Conformational stability, r0 structural parameters, and vibrational assignments of mono-substituted cyclobutanes: fluorocyclobutane

Variable temperature (-55 to -100°C) studies of the infrared spectra (3500-400 cm(-1)) of fluorocyclobutane, c-C(4)H(7)F, dissolved in liquid xenon have been carried out as well as the infrared spectra of the gas. By utilizing eight pairs of conformers at 10 different temperatures, the enthalpy difference between the more stable equatorial conformer and the axial form has been determined to be 496±40 cm(-1) (5.93±0.48 kJ/mol). The percentage of the axial conformer present at ambient temperature is estimated to be 8±1%. The ab initio MP2(full) average predicted energy difference from a variety of basis sets is 732±47 cm(-1) (9.04±0.44 kJ/mol) and the average value of 602±20 cm(-1) from density functional theory predictions by the B3LYP method are significantly larger than the experimentally determined enthalpy value. By utilizing previously reported microwave rotational constants for the equatorial and axial conformers combined with ab initio MP2(full)/6-311+G(d,p) predicted structural values, adjusted r(0) parameters have been obtained. The determined heavy atom structural parameters for the equatorial [axial] conformer are: distances (?) C-F=1.383(3) [1.407(3)], C(α)-C(β)=1.543(3) [1.546(3)], C(β)-C(γ)=1.554(3) [1.554(3)] and angles (°) ∠C(α)C(β)C(γ)=85.0(5) [89.2(5)], ∠C(β)C(α)C(β)=89.3(5) [89.2(5)], ∠F-(C(β)C(α)C(β))=117.4(5) [109.2(5)] and a puckering angle of 37.4(5) [20.7(5)]. The conformational stabilities, harmonic force fields, infrared intensities, Raman activities, depolarization ratios and vibrational frequencies have been obtained for both conformers from MP2(full)/6-31G(d) ab initio calculations and compared to experimental values where available. The results are discussed and compared to the corresponding properties of some other monosubstituted cyclobutanes with halogen and pseudo-halogen substituents.     

Conformer specific dissociation dynamics of iodocyclohexane studied by velocity map imaging

The photodissociation dynamics of iodocyclohexane has been studied using velocity map imaging following excitation at many wavelengths within its A-band (230 ≤ λ ≤ 305 nm). This molecule exists in two conformations (axial and equatorial), and one aim of the present experiment was to explore the extent to which conformer-specific fragmentation dynamics could be distinguished. Ground (I) and spin-orbit excited (I?) state iodine atom products were monitored by 2 + 1 resonance enhanced multiphoton ionization, and total kinetic energy release (TKER) spectra and angular distributions derived from analysis of images recorded at all wavelengths studied. TKER spectra obtained at the longer excitation wavelengths show two distinct components, which can be attributed to the two conformers and the different ways in which these partition the excess energy upon C-I bond fission. Companion calculations based on a simple impulsive model suggest that dissociation of the equatorial (axial) conformer preferentially yields vibrationally (rotationally) excited cyclohexyl co-fragments. Both I and I? products are detected at the longest parent absorption wavelength (λ ～ 305 nm), and both sets of products show recoil anisotropy parameters, β > 1, implying prompt dissociation following excitation via a transition whose dipole moment is aligned parallel to the C-I bond. The quantum yield for forming I? products, Φ(I?), has been determined by time resolved infrared diode laser absorption methods to be 0.14 ± 0.02 (at λ = 248 nm) and 0.22 ± 0.05 (at λ = 266 nm). Electronic structure calculations indicate that the bulk of the A-band absorption is associated with transition to the 4A(') state, and that the (majority) I atom products arise via non-adiabatic transfer from the 4A(') potential energy surface (PES) via conical intersection(s) with one or more PESs correlating with ground state products.     

