Applications of collision dynamics in quadrupole mass spectrometry

Some applications of collision dynamics in the field of quadrupole mass spectrometry are presented. Previous data on the collision induced dissociation of ions in triple quadrupole mass spectrometers is reviewed. A new method to calculate the internal energy distribution of activated ions directly from the increase in the cross section for dissociation with center of mass energy is presented. This method, although approximate, demonstrates explicitly the high efficiency of transfer of translational to internal energy of organic ions. It is argued that at eV center of mass energies, collisions between protein ions and neutrals such as Ar are expected to be highly inelastic. The discovery and application of collisional cooling in radio frequency quadrupoles is reviewed. Some previously unpresented data on fragment ion energies in triple quadrupole tandem mass spectrometry are shown that demonstrate directly the loss of kinetic energy of fragment ions in the cooling process. The development of the energy loss method to measure collision cross sections of protein ions in triple quadrupole instruments is reviewed along with a new discussion of the effects of inelastic collisions in these experiments and related ion mobility experiments.     

Characterization of a high-pressure quadrupole collision cell for low-energy collision-indneed dissociation

A RF-only quadrupole collision cell of new design has been evaluated for use in tandem mass spectrometry experiments as a component of a triple quadrupole mass spectrometer. The new design permits operation at values of collision gas thickness higher by 1 order of magnitude than those used in most cells of this type. When operated at sufficiently high collision gas pressures, the transmission efficiency for precursor ions increases with increasing pressure, often to values greater than those observed in the absence of collision gas. Simultaneously, the attainable resolving power for fragment ions across the entire mass-to-charge ratio range, even for multiply charged precursors, also increases to the point where isomers of a quadruply charged fragment are resolved. The performance of the cell, judged in terms of yields and resolution of fragment ions, has been investigated as a function of the nature and pressure of collision gas, the kinetic energy of the precursor ions that enter the cell, and of the size and charge state of the precursors. The enhanced performance is explicable in terms of a marked deceleration of all ions that emerge from the cell to very low energies, probably a few tens of millielectronvolts, so that the cell effectively acts as an ion source for the second mass filter (fragment ion analyzer) to provide a spectrum of ions of fixed axial energy. The high transmission efficiency appears to arise from a collisional focusing effect analogous to that exploited in three-dimensional RF ion traps. The low axial energies imply that ion transit times through the cell are sufficiently long (several milliseconds) that, in precursor ion experiments where the first mass filter is scanned, a hysteresis effect is observed. This implies that in this operating mode compromises must be sought between scan speed and quality of peak shape. Examples are given of spectra obtained under realistic operating conditions that employ flow injection of samples.     

The high-pressure segmented quadrupole collision cell (HP-SQCC) as an ion molecule reactor

A high-pressure 20-segment quadrupole collision cell (HP-SQCC), which replaces a collision cell in a modified triple-quadrupole mass spectrometer is investigated in this work as an ion-molecule reactor with an inherent heat source. The highest working pressure achievable is 20 mTorr. The 20 quadrupole segments permit superimposition of linear axial electric field over the conventional quadrupole field in the radial direction. The axial and radial fields are employed to control ion temperature. Heat is transferred to the reactants through ion frictional heating. The HP-SQCC utilizes a combination of several physicochemical phenomena and an attempt is made to examine a range of ion-molecule reactions. Due to a sufficiently large number of reactive collisions, the reactor is used to promote sequential exothermic ion-molecule reactions. To characterize the performance of the HP-SQCC, the various ion-molecule reactions between the fragment ions of ferrocene (Cp(2)Fe), cobaltocene (Cp(2)Co) and nitrogen, oxygen, water and carbon monoxide are investigated.     

Analytical performance of a high-pressure radio frequency-only quadrupole collision cell with an axial field applied by using conical rods

The effect on triple-quadrupole performance of applying an axial field, in an rf-only quadrupole collision cell operated at pressures sufficiently high that collisional focusing is operating, has been investigated. The advantages of such cells have been shown previously to include increased transmission and much improved resolution in fragment ion spectra relative to the performance of collision cells operating at lower gas pressures. The disadvantages of high-pressure collision cells all derive from the relatively long transit times for the ions, which can be long relative to characteristic times for scanning the first mass filter (precursor ion selector) or for switching its setting in multiple reaction monitoring (MRM) cycles. The present work describes experiments on a high-pressure cell in which an axial field is created through use of conical rather than cylindrical or hyperbolic rods. In addition, results of computations of the electric fields within such a cell, and of ion trajectories through it, are presented. It is shown that application of axial fields of the order of 0. 1 V/cm can remove all hysteresis effects associated with the long ion transit times, and thus provide excellent performance in quantitation work using MRM, as well as in other scan modes. Furthermore, the advantages of collisional focusing in quadrupole collision cells are shown to be unimpaired by these low axial fields.     

