in Plasmodium falciparum-infected erythrocytes. The Raman spectra (lambdaexc=633 nm) of hemozoin show very intense signals with a very good signal-to-noise ratio. These in situ Raman signals of hemozoin were compared to Raman spectra of extracted hemozoin, of the synthetic analogue beta-hematin, and of hematin and hemin. beta-Hematin was synthesized according to the acid-catalyzed dehydration of hematin and the anhydrous dehydrohalogenation of hemin which lead to good crystals with lengths of about 5-30 microm. The Raman spectra (lambdaexc=1064 nm) of hemozoin and beta-hematin show almost identical behaviors, while some low wavenumber modes might be used to distinguish between the morphology of differently synthesized beta-hematin samples. The intensity pattern of the resonance Raman spectra (lambdaexc=568 nm) of hemozoin and beta-hematin differ significantly from those of hematin and hemin. The most striking difference is an additional band at 1655 cm(-1) which was only observed in the spectra of hemozoin and beta-hematin and cannot be seen in the spectra of hematin and hemin. Raman spectra of the beta-hematin dimer were calculated ab initio (DFT) for the first time and used for an assignment of the experimentally derived Raman bands. The calculated atomic displacements provide valuable insight into the most important molecular vibrations of the hemozoin dimer. With help from these DFT calculations, it was possible to assign the Raman band at 1655 cm(-1) to a mode located at the propionic acid side chain, which links the hemozoin dimers to each other. The Raman band at 1568 cm(-1), which has been shown to be influenced by an attachment of the antimalarial drug chloroquine in an earlier study, could be assigned to a C=C stretching mode spread across one of the porphyrin rings and is therefore expected to be influenced by a pi-pi-stacking to the drug.     

Synthesis and characterization of alkanethiolate-coordinated iron porphyrins and their dioxygen adducts as models for the active center of cytochrome p450: direct evidence for hydrogen bonding to bound dioxygen.

Two kinds of novel cytochrome P450 models, which have alkanethiolate axial ligands and hydroxyl groups inside molecular cavities, were designed and synthesized as functional O(2) binding systems. A superstructured porphyrin, designated as "twin-coronet" porphyrin, was used as the common framework of the model complexes. This porphyrin bears four binaphthalene bridges on the both sides and forms two pockets surrounded by the bulky aromatic rings. Thiobenzyloxy and thioglycolate moieties, which contain an alkanethiolate group exhibiting various electron-donating abilities and degrees of bulkiness, were covalently linked to twin-coronet porphyrin to yield thiolate-coordinated hemes, TCP-TB and TCP-TG (twin-coronet porphyrin with thiobenzyloxy and thioglycolate groups), respectively. Both ferric complexes exhibited high stability during usual experimental manipulation under air and were characterized by MS, UV/vis, ESR spectroscopies, and CV. The ESR spectra exhibited low-spin signals (TCP-TB: g = 2.334, 2.210, 1.959; TCP-TG: g = 2.313, 2.209, 1.966). The cyclic voltammogram of TCP-TB in CH(3)CN gave a quasi-reversible wave which corresponds to the Fe(III)/Fe(II) redox couple: E(p)()(/2) = -1.35 V (vs Fc/Fc(+)). On the other hand, TCP-TG showed a fine reversible wave: E(1/2) (Fe(III)/Fe(II)) = -1.12 V. The stable dioxygen adducts were formed in the reaction of the ferric complexes with KO(2) under an oxygen atmosphere and characterized by UV/vis and resonance Raman (RR) spectroscopies. In the RR spectra, the nu(O--O) bands of the dioxygen adducts were observed at 1138 cm(-1) (TCP-TB) and 1137 cm(-1) (TCP-TG). The hypothesis that hydrogen bonding between the bound oxygen and the hydroxyl groups of the binaphthyl moieties could increase their stability was verified by RR spectroscopy. When all hydroxyl groups were deuterated, only the frequencies of the nu(O--O) bands were upshifted by 2 cm(-1) without any perturbation in the porphyrin skeleton. This work shows the first direct evidence for a hydrogen bond to dioxygen in an oxy form of a thiolate-coordinated heme model system. These results are discussed in context of the process of dioxygen binding and activation in cytochrome P450.     