Unexpected conformational properties of 1-trifluoromethyl-1-silacyclohexane, C5H10SiHCF3: gas electron diffraction, low-temperature NMR spectropic studies, and quantum chemical calculations

The molecular structure of axial and equatorial conformers of 1-trifluoromethyl-1-silacyclohexane, (C5H10SiHCF3), as well as the thermodynamic equilibrium between these species was investigated by means of gas electron diffraction (GED), dynamic nuclear magnetic resonance (DNMR) spectroscopy, and quantum chemical calculations (B3LYP, MP2, and CBS-QB3). According to GED, the compound exists as a mixture of two Cs symmetry conformers possessing the chair conformation of the six-membered ring and differing in the axial or equatorial position of the CF3 group (axial=58(12) mol%/equatorial=42(12) mol%) at T=293 K. This result is in a good agreement with the theoretical prediction. This is, however, in sharp contrast to the conformational properties of the cyclohexane analogue. The main structural feature for both conformers is the unusually long exocyclic bond length Si--C 1.934(10) A. A low-temperature 19F NMR experiment results in an axial/equatorial ratio of 17(2) mol%:83(2) mol% at 113 K and a DeltaG (not equal) of 5.5(2) kcal mol-1. CBS-QB3 calculations in the gas-phase and solvation effect calculations using the PCM(B3LYP/6-311G*) and IPCM(B3LYP/6-311G*) models were applied to estimate the axial/equatorial ratio in the 100-300 K temperature range, which showed excellent agreement with the experimental results. The minimum energy pathways for the chair-to-chair inversion of trifluoromethylsilacyclohexane and methylsilacyclohexane were also calculated using the STQN(Path) method.     

Spectra and structure of small ring compounds. LXVII vibrational spectra, variable temperature FT-IR spectra of krypton solutions, conformational stability and ab initio calculations of 1-bromosilacyclobutane

The infrared (3,200-30 cm(-1) spectra of gaseous and solid 1-bromosilacyclobutane, c-C3H6SiBrH, have been recorded. Additionally, the Raman spectra of the liquid (3,200- 30 cm(-1) with quantitative depolarization values and the solid have been recorded. Both the equatorial and the axial conformers have been identified in the fluid phases, Variable temperature ( - 105 to - 150 degrees C) studies of the infrared spectra of the sample dissolved in liquid krypton have been carried out. From these data the enthalpy difference has been determined to be 182 +/- 18 cm(-1) (2.18 +/- 0.22 kJ/mol) with the equatorial conformer the more stable rotamer and only conformer remaining in the annealing solid. At ambient temperature there is approximately 22% of the axial conformer present in the vapor phase. A complete vibrational assignment is proposed for both conformers based on infrared contours, relative intensities, depolarization values and group frequencies. The vibrational assignments are supported by normal coordinate calculations utilizing the force constants from ab initio MP2/6-31G(d) calculations. From the frequencies of the Si-H stretch, the Si-H bond distance of 1.483 A has been determined for both the equatorial and the axial conformers. Complete equilibrium geometries have been determined for both rotamers by ab initio calculations employing the 6-31G(d) and 6-311 +/- G(d,p) basis sets at levels of Hartree Fock (RHF) and/or Moller- Plesset with full electron correlation by the perturbation method to the second order (MP2). The results are discussed and compared to those obtained for some similar molecules.     

High resolution photofragment translational spectroscopy of the near UV photolysis of indole: dissociation via the 1pi sigma* state

The fragmentation dynamics of indole molecules following excitation at 193.3 nm, and at a number of different wavelengths in the range 240 < or = lambda(phot) < or = 286 nm, have been investigated by H Rydberg atom photofragment translational spectroscopy. The longer wavelength measurements have been complemented by measurements of excitation spectra for forming parent and fragment ions by two (or more) photon ionisation processes. Analysis identifies at least three distinct contributions to the observed H atom yield, two of which are attributable to dissociation of indole following radiationless transfer from the 1pi pi* excited states (traditionally labelled 1L(b) and 1L(a)) prepared by UV single photon absorption. The structured channel evident in total kinetic energy release (TKER) spectra recorded at lambda(phot) < or = 263 nm is rationalised in terms of N-H bond fission following initial pi* <-- pi excitation and subsequent coupling to the 1pi sigma* potential energy surface via a conical intersection between the respective surfaces--thereby validating recent theoretical predictions regarding the importance of this process (Sobolewski et al., Phys. Chem. Chem. Phys., 2002, 4, 1093). Analysis provides an upper limit for the N-H bond strength in indole: D0(H-indolyl) < or = 31,900 cm(-1). Unimolecular decay of highly vibrationally excited ground state molecules formed by internal conversion from the initially prepared 1pi pi* states is a source of (slow) H atoms but their contribution to the TKER spectra measured in the present work is dwarfed by that from H atoms generated by one or more (unintended but unavoidable) multiphoton processes.     

