Kinetics of acid degradation of proton pump inhibitors in the presence of a thiol

An in vitro investigation of the kinetics of the complex system of acid‐catalyzed conversions and subsequent reactions of proton pump inhibitors (PPIs; omeprazole, lansoprazole and pantoprazole) was carried out using differential pulse polarography at the static mercury drop electrode. Reactions were investigated in the presence of 2‐mercaptoethanol, in solutions buffered to pH values ranging from 2.0 to 5.0. The first‐order reaction network was proposed for all conversions. The rate of degradation of PPIs and subsequent reactions with 2‐mercaptoethanol were found to follow the following general order: lansoprazole > omeprazole > pantoprazole. The rate of conversion of PPIs into sulfenic acid was found to be directly dependent on the basicity of benzimidazole nitrogen of PPIs, which determines the electrophilic reactivity of the adjacent carbon (C2). The rate of conversion of the sulfenic acid of PPIs into the disulfide (the inhibition reaction) was found to be dependent on the electrophilicity of the sulfur atom of the sulfenic acid. © 2009 Wiley Periodicals, Inc. Int J Chem Kinet 41: 498–506, 2009     

Theoretical study of the reduction mechanism of sulfoxides by thiols

Theoretical computations have been carried out to investigate the reaction mechanism of the sulfoxide reduction by thiols in solution. This reaction is a suitable model for enzymatic processes involving methionine sulfoxide reductases (Msrs). Recent investigations on the Msr mechanism have clearly shown that a sulfenic acid intermediate is formed on the catalytic cysteine of the active site concomitantly to the methionine product. In contrast, experimental studies for the reaction of a number of thiols and sulfoxides in solution did not observe sulfenic acid formation. Only, a disulfide was identified as the final product of the process. The present study has been carried out at the MP2/6-311+G(3d2f,2df,2p)//B3LYP/6-311G(d,p) level of theory. The solvent effect in DMSO has been incorporated using a discrete-continuum model. The calculations provide a basic mechanistic framework that allows discussion on the apparent discrepancy existing between experimental data in solution and in the enzymes. They show that, in the early steps of the process in solution, a sulfurane intermediate is formed the rate of which is limiting. Then, a proton transfer from a second thiol molecule to the sulfurane leads to the formation of either a sulfenic acid or a disulfide though the latter is much more stable than the former. If a sulfenic acid is formed in solution, it should react with a thiol molecule making its experimental detection difficult or even unfeasible.     

NMR study of thiosulfate-assisted oxidation of L-cysteine

The reaction of L-cysteine with sodium thiosulfate in aqueous solution at pH 9 affords mainly L-cystine with noticeable amounts of L-cysteine sulfonic anion ^–O₂CCH(NH⁺)CH SO^–. NMR study revealed the formation of intermediate L-cysteine sulfenic acid and L-cysteine S-sulfite, the latter existing in two active forms ^–O₂CCH(NH₂)CH₂S(=S)O^– and ^–O CCH(NH)CH SSO^–.     

Reaction of hydroxyl radicals with S-nitrosothiols: determination of rate constants and end product analysis

The reaction of the hydroxyl radical (.OH) with S-nitroso derivatives of cysteine, acetylcysteine and glutathione was studied at neutral and acidic pH. The second-order rate constants were determined by a competition kinetic method using a deoxyribose-thiobarbituric acid assay. The rate constants were diffusion controlled and were 2.27, 1.94 and 1.46 x 10(10) dm3 mol-1 s-1, for S-nitrosocysteine, S-nitrosoacetylcysteine and S-nitrosoglutathione respectively, at neutral pH. The major products of the degradation induced by .OH were found to be the corresponding disulfide (-S-S-) and nitrite (NO2-) at neutral pH as well as at pH 3. Simultaneous proton formation has also been observed. A plausible mechanism based on the formation of an intermediate thiol radical (RS.), as a result of electron transfer from the S-nitrosothiols (RSNOs) to .OH, is proposed for the formation of disulfide and nitrite at both pHs. The high rate constant values and the degradation of these compounds demonstrate the potential role of .OH in RSNO metabolism under physiological conditions.     