Comparing the capability of collision/reaction cell quadrupole and sector field inductively coupled plasma mass spectrometers for interference removal from 90Sr, 137Cs,and 226Ra

Here we report a quantitative comparison of sector field inductively coupled plasma mass spectrometry (ICP-SFMS) and collision/reaction cell inductively coupled plasma quadrupole mass spectrometry (ICP-QMS) for the detection of ⁹⁰Sr, ¹³⁷Cs, and ²²⁶Ra at ultra-trace levels. We observed that the identification and quantification of radioisotopes by ICP-MS were hampered by spectral (both isobaric and polyatomic ions) and non-spectral (matrix effect) interferences. ICP-QMS has been used to eliminate the isobaric ⁹⁰Sr/⁹⁰Zr interference through the addition of O₂ into the collision cell as a reactant gas. Zr⁺ ions were subsequently converted into ZrO⁺, whereas Sr⁺ ions were not reactive. In addition, the isobaric interference of ¹³⁷Ba on ¹³⁷Cs was eliminated by the addition of N₂O gas in the cell, which led to the formation of BaO⁺ and BaOH⁺ products, whereas Cs⁺ remained unreactive. Furthermore, He and H₂ were used in the collision/reaction cell to eliminate polyatomic ions formed at m/z 226. A comparison of the results obtained by ICP-SFMS after a chemical separation of Sr from Zr and Cs from Ba was performed. Finally, to validate the developed analytical procedures, measurements of the same samples were performed by γ-ray spectroscopy.     

Effect of collision gas pressure and collision energy on reactions between oxygen and the negative molecular ion of tetrachlorodibenzo-p-dioxins in the collision cell of a triple -quadrupole mass spectrometer

Low-energy reactive collisions between the negative molecular ion of a tetrachlorodibenzo-p-dioxin (TCDD) and oxygen inside the collision cell of a triple-stage quadrupole mass spectrometer produce a substitution ion [M ? Cl + O]^?, a phenoxide ion [C₆H_4-nO₂Cl_n]^?·, [M ? HCl]^?·, and Cl^? by which 1,2,3,4-, 1,2,3,6/1,2,3,7- and 2,3,7,8-TCDD isomers can be distinguished either directly or on the basis of intensity ratios. The collision conditions have an important effect on the relative abundances. Energy- and pressure-resolved curves show that the ions formed by a collisionally activated reaction (CAR) process, i.e. [M ? Cl + O]^? and [C₆H_4-n,O₂Cl_n]^?·, are favoured by a high pressure of oxygen (3-6 mTorr) (1 Torr = 133.3 Pa) and a low collision energy (0.1-7 eV), whereas the ions formed by a collisionally activated dissociation (CAD) process, i.e. [M ? HCl]^?· and Cl^?, are favoured by high pressure and high energy. By choosing a relatively low collision energy (5 eV) and high pressure (4 mTorr), the CAR and CAD ions can be clearly detected.     

A novel quadrupole,quistor, quadrupole tandem mass spectrometer

A quadrupole, quistor, quadrupole tandem mass spectrometer allowing selected ion/selected molecule reactions was built. The quistor will be used as a reaction chamber for the study of organic ion-molecule reactions. Ions are generated in a differentially pumped ion source, quadrupole mass selected and injected into the quistor. The ions are trapped in the quistor by the combined action of a deceleration lens, the presence of helium buffer gas and the quistor RF field. As a first test of the performance of the instrument, the reaction rate constant of the reaction of O₂⁺˙ with methane was measured to be 5 × 10^?12 cm³s^?1. This is in good agreement with literature values, indicating that the ions are near thermal equilibrium after a few milliseconds of trapping time.     

Improving IRMPD in a quadrupole ion trap

A focused laser is used to make infrared multiphoton photodissociation (IRMPD) more efficient in a quadrupole ion trap mass spectrometer. Efficient (up to 100%) dissociation at the standard operating pressure of 1 × 10⁻³ Torr can be achieved without any supplemental ion activation and with shorter irradiation times. The axial amplitudes of trapped ion clouds are measured using laser tomography. Laser flux on the ion cloud is increased six times by focusing the laser so that the beam waist approximates the ion cloud size. Unmodified peptide ions from 200 Da to 3 kDa are completely dissociated in 2.5–10 ms at a bath gas pressure of 3.3 × 10⁻⁴ Torr and in 3–25 ms at 1.0 × 10⁻³ Torr. Sequential dissociation of product ions is increased by focusing the laser and by operating at an increased bath gas pressure to minimize the size of the ion cloud.     