Decoding the Structure of Non-Proteinogenic Amino Acids: The Rotational Spectrum of Jet-Cooled Laser-Ablated Thioproline

The broadband rotational spectrum of jet-cooled laser-ablated thioproline was recorded. Two conformers of this system were observed and identified with the help of DFT and ab initio computations by comparison of the observed and calculated rotational constants and ¹⁴N quadrupole coupling constants as well as the predicted energies compared to the observed relative populations. These conformers showed a mixed bent/twisted arrangement of the five-membered ring similar to that of the related compound thiazolidine with the N–H bond in axial configuration. The most stable form had the COOH group in an equatorial position on the same side of the ring as N-H. The arrangement of the C=O group close to the N-H bond led to a weak interaction between them (classified as type I) characterized by a noncovalent interaction analysis. The second form had a trans-COOH arrangement showing a type II O–H···N hydrogen bond. In thioproline, the stability of conformers of type I and type II was reversed with respect to proline. We show how the conformation of the ring depends on the function associated with the endocyclic N atom when comparing the structures of isolated thioproline with its zwitterion observed in condensed phases and with peptide forms.     

Hyperconjugation and the increasing bulk of OCOCX3 substituents in trans-1,4-disubstituted cyclohexanes destabilize the diequatorial conformer

The trans diesters of 1,4-cyclohexanediol with a number of acetic acid analogues, CX3COOH, of varying steric hindrance and polarity (CX3 = Me, Et, iso-Pr, tert-Bu, CF3, CH2Cl, CHCl2, CCl3, CH2Br, CHBr2, CBr3) were synthesized, and the axial,axial/equatorial,equatorial conformational equilibria were studied by low-temperature 1H NMR spectroscopy in CD2Cl2. The structures and relative energies of the axial,axial and equatorial,equatorial conformers were calculated at both the MP2/6-311G* and the MP2/6-311+G* levels of theory, and it was only by including diffuse functions that a good correlation of deltaG(o)calcd vs deltaG(o)exptl could be obtained. Both the structures and the energy differences of the axial,axial and equatorial,equatorial conformers are discussed with respect to the established models of conformational analysis, viz., steric 1,3-diaxial and hyperconjugative interactions. Interestingly, the hyperconjugative interactions sigma(C-C)/sigma(C-H) --> sigma*(C-O), together with a steric effect which also destabilizes the equatorial,equatorial conformers on increasing bulk of the substituents, proved to dominate the position of the conformational equilibria. In addition, the preference of the axial,axial conformers with respect to their equatorial,equatorial analogues was greater than expected from the conformational energies of the corresponding substituents in the monosubstituted cyclohexyl esters. The reason for this very interesting and unexpected result is also discussed.     

Rotamer stability in cis-[Pt(diA)G2] complexes (diA = diamine derivative and G = guanine derivative) mediated by carrier-ligand amine stereochemistry as revealed by circular dichroism spectroscopy

Extensive investigations of cis-[Pt(diA)G2] complexes (in which G = a guanine ligand; diA = a single diamine ligand) revealed the types of interactions between the two G ligands and between the G and the cis-amine substituents when diA is a diamine ligand with substituents on each nitrogen atom being a small hydrogen atom and a bulky group able to slow the rotation about the Pt-G bond. All these interactions are shown to apply also when diA = dach (1,2-diaminocyclohexane), even though this chiral primary diamine has only small N-H atoms on each side of the coordination plane. However, a slight difference in the stereochemistry of the two protons (one N-H has "quasi axial" and the other "quasi equatorial" character) is sufficient to induce a significant change in the relative stabilities of the [Pt(dach)G2] deltaHT and lambdaHT rotamers (HT = head-to-tail). The new results show that at acidic and neutral pH the induction of asymmetry from the dach ligand to the HT rotamers is governed by the G-to-G dipole-dipole interaction, which is greater for the six-membered ring of each guanine leaning towards the cis-G. Such a "six-in" canting of the two guanine ligands can be hampered by the steric interaction between the H8 of each guanine and the substituent on the cis-amine that is on the same side of the coordination plane. Such a repulsion is greater for a "quasi equatorial" N-H than for a "quasi axial" N-H. Under basic pH conditions, deprotonation of the guanine N1-H renders the O6 atom a much better hydrogen-bond acceptor; therefore, the stability of the HT rotamers is governed by the hydrogen-bond interaction of guanine O6 and the cis-amine N-H group. Such a guanine O6/N-H cis-amine interaction is stronger for a "quasi axial" than for a "quasi equatorial" N-H group. In the head-to-head (HH) rotamer, in which the electrostatic repulsion between electron-rich O6 atoms, both on the same side of the platinum coordination plane, tends to place the six-membered rings of each guanine further from the cis-guanine and closer to the cis-amine, we can expect better N-H...O6 hydrogen bonding for the "quasi equatorial" N-H groups.     