Chemistry of covalent inhibition of the gastric (H+, K+)-ATPase by proton pump inhibitors

Proton pump inhibitors (PPIs), drugs that are widely used for treatment of acid related diseases, are either substituted pyridylmethylsulfinyl benzimidazole or imidazopyridine derivatives. They are all prodrugs that inhibit the acid-secreting gastric (H(+), K(+))-ATPase by acid activation to reactive thiophiles that form disulfide bonds with one or more cysteines accessible from the exoplasmic surface of the enzyme. This unique acid-catalysis mechanism had been ascribed to the nucleophilicity of the pyridine ring. However, the data obtained here show that their conversion to the reactive cationic thiophilic sulfenic acid or sulfenamide depends mainly not on pyridine protonation but on a second protonation of the imidazole component that increases the electrophilicity of the C-2 position on the imidazole. This protonation results in reaction of the C-2 with the unprotonated fraction of the pyridine ring to form the reactive derivatives. The relevant PPI pK(a)'s were determined by UV spectroscopy of the benzimidazole or imidazopyridine sulfinylmethyl moieties at different medium pH. Synthesis of a relatively acid stable analogue, N(1)-methyl lansoprazole, (6b), allowed direct determination of both pK(a) values of this intact PPI allowing calculation of the two pK(a) values for all the PPIs. These values predict their relative acid stability and thus the rate of reaction with cysteines of the active proton pump at the pH of the secreting parietal cell. The PPI accumulates in the secretory canaliculus of the parietal cell due to pyridine protonation then binds to the pump and is activated by the second protonation on the surface of the protein to allow disulfide formation.     

Kinetic study on hydrolysis and oxidation of formamidine disulfide in acidic solutions

Hydrolysis and oxidation of formamidine disulfide in acidic medium were investigated using high-performance liquid chromatography(HPLC) and mass spectrometry(MS) at 25 °C.By controlling the slow reaction rate and choosing appropriate mobile phase,HPLC provides the unique advantages over other methods(UV-Vis,chemical separation) in species tracking and kinetic study.In addition to thiourea and formamidine sulfinic acid,two unreported products were also detected in the hydrolysis reaction.Mass spectrometry measurement indicates these two products to be formamidine sulfenic acid and thiocyanogen with mass weights of 92.28 and 116.36,respectively.In the oxidation of formamidine disulfide by hydrogen peroxide,besides thiourea,formamidine sulfenic acid,formamidine sulfinic acid,thiocyanogen and urea,formamidine sulfonic acid and sulfate could be detected.The oxidation reaction was found to be first order in both formamidine disulfide and hydrogen peroxide.The rate constants of hydrolysis and oxidation reactions were determined in the pH range of 1.5-3.0.It was found both rate constants are increased with the increasing of pH.Experimental curves of different species can be effectively simulated via a mechanism scheme for formamidine disulfide oxidation,including hydrolysis equilibrium of formamidine disulfide and irreversible hydrolysis of formamidine sulfenic acid.     

Studies on electron transfer reactions: oxidation of phenol and ring-substituted phenols by heteropoly 11-tungstophosphovanadate(V) in aqueous acidic medium