Reaction dynamics of Na n + in collision with molecular oxygen

Reaction dynamics of sodium cluster ions, Na _n ⁺ (n = 2–9), in collision with molecular oxygen, O₂ was investigated by measuring the absolute dissociation cross sections and the branching fractions by using a tandem mass spectrometer equipped with several octapole ion guides. The mass spectrum of the product ions show that the dominant reaction channels are production of oxide ions, Na_kO_i (i =1, 2), and intact ions, Na _p ⁺ (p < n). With increase in the collision energy, the cross section for the production of the oxide ions decreased, while that for the production of the intact ions increased. The collision-energy dependences of the cross section for the oxide formation reveals that electron harpooning from the molecule to Na _n ⁺ preludes the oxideion formation. On the other hand, the collision-energy dependences of the cross sections for the intact ion formation is explained by a hard-sphere-collision model similar to the collisional dissociation of Na _n ⁺ by rare-gas impact.     

Reactive collisions in quadrupole cells. Part I. Reaction of [CH3NH2]+˙ with the isomeric butenes and pentenes

The reactions of mass-selected [CH₃NH₂]⁺˙ ions with the isomeric butenes and pentenes were studied at low collision energies in the radiofrequency-only quadrupole collision cell of a hybrid BEqQ tandem mass spectrometer. Characteristic iminium ions arising by addition of the methylamine to the olefin followed by fragmentation are observed for but-1-ene pent-1-ene and 3-methylbut-1-ene. However, for but-2-ene pent-2-ene 2-methylpropene 2-methylbut-1-ene and 2-methylbut-2-ene the major reaction channel of [CH₃NH₂]⁺˙ is charge exchange to form the olefinic molecular ion. The isomeric olefins are characterized to a considerable extent by the characteristic ion–molecule reactions that these molecular ions undergo with the neutral olefin.     

Conformer selection of protein ions by ion mobility in a triple quadrupole mass spectrometer

Electrospray mass spectra of multiply charged protein molecules show two distinct charge state distributions proposed to correspond to a more highly charged, open conformational form and a lower charged, folded form. Elastic collisions carried out in the radiofrequency-only collision cell of a triple quadrupole mass spectrometer have dramatic effects on the appearance of the mass spectra. The different cross sectional areas of the conformers allow preferential selection of one charge state distribution over the other on the basis of ion mobility. Preferential selection is dependent on the nature and pressure of the target gas as well as the nature of the protein. In the case of positively charged horse heart apomyoglobin (MW 16,951 da), a high charge state distribution centered around (M + 20H)²⁰⁺ predominates at low target gas pressures and a second distribution centered around (M + 10H)¹⁰⁺ predominates at high target gas pressures. Bimodal distributions are observed at intermediate pressures and, remarkably, charge states between the two distributions are not effectively populated under most of the conditions examined. Hard sphere collision calculations show large differences in collision frequencies and in the corresponding kinetic energy losses for the two conformational states and they demonstrate that the observed charge state selectivity can be explained through elastic collisions.     

Implementation of dipolar direct current (DDC) collision-induced dissociation in storage and transmission modes on a quadrupole/time-of-flight tandem mass spectrometer

Means for effecting dipolar direct current collision-induced dissociation (DDC CID) on a quadrupole/time-of-flight in a mass spectrometer have been implemented for the broadband dissociation of a wide range of analyte ions. The DDC fragmentation method in electrodynamic storage and transmission devices provides a means for inducing fragmentation of ions over a large mass-to-charge range simultaneously. It can be effected within an ion storage step in a quadrupole collision cell that is operated as a linear ion trap or as ions are continuously transmitted through the collision cell. A DDC potential is applied across one pair of rods in the quadrupole collision cell of a QqTOF hybrid mass spectrometer to effect fragmentation. In this study, ions derived from a small drug molecule, a model peptide, a small protein, and an oligonucleotide were subjected to the DDC CID method in either an ion trapping or an ion transmission mode (or both). Several key experimental parameters that affect DDC CID results, such as time, voltage, low mass cutoff, and bath gas pressure, are illustrated with protonated leucine enkephalin. The DDC CID dissociation method gives a readily tunable, broadband tool for probing the primary structures of a wide range of analyte ions. The method provides an alternative to the narrow resonance conditions of conventional ion trap CID and it can access more extensive sequential fragmentation, depending upon conditions. The DDC CID approach constitutes a collision analog to infrared multiphoton dissociation (IRMPD).     