Intramolecular O―H⋯O and C―H⋯O hydrogen bond cooperativity in D‐glucopyranose and D‐galactopyranose—A DFT/GIAO,QTAIM/IQA,and NCI approach

Density functional theory calculations are used to compute proton nuclear magnetic resonance (NMR) chemical shifts, interatomic distances, atom–atom interaction energies, and atomic charges for partial structures and conformers of α‐D‐glucopyranose, β‐D‐glucopyranose, and α‐D‐galactopyranose built up by introducing OH groups into 2‐methyltetrahydropyran stepwisely. For the counterclockwise conformers, the most marked effects on the NMR shift and the charge on the OH1 proton are produced by OH2, those of OH3 and OH4 being somewhat smaller. This argues for a diminishing cooperative effect. The effect of OH6 depends on the configuration of the hydroxymethyl group and the position, axial or equatorial, of OH4, which controls hydrogen bonding in the 1,3‐diol motif. Variations in the interaction energies reveal that a “new” hydrogen bond is sometimes formed at the expense of a preexisting one, probably due to geometrical constraints. Whereas previous work showed that complexing a conformer with pyridine affects only the nearest neighbour, successive OH groups increase the interaction energy of the N⋯H1 hydrogen bond and reduce its length. Analogous results are obtained for the clockwise conformers. The interaction energies for C―H⋯OH hydrogen bonding between axial CH protons and OH groups in certain conformers are much smaller than for O―H⋯OH bonds but they are largely covalent, whereas those of the latter are predominantly coulombic. These interactions are modified by complexation with pyridine in the same way as O―H⋯OH interactions: the computed NMR shifts of the CH protons increase, the atom–atom distances are shorter, and interaction energies are enhanced.     

Chair, boat and twist conformation of dodecamethylcyclohexasilane and undecamethylcyclohexasilane: a combined DFT and Raman spectroscopic study.

The conformations of dodecamethylcyclohexasilane Si6Me12 and undecamethylcyclohexasilane Si6Me11H have been investigated by ab initio calculations employing the B3LYP density functional with a 6-31+G(d) basis set. Local minima as well as transition structures were calculated with imposed symmetry constraints. For Si6Me12, three unique minima, which correspond to the chair, twist and boat conformations were located with relative zero-point-vibration-corrected energies of 0.0, 7.8 and 11.4 kJ mol(-1). A half-chair conformation with four coplanar silicon atoms connects the chair and twisted minima via an energy barrier of 16.0 and 8.2 kJ mol(-1), respectively. A second transition structure with a barrier of 3.9/0.3 kJ mol(-1) connects the twist with the boat structure. Solution Raman spectra of Si6(CH3)12 and Si6(CD3)12 fully corroborate these results. Below -40 degrees C, the symmetric SiSi ring breathing vibration is a single line, which develops a shoulder (originating from the twist conformer) at longer wavelengths whose intensity increases with increasing temperature. From a Van't Hoff plot, the chair/twist enthalpy difference is 6.6+/-1.5 kJ mol(-1) for Si6(CH3)12 and 6.0+/-1.5 kJ mol(-1) for Si6(CD3)12, which is in reasonable agreement with the ab initio results. Due to the low barrier, the boat conformation cannot be observed, because either the lowest torsional vibration level lies above it or a rapid interconversion between the twist and boat conformations occurs, resulting in averaged Raman spectra. For Si6Me11H, six local minima were located. The chair with the hydrogen atom in the axial position (axial chair) is the global minimum, followed by the equatorial chair (+1.9 kJ mol(-1)) and the three twist conformers (+5.3, +8.0 and +8.1 kJ mol(-1)). The highest local minimum (+11.9 kJ mol(-1)) is a C(s) symmetric boat with the hydrogen atom in the equatorial position. Two possible pathways for the chair-to-chair interconversion with barriers of 13.9 and 14.5 kJ mol(-1) have been investigated. The solution Raman spectra in the SiSi ring breathing region clearly show that below -50 degrees C only the axial and equatorial chairs are present, with an experimental deltaH-value of 0.46 kJ mol(-1). With increasing temperature a shoulder develops which is attributed to the combined twist conformers. The experimental deltaH-value is 6.9 kJ mol(-1), in good agreement with the ab initio results. Due to the low interconversion barriers, the various twist conformers cannot be detected separately.     