The kinetics of oxidation of phenol and a few ring-substituted phenols by heteropoly 11-tungstophosphovanadate(V), [PV^VW₁₁O₄₀]⁴⁻ (HPA) have been studied spectrophotometrically in aqueous acidic medium containing perchloric acid and also in acetate buffers of several pH values at 25 °C. EPR and optical studies show that HPA is reduced to the one-electron reduced heteropoly blue (HPB) [PV^IVW₁₁O₄₀]⁵⁻. In acetate buffers, the build up and decay of the intermediate biphenoquinone show the generation of phenoxyl radical (ArO^·) in the rate-determining step. At constant pH, the reaction shows simple second-order kinetics with first-order dependence of rate on both [ArOH] and [HPA]. At constant [ArOH], the rate of the reaction increases with increase in pH. The plot of apparent second-order rate constant, k ₂, versus 1/[H⁺] is linear with finite intercept. This shows that both the undissociated phenol (ArOH) and the phenoxide ion (ArO⁻) are the reactive species. The ArO⁻–HPA reaction is the dominant pathway in acetate buffer and it proceeds through the OH⁻ ion triggered sequential proton transfer followed by electron transfer (PT-ET) mechanism. The rate constant for ArO⁻–HPA reaction, calculated using Marcus theory, agrees fairly well with the experimental value. The reactivity of substituted phenoxide ions correlates with the Hammett σ⁺ constants, and ρ value was found to be −4.8. In acidic medium, ArOH is the reactive species. Retardation of rate for the oxidation of C₆H₅OD in D₂O indicates breaking of the O–H bond in the rate-limiting step. The results of kinetic studies show that the HPA-ArOH reaction proceeds through a concerted proton-coupled electron transfer mechanism in which water acts as proton acceptor (separated-CPET).     

The reciprocal influence between ion transport and degradation of PA66 in acid solution

Transport behavior of acid solution through polyamide was studied by measuring element distribution in cross section, pH, and ion concentration. Degree of degradation that related to the decreasing of molecular weight and flexural strength was observed in order to study the influence of acid solution on the polyamide 66 (PA66) degradation. The permeation mechanism of acid solution can be explained: at first water penetrates into polyamide and it is followed by acid. In this process, water does not affect the molecular weight at 50 °C but only reduces the polyamide strength by plasticization. Moreover, proton (H⁺) has contributed to the anion transport and degradation of polyamide by the hydrolytic reaction. Proton attacks the polyamide chain, and scission of chain occurs, and reacts with anion to form other material substance. This process affects the decrease of molecular weight and the significant loss of polyamide strength. Analysis results from ion concentration measurement shows that the amount of proton and anion transport into deionized waterside was imbalance, which probably due to the different mobility between proton and anion or formation of other material substance by reaction of anion and PA66 bond. Such information is not only necessary for the investigation of hydrolytic degradation of polymer and prediction of lifetimes for a protective polymer lining/coating to chemical attack, but may also be helpful towards gaining a deeper insight into the processes of degradation of other polymer.     

Studies on the oxygen atom transfer reactions of peroxomonosulfate: Oxidation of glycolic acid

The kinetics of oxidation of glycolic acid, an α‐hydroxy acid, by peroxomonosulfate (PMS) was studied in the presence of Ni(II) and Cu(II) ions and in acidic pH range 4.05–5.89. The metal glycolate, not the glycolic acid (GLYCA), is oxidized by PMS. The rate is first order in [PMS] and metal ion concentrations. The oxidation of nickel glycolate is zero‐order in [GLYCA] and inverse first order in [H⁺]. The increase of [GLYCA] decreases the rate in copper glycolate, and the rate constants initially increase and then remain constant with pH. The results suggest that the metal glycolate ML⁺ reacts with PMS through a metal‐peroxide intermediate, which transforms slowly into a hydroperoxide intermediate by the oxygen atom transfer to hydroxyl group of the chelated GLYCA. The effect of hydrogen ion concentrations on k_obs suggests that the structure of the metal‐peroxide intermediates may be different in Ni(II) and Cu(II) glycolates. © 2008 Wiley Periodicals, Inc. Int J Chem Kinet 41: 160–167, 2009     

Simulation of the kinetics of adenosine 5′-triphosphate hydrolysis catalyzed by the Cu2+ ion: The role of conformation and the catalytic effect of the OH− ion