Velocity dependence of collision broadening cross sections in NH3

The velocity dependence of collision broadening cross sections for both self-broadening and Xe broadening of an infrared transition in NH₃ has been studied by measuring laser saturation resonance linewidths for molecules with specified velocities along the laser propagation direction. For self-broadening, the velocity dependence is in accord with inelastic collisions due to a predominantly dipole-dipole interaction potential, with smaller contributions due to shorter range forces, whereas for Xe broadening, the magnitude and velocity dependence of the collision broadening cross section is in better agreement with velocity changing collisions in the pressure range studied.     

Luminescent charge transfer of ground-state and metastable B+ ions

Endothermic charge-transfer reactions between B⁺(¹S and ³P) ions and several simple gases have been observed in a beam experiment at moderate and low energies. The products B(²S and ²D) were observed by means of their UV emission. Absolute cross sections for the four reaction channels were measured, ranging from 10^?21 to 10^?18 cm². The relative cross sections depend markedly on the collision partner, and are discussed in terms of system symmetry and schematic energy diagrams.     

Forbidden Raman bands of Sf6: collision induced Raman scattering

The frequencies, relative scattering cross sections and depolarizations ratios of forbidden fundamental and overtone Raman bands have been measured for the first time in the gaseous state. The absolute scattering cross sections of the allowed bands of gaseous SF₆ are given as well. The characteristic density dependence of the scattering cross sections of the forbidden fundamentals is explained in terms of collision induced Raman scattering. There is evidence for frame distortion of the molecules during the collision.     

Ion source emittance influence on the transmission of a quadrupole operated in the second stability region

The variation of transmission (T) with resolution (R) has been calculated for a quadrupole mass filter operated in the second stability region with Mathieu parameters q=7.547 and a=0 to 0.02995. The fringing fields at the entrance to the quadrupole, which can be strongly defocusing, and which can dramatically reduce the acceptance, have been included in the calculation. Even in the absence of fringing fields, at a resolution of 10,000 the acceptance in the x and y directions is less than 2 × 10^?4 πr ₀ ⁴ f ², which is about 10^?3 of the acceptance in the first stability region at low resolution. Because the source emittance can strongly effect the T(R) behavior, the calculation of ion transmission has been done for two source emittances that correspond to different degrees of focusing of ions into the quadrupole. The T(R) characteristics for two realistic source emittances give behavior markedly different from the decrease in acceptance with increasing resolution which previously has been used as a measure of the quadrupole transmission. Comparisons of the calculated transmission losses with increasing resolution to earlier experimental results obtained with an inductively coupled plasma source show good agreement provided an emittance which corresponds to ions being tightly focused into the quadrupole is used. The calculation demonstrates that up to a resolution at half height of 7000 in the experiment, the transmission losses were a result of the decreasing quadrupole acceptance. At higher resolution the experimental transmission was limited by either the residence time of the ions in the quadrupole or the rod quality. It is also shown that the strong defocusing effects of the fringing fields at the entrance of the quadrupole can be largely overcome by accelerating the ions through these fields and then decelerating the ions in the quadrupole.     

Zero kinetic energy ions in dissociative attachment on triatomic molecules: S−/OCS,O−/CO2

The zero kinetic energy yield of S^? ions in OCS and O^? ions in CO₂, produced by dissociative electron attachment through the lowest shape resonance, has been measured in a quadrupole mass spectrometer with electrostatic filter for translational energy analysis. The relative cross sections for S^? and O^? ion formation associated with CO fragments excited up to the vibrational level υ = 4 are obtained.     

Collision cell pressure effect on CID spectra pattern using triple quadrupole instruments: a RRKM modeling

Control of the ion internal energy in mass spectrometry is needed to establish a workable mass spectral library. The purpose of this study is to understand and to compare the pressure effects on the collision‐induced dissociation (CID) spectrum pattern recorded using triple quadrupole instruments. The monoprotonated Leucine enkephalin [YGGFL, H⁺] was used as a thermometer molecule to calibrate the electrospray ionization (ESI) and the CID internal energies deposited on the molecular species and the time scale of ion decompositions. The survival yield and the ratio of a₄/b₄ fragment ions were mainly monitored. The energy uptake for the ESI source geometry used in our study has no impact on the CID spectrum fingerprint. The collision cell pressure for the [YGGFL, H⁺] has a major influence on the SY curves slope and on the experimental time scale. To demonstrate the pressure effect on internal energy distribution, three models (threshold, thermal and collisional) based on RRKM theory were built using the Masskinetics software. As a result, the limit of each model is discussed, and the investigation demonstrates that the thermal model, using truncated Maxwell‐Boltzmann internal energy distribution, is well‐suited for simulating the experimental data at high pressure widely used in the analytical conditions. Copyright © 2013 John Wiley & Sons, Ltd.