Conformations of 2-aminoindan in a supersonic jet: the role of intramolecular N-H...pi hydrogen bonding

Laser-induced fluorescence (LIF), dispersed fluorescence (DF), mass-resolved one-color resonance enhanced two-photon ionization (RE2PI) and UV-UV hole-burning spectra of 2-aminoindan (2-AI) were measured in a supersonic jet. The hole-burning spectra demonstrated that the congested vibronic structures observed in the LIF excitation spectrum were responsible for three conformers of 2-AI. The origins of the conformers were observed at 36931, 36934, and 36955 cm(-1). The DF spectra obtained by exciting the band origins of the three conformers showed quite similar vibrational structures, with the exception of the bands around 600-900 cm(-1). The molecular structures of the three conformers were assigned with the aid of ab initio calculations at the MP2/6-311+G(d,p) level. An amino hydrogen of the most stable conformer points toward the benzene ring. The stability of the most stable conformer was attributed to an intramolecular N-H...pi hydrogen bonding between the hydrogen atom and the pi-electron of the benzene ring. The other two conformers, devoid of intramolecular hydrogen bonding, were also identified for 2-AI. This suggests weak hydrogen bonding in the most stable conformer. The intramolecular N-H...pi hydrogen bonding in 2-AI was discussed in comparison with other weak hydrogen-bonding systems.     

Laser-induced fluorescence and single vibronic level emission spectroscopy of chiral (R)-1-aminoindan and some of its clusters in a supersonic jet

Two low energy conformers of the chiral (R)-1-aminoindan molecule are identified in supersonic jet and their ground and excited states vibrational spectroscopy has been investigated by laser-induced fluorescence (LIF) excitation and single vibronic level (SVL) emission spectroscopy. Ab initio calculations confirm the existence of two lowest-energy structures, where the amino group is in equatorial position with its lone pair directed opposite to the aromatic electron cloud. Harmonic frequencies have been calculated for these two conformers at the DFT level with B3LYP functional. A low-frequency progression of 118 cm(-1) and 114 cm(-1), respectively, appears in the fluorescence excitation spectrum of the two conformers, with its ground state counterpart at approximately 147 cm(-1). It has been assigned to the puckering motion coupled with the ring flapping mode. The other calculated low-frequency mode corresponds to the puckering motion coupled with the ring twisting mode and its ground state frequency has been observed at 119 cm(-1) and 111 cm(-1) from SVL spectra. Both conformers form similar 1 : 1 water clusters, whose 0-0 transitions are shifted to the blue by 41 cm(-1) and 44 cm(-1), respectively, and whose SVL spectra are similar. Interestingly, one of the conformers seems to preferentially make complexes with (S)-methyllactate, while the other one shows selective complexation to (R)-methyllactate.     

Quantum-chemical study of silacyclohexanes C5H10SiHCN, C5H10SiH(t-Bu), C5H10Si(t-Bu)CN, and C5H10SiHF

By quantum-chemical calculations at the M06-2X/aug-cc-pVTZ level of theory geometrical parameters, dipole moments, polarizabilities, first hyperpolarizabilities and relative energies of the axial and equatorial conformers in gaseous phase were determined for 1-cyano-1-silacyclohexane, 1-tert-butyl-1-silacyclohexane, 1-tert-butyl-1-cyano-1-silacyclohexane, and 1-fluoro-1-silacyclohexane. For the cyano group and fluorine atom the axial position is more preferable whereas for tert-butyl group, equatorial one. Polarizabilities of conformers are similar but optical anisotropy of equatorial conformers of C₅H₁₀SiHCN and C₅H₁₀SiH(t-Bu) molecules is much larger than that of axial conformers. Upon substitution in nitriles of C¹ atom by Si atom the hyperpolarizability is many times increased.     