The hydrolysis kinetics of the dimeric complex (CuATP^2? · OH₂)₂ {D} up to ≈40% ATP conversion at 25°C, pH 5.7–7.8, and [Cu · ATP]₀ = (2.07 ± 0.03) × 10^?3 mol/l is analyzed by numerical simulation. CuADP^? + P_i (P_i is an inorganic phosphate) form from DOH^?, and the latter forms rapidly from D. The abstraction of H⁺ from the coordinated H₂O molecule is an irreversible reaction involving an OH^? ion from the medium. The maximum possible DOH^? concentration at a given pH is reached at the initial stage of hydrolysis (0.3–6.0 min after the initiation of hydrolysis). CuADP^? + P_i form from D via two consecutive irreversible steps. The ADP buildup rate in the process is determined by the reversible conformational transformation of DOH^? resulting in a pentacovalent intermediate (IntK). OH^? ions from the medium are involved both in IntK formation and in the reverse reaction and are a hydrolysis inhibitor. AMP forms from the intermediate IntK₃, which forms reversibly from DOH^?, OH^? ions from the medium being involved in the forward and reverse reactions. This is followed by irreversible (AMPH)^? formation involving H₃O⁺ ions from the medium. The rate and equilibrium constants are determined for the formation and decomposition of hydrolysis intermediates. The concentrations of the intermediates are plotted versus time for various pH values. The structures of the intermediates are suggested. The causes of a peak appearing in the initial ADP formation rate versus pH curve are analyzed.     

Theoretical study of omeprazole behavior: Racemization barrier and decomposition reaction

Omeprazole is a substituted benzimidazole which suppresses gastric‐acid secretion by means of H⁺, K⁺‐ATPase inhibition. It is an optically active drug with the sulfur of the sulfoxide being the chiral center. This pro‐drug can be easily converted into its respective sulfenamide at low pH. In this work, omeprazole has been studied in relation to racemization barrier and decomposition reaction. Quantum chemistry coupled to PCA chemometric method were used to find all minimum energy structures. Conformational analysis and calculation of racemization barriers were carried out by PM3 semiempirical method (Gaussian 98). The average racemization energy barrier for all minimum energy structures (43.56 kcal mol^?1) can be related to the velocity constant in Eyring's equation. The enormous half‐life time at 100°C (9.04 × 10⁴ years) indicates that the process cannot be observed in human time scale. On the other hand, the difference of free energy change (Δ(ΔG) = ?266.78 kcal mol^?1) for the decomposition reaction shows that the process is favorable to the sulfenamide formation. The highly negative Δ(ΔG) obtained for the decomposition reaction shows that this process is extremely exothermic. This result explains why omeprazole decomposes and does not racemize. © 2008 Wiley Periodicals, Inc. Int J Quantum Chem, 2008     

Influence of the pH Value on the Hydrothermal Degradation of Fructose

The hydrothermal treatment of sugars features a promising technology for the production of fine and platform chemicals from renewable resources. In this work the hydrothermal decomposition of fructose was studied in a buffered medium at a pH range between 2.2 and 8.0. It is demonstrated that at lower pH values mainly 5-hydroxymethylfurfural (HMF), levulinic acid and humin are generated, while lactic acid and acetic acid are produced at higher pH values. The work shows that the use of moderate acidic conditions may have advantages for the hydrothermal HMF production over the use of strongly acidic conditions, as especially the degradation into levulinic acid is suppressed. Besides, this study deals with a rather complex reaction network, hence limitations and need for adaption of the kinetic model are discussed.     