Infrared and infrared emission spectroscopy of the zinc carbonate mineral smithsonite

Infrared emission and infrared spectroscopy has been used to study a series of selected natural smithsonites from different origins. An intense broad infrared band at 1440cm(-1) is assigned to the nu(3) CO(3)(2-) antisymmetric stretching vibration. An additional band is resolved at 1335cm(-1). An intense sharp Raman band at 1092cm(-1) is assigned to the CO(3)(2-) symmetric stretching vibration. Infrared emission spectra show a broad antisymmetric band at 1442cm(-1) shifting to lower wavenumbers with thermal treatment. A band observed at 870cm(-1) with a band of lesser intensity at 842cm(-1) shifts to higher wavenumbers upon thermal treatment and is observed at 865cm(-1) at 400 degrees C and is assigned to the CO(3)(2-)nu(2) mode. No nu(2) bending modes are observed in the Raman spectra for smithsonite. The band at 746cm(-1) shifts to 743cm(-1) at 400 degrees C and is attributed to the CO(3)(2-)nu(4) in phase bending modes. Two infrared bands at 744 and around 729cm(-1) are assigned to the nu(4) in phase bending mode. Multiple bands may be attributed to the structural distortion ZnO(6) octahedron. This structural distortion is brought about by the substitution of Zn by some other cation. A number of bands at 2499, 2597, 2858, 2954 and 2991cm(-1) in both the IE and infrared spectra are attributed to combination bands.     

Porphyrins

The Vilsmeier formylation of Cu²⁺, Ni²⁺, Co²⁺, and Fe³⁺Cl complexes with mesoporphyrin IX dimethyl ester was investigated. It was established that the formylation takes place at all four meso positions of the porphyrin ring and that replacement of one metal by another affects only the rate of formylation (it has no effect on the orientation of electrophilic substitution). Four isomers of meso-dimethylamino-methylmesoporphyrin IX dimethyl ester were obtained by reduction of the intermediate immonium salts.See [1] for communication VII.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 9, pp. 1215–1220, September, 1978.     

四甲基-四乙基钯卟啉的表面光伏特性研究

合成了1,3,5,7-四甲基-2,4,6,8-四乙基卟啉(TMTEP)及其钯络合物(PdTMTEP),并利用表面光电压谱(SPS)和场诱导表面光电压谱(FISPS)技术对它们的表面光伏特性进行了研究.TMTEP有较强的荧光发射,而PdTMTEP以磷光辐射为主,其光伏响应强度比TMTEP的强得多;在外电场诱导下,PdTMTEP的Soret带与Q带的光伏响应强度随外加正电场光伏响应强度的增加而增强,随外加负电场光伏响应强度的增加而减弱,并且在680,750nm处出现两个新的光伏响应带,这两个光伏响应带与极化子跃迁有关.     

Raman and UV-visible absorption spectra of ion-paired aggregates of copper porphyrins

Raman and UV-visible absorption spectra of ion-paired aggregate constructed from two copper porphyrins, copper tetrakis(4-N-methylpyridyl)porphyrin (CuTMPyP) and copper tetrakis(4-sulfonatophenyl)pophyrin (CuTSPP), are reported in this paper. The absorption bands of the aggregate was found exhibiting obvious shift and broadening, which are attributed to the excitonic coupling between the two paired porphyrin rings. The excitonic coupling in the aggregates also induces evident alteration for Raman intensities compared with monomer spectrum. Aggregation results in only small shifts (2-3 cm(-1)) for Raman lines connecting with the vibrations of porphyrin rings, manifesting only slight structural change of porphyrin skeletons. On the other hand, evident downshift (5 cm(-1)) was observed for the Cm-pyridyl stretch mode (1254 cm(-1)) of CuTMPyP, suggesting weakening of the Cm-pyridyl bonds by aggregation. Raman depolarization ratios of the aggregates are different from those of the monomers, implying a lowering of effective symmetry due to the molecular packing in the aggregates.