The utility of infrared spectroscopy for quantitative conformational analysis at a single temperature

The carbonyl stretching vibration of 2-bromocyclohexanone (1) has been measured in a variety of solvents. It is shown that its component intensities are not only dependent on the populations of the axial and equatorial conformers, but are also dependent on the molar absorptivities (epsilon ) which are specific for each conformer in each solvent. In CCl(4), the axial and equatorial conformers have epsilon values of 417 and 818 l mol(-1) x cm(-1), respectively, while in CH(3)CN solution, the values were 664 and 293 l mol(-1) x cm(-1). These results are supported by results of theoretical calculations of frequencies, which gave an intensity of 223.8 kM mol(-1) x(1782 cm(-1)) for the axial and 174.4 kM mol(-1) x (1802 cm(-1)) for the equatorial conformer, indicating that the axial conformer presents a larger molar absorptivity than the equatorial one in the vapor phase. Moreover, the results presented here clearly demonstrate that although infrared spectroscopy at a single temperature can be an important auxiliary technique for conformational analysis, it must not be used to quantify conformational preferences of a molecule if the absorption molar coefficients for each conformer are not known or not amenable to experimental determination.     

High resolution photofragment translational spectroscopy studies of the near ultraviolet photolysis of 2,5-dimethylpyrrole

The photodissociation dynamics of 2,5-dimethylpyrrole (2,5-DMP) has been investigated following excitation at 193.3 nm and at many near ultraviolet (UV) wavelengths in the range 244 < lambda(phot) < 282 nm using H Rydberg atom photofragment translational spectroscopy (PTS). Complementary UV absorption and, at the longest excitation wavelengths, one photon resonant multiphoton ionisation spectra of 2,5-DMP are reported also; analysis of the latter highlights the role of methyl torsional motions in promoting the parent absorption. The deduced fragmentation dynamics show parallels with that reported recently (B. Cronin, M. G. D. Nix, R. H. Qadiri and M. N. R. Ashfold, Phys. Chem. Chem. Phys., 2004, 6, 5031) for the bare pyrrole molecule. Excitation at the longer wavelengths leads to (vibronically induced) population of the 1(1)A(2)(pisigma*) excited state of 2,5-DMP, but once lambda(phot) decreases to approximately 250 nm stronger, dipole allowed transitions start to become apparent in the parent absorption. All total kinetic energy release (TKER) spectra of the H + 2,5-dimethylpyrrolyl (2,5-DMPyl) fragments measured at lambda(phot)> or=244 nm show a structured fast component, many of which are dominated by a peak with TKER approximately 5100 cm(-1); analysis of this structure reveals lambda(phot) dependent population of selected vibrational levels of 2,5-DMPyl, and enables determination of the N-H bond strength in 2,5-DMP: D(0) = 30 530 +/- 100 cm(-1). Two classes of behaviour are proposed to account for details of the observed energy partitioning. Both assume that N-H bond fission involves passage over (or tunnelling through) a small exit channel barrier on the 1(1)A(2) potential energy surface, but differ according to the vibrational energy content of the photo-prepared molecules. Specific parent out-of-plane skeletal modes that promote the 1(1)A(2)-X(1)A(1) absorption appear to evolve adiabatically into the corresponding vibrations of the 2,5-DMPyl products. Methyl torsions can also promote the 1(1)A(2)<-- X(1)A(1) absorption in 2,5-DMP, and provide a means of populating a much higher density of excited vibrational levels than in pyrrole. Such excited levels are deduced to dissociate by redistributing the minimum amount of internal energy necessary to overcome the exit channel barrier in the N-H dissociation coordinate. Coupling with the ground state surface via a conical intersection at extended N-H bond lengths is proposed as a further mechanism for modest translational --> vibrational energy transfer within the separating products. The parent absorption cross-section increases considerably at wavelengths approximately 250 nm, and PTS spectra recorded at lambda(phot)< or = 254 nm display a second, unstructured, peak at lower TKER. As in pyrrole, this slower component is attributed to H atoms from the unimolecular decay of highly vibrationally excited ground state molecules formed via radiationless decay from photo-excited states lying above the 1(1)A(2) state.     