A Mechanism Study of a Novel Acid-Activatable Michael-Type Fluorescent Probe for Thiols

A Michael addition is usually taken as a base-catalysed reaction. However, our synthesized 2-(quinolin-2-ylmethylene) malonic acid (QMA) as a Michael-type thiol fluorescent probe is acid-active in its sensing reaction. In this work, based on theoretic calculation and experi-mental study on 7-hydroxy-2-(quinolin-2-ylmethylene) malonic acid, we demonstrated that QMA as a Michael acceptor is acid-activatable, i.e., it works only in solutions at pH<7, and the lower the pH of solutions is, the higher reactivity QMA has. In alkaline solution, the malonate QMA[-2H⁺]^2- cannot react with both RS^- and RSH. In contrast, 2-(quinolin-2-ylmethylene) malonic ester (QME), the ester of QMA, reveal a contrary pH effect on its sensing reaction, that is, it can sense thiols in alkaline solutions but not in acidic solutions, like a normal base-catalysed Michael addition. The values of activation enthalpies from theoretic calculation support the above sensing behavior of two probes under different pH conditions. In acidic solutions, the protonated QMA is more highly reactive towards elec-trophilic attack over its other ionized states in neutral and alkaline solutions, and so can react with lowly reactive RSH. In contrast, there is a big energy barrier in the interaction of QME with RSH (acidic solutions), and the reaction of QME with the highly reactive nucle-ophile RS^- is a low activation energy process (in alkaline solutions). Theoretic calculation reveals that the sensing reaction of QMA undergoes a 1,4-addition process with neutral thiols (RSH), and a 1,2-addition pathway for the sensing reaction of QME with RS^-. Therefore, the sensing reaction of QMA is an acid-catalysed Michael addition via a 1,4-addition, and a normal base-catalysed Michael addition via a 1,2-addition.     

Kinetics and mechanism of the oxidation of a heterocyclic thioamide by silver(II)-cyclam

The kinetics of the oxidation of 4,6-dimethyl-2-mercaptopyrimidine (DMP) by Ag(cyclam)²⁺ were studied in buffer solutions from pH 5.8 to 7.2 at constant ionic strength of 0.10?M?(NaClO₄). The reaction is observed to be first-order with respect to [Ag(cyclam)²⁺] and to [DMP]. However, the reaction rate is affected by the pH of the solution owing to the acid–base equilibrium of the thiol. The mechanism postulated to account for the kinetics includes an acid–base equilibrium and oxidation of thiol (RSH) and thiolate ion (RS^?) by Ag(cyclam)²⁺ to RS^· radicals which undergo rapid dimerization to form disulfide (RSSR). From the postulated mechanism and the observed kinetics a rate expression was derived, and second-order rate constants and activation parameters were calculated. The pK _a values of the acid dissociation reaction of DMP were also determined at four temperatures using spectrophotometric methods, and thermodynamic parameters calculated from the K _a values.     

Oxidative Degradation of l‐Isoleucine by Au3+ Complexes in Weakly Acid Medium: A Kinetic and Mechanistic Investigation

Oxidative degradation of l ‐isoleucine (Ileu) by Au³⁺ complexes has been studied spectrophotometrically in weakly acid medium (acetic acid–sodium acetate buffer, pH range 3.72–4.80) in the temperature range 288–308 K. The reaction is first order with respect to Au^III but complex order (<1) with respect to isoleucine. Ionic strength has no significant effect on the reaction kinetics. Both H⁺ and Cl⁻ ions have been found to show inhibiting effect on the reaction rate. Decreasing solvent polarity exerts an adverse effect on the reaction. Au³⁺ complexes react with the zwitterion form of isoleucine in a one‐step two‐electron transfer redox process. The reaction passes through intermediate formation of iminic cation, which hydrolyzes to produce 2‐methyl butanal, identified by ¹H NMR. The activation parameters ΔH ^≠ and ΔS ^≠ related to the rate‐limiting step of the reaction are evaluated. The derived rate law is in excellent agreement with the experimental results. The kinetic and activation parameters of this investigation have been compared and analyzed with those of the oxidation of l ‐leucine by gold(III).     

Electrochemical Redox Behavior of Omeprazole Using a Glassy Carbon Electrode

The electrochemical redox behavior of omeprazole (OMZ), a gastric acid pump inhibitor, was investigated at a glassy carbon electrode using cyclic, differential pulse and square‐wave voltammetry over a wide pH range. The pH‐dependent oxidation occurs in two irreversible consecutive charge transfer reactions. Adsorption of the nonelectroactive product was also observed. The first oxidation involves removal of one electron, followed by deprotonation and leads to the formation of a hydroxylated species. The second oxidation process is related to the hydroxyl and amino groups in the benzimidazole moiety. The reduction is irreversible, also pH‐dependent, and occurs in a single step at the sulfoxide group in a diffusion‐controlled mechanism. The diffusion coefficient of omeprazole was calculated to be D_OMZ=2.31×10^?6 cm² s^?1.     

Synthesis of Peptide Cysteine Dimedone Using Fmoc-Cys(Dmd)-OH: Glutathione Cysteine Dimedone as a Probe in Investigating the Sulfenic Acid Mediated Oxidation of Glutathione

Dimedone is the most widely used chemical probe for detection of cysteine sulfenic acid in peptides and proteins. The reaction of dimedone with cysteine sulfenic acid results in the formation of unique cysteine dimedone motif containing thioether bridge. Based on the structure of cysteine dimedone residue in polypeptide, a new building block of Fmoc-Cys(Dmd)-OH was developed for solid phase synthesis of peptide cysteine dimedone. Mass spectrometric sequencing of synthetic peptides have confirmed successful incorporation of cysteine dimedone in peptide chain using HBTU/HOBt as a coupling agent. The new method permits synthesis of peptides containing both cysteine thiol and cysteine dimedone in the same sequence which was difficult to achieve by conventional methods. The synthetic peptide of glutathione cysteine dimedone was used as a standard in probing the air-mediated oxidation of thiol to disulfide form of glutathione. The co-elution of standard peptide and reaction mixture of oxidation of glutathione in presence of dimedone using RP-HPLC have confirmed the formation of glutathione cysteine sulfenic as an intermediate in the air-mediated oxidation of glutathione. The synthetic peptides of cysteine dimedone may find application in the field of redox proteomics and generation of antibodies against modified cysteine residue.     

Kinetics and mechanism of pH responsive cationic desorption from poly(vinyl alcohol)-borate hydrogel

Desorption of potassium chloride and calcium chloride from poly(vinyl alcohol)-borate hydrogel was studied at different pH from 3 to 10 using phthalate, phosphate and borate buffers. The rate of desorption from hydrogel was evaluated using conductance method for analysis. It was observed that rate of desorption process decreases on increasing pH of solution from acidic medium to basic medium. The mechanism responsible for the desorption of interacted K⁺ and Ca²⁺ ions in hydrogel moiety in acidic, neutral and basic medium were analyzed. The pseudo first order rate constants for desorption process at different pH were summarized and the rate of desorption of monovalent and divalent cations at various pH compared on the basis of standard deviation and linear regression constant values.     

Inorganic reactions of iodine(+1) in acidic solutions

We present a thorough analysis of the former works concerning the hydrolysis of iodine and its mechanism in acidic or neutral solutions and recommend values of equilibrium and kinetic constants. Since the literature value for the reaction H₂OI⁺ ? HOI + H⁺ appeared questionable, we have measured it by titration of acidic iodine solutions with AgNO₃. Our new value, K(H₂OI⁺ ? HOI + H⁺) ～ 2 M at 25°C, is much larger than accepted before. It decreases slowly with the temperature. We have also measured the rate of the reaction 3HOI → IO₃^? + 2I^? + 3H⁺ in perchloric acid solutions from 5 × 10^?2 M to 0.5 M. It is a second order reaction with a rate constant nearly independent on the acidity. Its value is 25 M^?1 s^?1 at 25°C and decreases slightly when the temperature increases, indicating that the disproportionation mechanism is more complicated than believed before. An analysis of the studies of this disproportionation in acidic and slightly basic solutions strongly supports the importance of a dimeric intermediate 2HOI ? I₂O·H₂O in the mechanism. © 2004 Wiley Periodicals, Inc. Int J Chem Kinet 36:480–493, 2004