Molecular structure of 2,5-dihydropyrrole (C4NH7), obtained by gas-phase electron diffraction and theoretical calculations

The structure of 2,5-dihydropyrrole (C4NH7) has been determined by gas-phase electron diffraction (GED), augmented by the results from ab initio calculations employing third-order M?ller-Plesset (MP3) level of theory and the 6-311+G(d,p) basis set. Several theoretical calculations were performed. From theoretical calculations using MP3/6-311+G(d,p) evidence was obtained for the presence of an axial (63%) (N-H bond axial to the CNC plane) and an equatorial conformer (37%) (N-H bond equatorial to the CNC plane). The five-membered ring was found to be puckered with the CNC plane inclined at 21.8 (38) degrees to the plane of the four carbon atoms.     

Position matters: competing O-H and N-H photodissociation pathways in hydroxy- and methoxy-substituted indoles

H (Rydberg) atom photofragment translational spectroscopy (HRA-PTS) and complete active space with second order perturbation theory (CASPT2) methods have been used to explore the competing N-H and O-H bond dissociation pathways of 4- and 5-hydroxyindoles (HI) and methoxyindoles (MI). When 4-HI was excited to bound (1)L(b) levels, (λ(phot) ≤ 284.893 nm) O-H bond fission was demonstrated by assignment of the structure within the resulting total kinetic energy release (TKER) spectra. By analogy with phenol, dissociation was deduced to occur by H atom tunnelling under the barrier associated with the lower diabats of the (1)L(b)/(1)πσ*((OH)) conical intersection (CI). No evidence was found for a significant N-H bond dissociation yield at these or shorter excitation wavelengths (284.893 ≥ λ(phot) ≥ 193.3 nm). Companion studies of 4-MI revealed different reaction dynamics. In this case, N-H bond fission is deduced to occur at λ(phot) ≤ 271.104 nm, by direct excitation to the (1)πσ*((NH)) state. Analysis of the measured TKER spectra implies a mechanism wherein, as in pyrrole, the (1)πσ*((NH)) state gains oscillator strength by intensity borrowing from nearby bound states with higher oscillator strengths. HRA-PTS studies of 5-HI, in contrast, showed no evidence for O-H bond dissociation when excited on (1)L(b) levels. The present CASPT2 calculations assist in rationalizing this observation: the area underneath the (1)L(b)/(1)πσ* CI diabats in 5-HI is ~60% greater than the corresponding area in 4-HI and O-H bond dissociation by tunnelling is thus much less probable. Only by reducing the wavelength to ≤ 255 nm were signs of N-H and/or O-H bond dissociation identified. By comparison with companion 5-MI studies, we deduce little O-H bond fission in 5-HI at λ(phot) > 235 nm and that N-H bond fission is the dominant source of H atoms in the wavelength region 255 > λ(phot) > 235 nm. The very different dissociation dynamics of 4- and 5-HI are traced to the position of the -OH substituent, and its effect on the overall electronic structure.     

Recoordination of a metal ion in the cavity of a crown compound: a theoretical study. 1. Conformers of arylazacrown ethers and their complexes with Ca2+ cation

Photoinduced recoordination of Ca²⁺ complexes of the photochromic azacrown ethers is studied by the density functional method. The study included model arylazacrown ethers containing various acceptor groups in the aromatic ring in the para position to the azacrown ether moiety and a real azacrown-containing styryl dye. It is found that both free azacrown ethers and their complexes can adopt two types of conformations: (1) axial conformations, in which the aromatic ring axis passing through the crown ether nitrogen N_cr and the opposite atom of the aromatic ring is perpendicular to the root-mean-square (RMS) plane of the crown ether (least-squares fitted plane for all the crown ether atoms), and (2) equatorial conformations, in which the aromatic ring axis only slightly deflects from the RMS plane of the crown ether. In the equatorial conformers, the metal cation is coordinated only to the O atoms of the azacrown ether cycle, the metal—nitrogen bond is broken, and N_cr is conjugated with the aromatic ring. In the axial conformers, the metal cation is additionally coordinated to N_cr. It is found that the presence of an acceptor group bearing a formal positive charge decreases the relative energy of the equatorial conformer and favors metal—nitrogen bond dissociation, which results in the recoordination of the metal cation. However, a long distance between the charged group and N_cr has the reverse effect. The photoinduced recoordination observed in the alkaline-earth metal complexes of the photochromic azacrown ethers is explained by the transitions between the axial and equatorial conformers facilitated by the charge transfer in the excited state of the complex.     

Overtone-induced dissociation and isomerization dynamics of the hydroxymethyl radical (CH2OH and CD2OH). II. Velocity map imaging studies

The dissociation of the hydroxymethyl radical, CH(2)OH, and its isotopolog, CD(2)OH, following excitation in the 4ν(1) region (OH stretch overtone, near 13,600 cm(-1)) was studied using sliced velocity map imaging. A new vibrational band near 13,660 cm(-1) arising from interaction with the antisymmetric CH stretch was discovered for CH(2)OH. In CD(2)OH dissociation, D atom products (correlated with CHDO) were detected, providing the first experimental evidence of isomerization in the CH(2)OH ? CH(3)O (CD(2)OH ? CHD(2)O) system. Analysis of the H (D) fragment kinetic energy distributions shows that the rovibrational state distributions in the formaldehyde cofragments are different for the OH bond fission and isomerization pathways. Isomerization is responsible for 10%-30% of dissociation events in all studied cases, and its contribution depends on the excited vibrational level of the radical. Accurate dissociation energies were determined: D(0)(CH(2)OH → CH(2)O + H) = 10,160 ± 70 cm(-1), D(0)(CD(2)OH → CD(2)O + H) = 10,135 ± 70 cm(-1), D(0)(CD(2)OH → CHDO + D) = 10,760 ± 60 cm(-1).     

Conformational and structural studies of 1-fluorosilacyclobutane from temperature dependent FT-IR spectra of krypton solutions and ab initio calculations

The infrared spectra (3500 to 40 cm⁻¹) of gaseous and solid and the Raman spectra (3500 to 30 cm⁻¹) of liquid and solid 1-fluorosilacyclobutane, c-C₃H₆SiFH, have been obtained. Both the axial and equatorial conformers with respect to the fluorine atom have been identified in the fluid phases. Variable temperature (−105 to −150 °C) studies of the infrared spectra of the sample dissolved in liquid krypton have been carried out. From these data, the enthalpy difference has been determined to be 282 ± 27 cm⁻¹ (3.37 ± 0.32 kJ/mol), with the equatorial conformer the more stable form and the only conformer remaining in the annealed solid. At ambient temperature there is approximately 21 ± 2% of the axial conformer present in the vapor phase. From isolated Si–H stretching frequencies the Si–H (r₀) distances are calculated to be 1.484 and 1.485 Å for the equatorial and axial conformers, respectively. Structural parameters have been predicted from MP2/6-311 + G(d,p) ab initio calculations and the adjusted r₀ parameters for both conformers were obtained from a combination of the ab initio predicted values and the six previously reported microwave rotational constants. Along with the Si–H bond distance, the Si–C, and C–C distances of 1.865(5), and 1.571(5) Å, respectively, for the equatorial conformer are significantly different from the values for these parameters previously reported from an election diffraction study. Both the SiC and CC distances and the SiF distance are longer by 0.002 and 0.004 Å, respectively, for the axial conformer. Structural parameters have also been obtained for silacyclobutane, c-C₃H₆SiH₂ and ethylsilylfluoride, CH₃CH₂SiH₂F, from combined ab initio predicted values and previously reported rotational constants. Several of these newly determined parameters are significantly different from those previously reported for both molecules. Complete equilibrium geometries, conformational stabilities, harmonic force fields, infrared intensities, Raman activities, and depolarization ratios have been determined for both rotamers by ab initio calculations employing the 6-31G(d) basis set at the level of Moller–Plesset (MP) to second order. A complete vibrational assignment supported by normal coordinate calculations is proposed for the equatorial conformer, and several of the fundamentals of the axial conformer have also been identified. The results are discussed and compared to corresponding quantities for some similar molecules.